Rh2DG020200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012962
Physical Location & Seq
Forward (+)
1177928 .. 1179190
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG020200.1

Sequence Viewer

Length: 426 bp
ATGTCTGCTGCTGCCGGCGCCGACGGTTTGTTCTGGTGCGGGGCCTACGAGGGGTGCATTTCCGGAAGCGACGTCGGGAAGGAACGGCGGCCGTACCACCGCAACTGCGGCTGCGCTTTGCACAACAGGTCGGAGAAGAAGGACCGGCAGCAGCAGCAGCCTTGCACGCACGGAGGGCAAAAGAGTAAAAGCGTATCGTATCCCTTGAGGCGGGCATGGAGCGAAGGGCACTTGGGTTTGGTGGTGGCTAGTAATAACTCTTGTTGTTCAGGGCATTCCTCGCCTTCTTCGTCACCGGCTGCGGCTGCGGTCAGGCAGCCGCAGCCTGTGAGGCACCACCGGTTCGGTTCGGTGGGGTCGTTCGATCGGTTGAGTGCGTTCGACGAGGAGGAGGAGGAAGAGGATATTGTTTTCTTTAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

7.65

Isoelectric Point (pI)

73.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccB1I GGYRCC 2 cut(s) 17, 333
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 8 cut(s) 39, 88, 100, 108, 211, 302, 308, 320
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 18, 72
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 51, 210
AgeI ACCGGT 1 cut(s) 339
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 2 cut(s) 42, 89
AsiGI ACCGGT 1 cut(s) 339
AspLEI GCGC 2 cut(s) 20, 116
AspS9I GGNCC 2 cut(s) 42, 142
AsuHPI GGTGA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 2 cut(s) 17, 333
BbvI GCAGC 9 cut(s) 98, 160, 163, 166, 169, 286, 292, 328, 334
BceAI ACGGC 2 cut(s) 76, 101
BciVI GTATCC 1 cut(s) 210
BfaI CTAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 21
BfuI GTATCC 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 42, 142
BmiI GGNNCC 3 cut(s) 19, 43, 335
BpuEI CTTGAG 1 cut(s) 226
BsaHI GRCGYC 2 cut(s) 18, 72
BsaWI WCCGGW 2 cut(s) 62, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 210
Bse118I RCCGGY 4 cut(s) 14, 144, 295, 339
BseAI TCCGGA 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 51, 210
BseRI GAGGAG 3 cut(s) 401, 404, 407
BseSI GKGCMC 1 cut(s) 231
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 9 cut(s) 98, 160, 163, 166, 169, 286, 292, 328, 334
Bsh1285I CGRYCG 2 cut(s) 92, 367
BshFI GGCC 2 cut(s) 44, 91
BshNI GGYRCC 2 cut(s) 17, 333
BshTI ACCGGT 1 cut(s) 339
BsiEI CGRYCG 2 cut(s) 92, 367
BsiSI CCGG 5 cut(s) 15, 63, 145, 296, 340
BslI CCNNNNNNNGG 2 cut(s) 51, 210
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 2 cut(s) 44, 91
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 8 cut(s) 39, 88, 100, 108, 211, 302, 308, 320
BspANI GGCC 2 cut(s) 44, 91
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 19, 43, 335
BspT107I GGYRCC 2 cut(s) 17, 333
BsrFI RCCGGY 4 cut(s) 14, 144, 295, 339
BssAI RCCGGY 4 cut(s) 14, 144, 295, 339
BssMI GATC 1 cut(s) 364
BssNI GRCGYC 2 cut(s) 18, 72
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 2 cut(s) 18, 72
BstC8I GCNNGC 3 cut(s) 16, 167, 213
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 116
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstMCI CGRYCG 2 cut(s) 92, 367
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 9 cut(s) 98, 160, 163, 166, 169, 286, 292, 328, 334
BstZI CGGCCG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 44, 91
Cac8I GCNNGC 3 cut(s) 16, 167, 213
CfoI GCGC 2 cut(s) 20, 116
Cfr10I RCCGGY 4 cut(s) 14, 144, 295, 339
Cfr13I GGNCC 2 cut(s) 42, 142
Csp6I GTAC 1 cut(s) 94
CspAI ACCGGT 1 cut(s) 339
CviAII CATG 1 cut(s) 216
CviJI RGCY 9 cut(s) 44, 91, 111, 160, 248, 299, 305, 319, 325
CviKI_1 RGCY 9 cut(s) 44, 91, 111, 160, 248, 299, 305, 319, 325
CviQI GTAC 1 cut(s) 94
DinI GGCGCC 1 cut(s) 19
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EclXI CGGCCG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaeI CATG 1 cut(s) 219
FaiI YATR 1 cut(s) 217
FatI CATG 1 cut(s) 215
FauI CCCGC 2 cut(s) 32, 204
FspBI CTAG 1 cut(s) 249
GlaI GCGC 2 cut(s) 19, 115
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 44, 91
HapII CCGG 5 cut(s) 15, 63, 145, 296, 340
HhaI GCGC 2 cut(s) 20, 116
Hin1I GRCGYC 2 cut(s) 18, 72
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 2 cut(s) 18, 114
HinP1I GCGC 2 cut(s) 18, 114
HpaII CCGG 5 cut(s) 15, 63, 145, 296, 340
HphI GGTGA 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 63, 76
Hpy99I CGWCG 4 cut(s) 26, 74, 77, 386
HpyAV CCTTC 4 cut(s) 73, 133, 218, 294
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 57, 121, 165
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 18, 72
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 2 cut(s) 18, 114
KasI GGCGCC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 62
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 9 cut(s) 98, 160, 163, 166, 169, 286, 292, 328, 334
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 291
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 3 cut(s) 148, 279, 410
MhlI GDGCHC 1 cut(s) 231
Mly113I GGCGCC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 1 cut(s) 417
MspI CCGG 5 cut(s) 15, 63, 145, 296, 340
Mva1269I GAATGC 1 cut(s) 274
NaeI GCCGGC 1 cut(s) 16
NarI GGCGCC 1 cut(s) 18
NdeII GATC 1 cut(s) 364
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 3 cut(s) 19, 43, 335
NmuCI GTSAC 1 cut(s) 291
PcsI WCGNNNNNNNCGW 2 cut(s) 287, 356
PctI GAATGC 1 cut(s) 274
PdiI GCCGGC 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 339
Ple19I CGATCG 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 19, 43, 335
PspPI GGNCC 2 cut(s) 42, 142
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 42, 142
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 75, 131, 423
SfoI GGCGCC 1 cut(s) 19
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SsiI CCGC 8 cut(s) 39, 88, 100, 108, 211, 302, 308, 320
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 363, 381
TauI GCSGC 4 cut(s) 91, 111, 305, 322
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 1 cut(s) 249
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.