Prupe.7G253800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012962
Physical Location & Seq
Forward (+)
21377074 .. 21378105
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G253800.1

Sequence Viewer

Length: 396 bp
ATGGCCGCCACGGGAGCCGCCGCGGACGGGCTATTCCGGTGTGTTTACGAGGGGTGCATCGCAGGGTCTGATGTAGGGGTGGAGCGGAGGCCTTACCACCGCAACTGCGGGTGCGCGCTGCATAACAAGTCACGTAACAAACAATGTACGCACGGAGGGCCAAAGTGCAAGAAGGTGTCATATCCAATGAGGCGGGCTTGGAGCGAGGGCTCTTTGGCATTGGTGGCTGCTTCTTCTGCTCACTCCTCACCCTCTTCTTCACCTGCTCAGAATCATCATGTGGTGGCGGTGGGGAGGCAGCAGCAGCAGCAGCAGCAGCATCCTCAATTGGGTACTTTGTGTGATGATGATCAGGAGGAGGAAGAAGATGAGAATATTGTTTTCTTCAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.25

Weight (kDa)

7.03

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 85
AccII CGCG 2 cut(s) 23, 116
AciI CCGC 9 cut(s) 6, 18, 21, 23, 85, 100, 108, 193, 287
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 148, 334
AfiI CCNNNNNNNGG 2 cut(s) 27, 329
AgsI TTSAA 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 3 cut(s) 3, 89, 158
ApeKI GCWGC 9 cut(s) 118, 227, 298, 301, 304, 307, 310, 313, 316
AspLEI GCGC 2 cut(s) 116, 118
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 240, 252
BanII GRGCYC 1 cut(s) 212
BbvI GCAGC 9 cut(s) 105, 214, 310, 313, 316, 319, 322, 325, 328
BclI TGATCA 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 2 cut(s) 66, 328
BsaAI YACGTR 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 9, 21
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 329
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 9, 21
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 2 cut(s) 27, 329
BseMII CTCAG 1 cut(s) 281
BsePI GCGCGC 1 cut(s) 114
BseRI GAGGAG 2 cut(s) 235, 371
BseXI GCAGC 9 cut(s) 105, 214, 310, 313, 316, 319, 322, 325, 328
Bsh1236I CGCG 2 cut(s) 23, 116
BshFI GGCC 3 cut(s) 5, 91, 160
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 27, 329
BsnI GGCC 3 cut(s) 5, 91, 160
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 9 cut(s) 6, 18, 21, 23, 85, 100, 108, 193, 287
BspANI GGCC 3 cut(s) 5, 91, 160
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 2 cut(s) 23, 116
BspLI GGNNCC 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 9, 21
BssHII GCGCGC 1 cut(s) 114
BssMI GATC 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 116, 195
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 2 cut(s) 9, 21
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 2 cut(s) 23, 116
BstHHI GCGC 2 cut(s) 116, 118
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 9 cut(s) 14, 157, 224, 236, 304, 307, 310, 313, 316
BstUI CGCG 2 cut(s) 23, 116
BstV1I GCAGC 9 cut(s) 105, 214, 310, 313, 316, 319, 322, 325, 328
BsuRI GGCC 3 cut(s) 5, 91, 160
BtgI CCRYGG 2 cut(s) 9, 21
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 116, 195
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 2 cut(s) 116, 118
Cfr13I GGNCC 1 cut(s) 158
Cfr42I CCGCGG 1 cut(s) 24
Csp6I GTAC 2 cut(s) 147, 333
CviAII CATG 1 cut(s) 278
CviJI RGCY 8 cut(s) 5, 17, 31, 91, 160, 197, 210, 227
CviKI_1 RGCY 8 cut(s) 5, 17, 31, 91, 160, 197, 210, 227
CviQI GTAC 2 cut(s) 147, 333
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 212
FaeI CATG 1 cut(s) 281
FaiI YATR 3 cut(s) 123, 181, 279
FatI CATG 1 cut(s) 277
FauI CCCGC 2 cut(s) 101, 186
FbaI TGATCA 1 cut(s) 349
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 212
GlaI GCGC 2 cut(s) 115, 117
HaeIII GGCC 3 cut(s) 5, 91, 160
HapII CCGG 1 cut(s) 37
HhaI GCGC 2 cut(s) 116, 118
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 2 cut(s) 114, 116
HinP1I GCGC 2 cut(s) 114, 116
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 240, 252
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 70, 270
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 57, 121, 168
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 157, 224, 236, 304, 307, 310, 313, 316
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 2 cut(s) 114, 116
Ksp22I TGATCA 1 cut(s) 349
KspI CCGCGG 1 cut(s) 24
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 3 cut(s) 14, 82, 201
LpnPI CCDG 4 cut(s) 48, 50, 276, 338
Lsp1109I GCAGC 9 cut(s) 105, 214, 310, 313, 316, 319, 322, 325, 328
LweI GCATC 2 cut(s) 66, 328
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 2 cut(s) 129, 134
MalI GATC 1 cut(s) 351
MbiI CCGCTC 1 cut(s) 85
MboI GATC 1 cut(s) 349
MboII GAAGA 6 cut(s) 225, 246, 249, 374, 376, 377
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 326
MvnI CGCG 2 cut(s) 23, 116
MwoI GCNNNNNNNGC 9 cut(s) 14, 157, 224, 236, 304, 307, 310, 313, 316
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 129
PaqCI CACCTGC 1 cut(s) 271
PauI GCGCGC 1 cut(s) 114
PceI AGGCCT 1 cut(s) 91
PfeI GAWTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 68
PteI GCGCGC 1 cut(s) 114
RsaI GTAC 2 cut(s) 148, 334
RsaNI GTAC 2 cut(s) 147, 333
SacII CCGCGG 1 cut(s) 24
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 212
SetI ASST 4 cut(s) 136, 177, 265, 393
SfaNI GCATC 2 cut(s) 66, 328
Sfr303I CCGCGG 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 24
Sse9I AATT 1 cut(s) 326
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 9 cut(s) 6, 18, 21, 23, 85, 100, 108, 193, 287
SspI AATATT 1 cut(s) 376
StuI AGGCCT 1 cut(s) 91
TaiI ACGT 1 cut(s) 136
TasI AATT 1 cut(s) 326
TauI GCSGC 3 cut(s) 8, 20, 23
TfiI GAWTC 1 cut(s) 271
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 9 cut(s) 118, 227, 298, 301, 304, 307, 310, 313, 316
Tsp45I GTSAC 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.