Rh2CG019400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012962
Physical Location & Seq
Forward (+)
1518401 .. 1519663
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG019400.1

Sequence Viewer

Length: 423 bp
ATGTCTGCTGCTGCCGGCGCCGACGGGTTGTTCCGGTGCGGGGCCTACGAGGGGTGCATTTCCGGAAGCGACGTCGGGAAGGAACGGCGGCCGTACCACCGCAACTGCGGCTGCGCTTTGCACAACAGGTCGGAGAAGAAGGACCGGCAGCAGCAGCATTGCACGCACGGAGGGCAAAAGAGTAAAAGCGTATCGTATCCCTTGAGGCGGGCATGGAGCGAAGGGCACTTGGGTTTGGTGGTGGCTAGTAATAACTCTTGTTGTTCAGGGCATTCCTCGCCTTCTTCGTCACCGGCTGCGGCTGGGGTCAGGCAACCGCAGCCGGTGAGGCACCACCGGTTCGGTTCGGTGGGGTCGTTAGATCGGTTGAGTGCGTTCGACGAGGAGGAGGAGGAAGAGGATATTGTTTTCTTTAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.19

Weight (kDa)

8.2

Isoelectric Point (pI)

70.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccB1I GGYRCC 2 cut(s) 17, 330
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 7 cut(s) 39, 88, 100, 108, 208, 299, 317
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 18, 72
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 3 cut(s) 40, 51, 207
AgeI ACCGGT 1 cut(s) 336
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 2 cut(s) 42, 89
ApeKI GCWGC 8 cut(s) 8, 11, 111, 148, 151, 154, 296, 319
AsiGI ACCGGT 1 cut(s) 336
AspLEI GCGC 2 cut(s) 20, 116
AspS9I GGNCC 2 cut(s) 42, 142
AsuHPI GGTGA 2 cut(s) 282, 337
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 228
BanI GGYRCC 2 cut(s) 17, 330
BbvI GCAGC 6 cut(s) 98, 160, 163, 166, 283, 331
BceAI ACGGC 2 cut(s) 76, 101
BciVI GTATCC 1 cut(s) 207
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 21
BfuI GTATCC 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 42, 142
BmiI GGNNCC 3 cut(s) 19, 43, 332
BpuEI CTTGAG 1 cut(s) 223
BsaHI GRCGYC 2 cut(s) 18, 72
BsaWI WCCGGW 3 cut(s) 33, 62, 336
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 51, 207
Bse118I RCCGGY 5 cut(s) 14, 144, 292, 322, 336
Bse3DI GCAATG 1 cut(s) 157
BseAI TCCGGA 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 40, 51, 207
BseMI GCAATG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 398, 401, 404
BseSI GKGCMC 1 cut(s) 228
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 6 cut(s) 98, 160, 163, 166, 283, 331
BseYI CCCAGC 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 44, 91
BshNI GGYRCC 2 cut(s) 17, 330
BshTI ACCGGT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 92
BsiSI CCGG 7 cut(s) 15, 34, 63, 145, 293, 323, 337
BslI CCNNNNNNNGG 3 cut(s) 40, 51, 207
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 44, 91
Bsp1286I GDGCHC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 7 cut(s) 39, 88, 100, 108, 208, 299, 317
BspANI GGCC 2 cut(s) 44, 91
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 19, 43, 332
BspT107I GGYRCC 2 cut(s) 17, 330
BsrDI GCAATG 1 cut(s) 157
BsrFI RCCGGY 5 cut(s) 14, 144, 292, 322, 336
BssAI RCCGGY 5 cut(s) 14, 144, 292, 322, 336
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 2 cut(s) 18, 72
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 2 cut(s) 18, 72
BstC8I GCNNGC 3 cut(s) 16, 164, 210
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 116
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 8 cut(s) 17, 108, 154, 163, 172, 277, 319, 328
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 6 cut(s) 98, 160, 163, 166, 283, 331
BstZI CGGCCG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 44, 91
Cac8I GCNNGC 3 cut(s) 16, 164, 210
CfoI GCGC 2 cut(s) 20, 116
Cfr10I RCCGGY 5 cut(s) 14, 144, 292, 322, 336
Cfr13I GGNCC 2 cut(s) 42, 142
Csp6I GTAC 1 cut(s) 94
CspAI ACCGGT 1 cut(s) 336
CviAII CATG 1 cut(s) 213
CviJI RGCY 7 cut(s) 44, 91, 111, 245, 296, 302, 322
CviKI_1 RGCY 7 cut(s) 44, 91, 111, 245, 296, 302, 322
CviQI GTAC 1 cut(s) 94
DinI GGCGCC 1 cut(s) 19
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
EclXI CGGCCG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaeI CATG 1 cut(s) 216
FaiI YATR 1 cut(s) 214
FatI CATG 1 cut(s) 212
FauI CCCGC 2 cut(s) 32, 201
FspBI CTAG 1 cut(s) 246
GlaI GCGC 2 cut(s) 19, 115
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 44, 91
HapII CCGG 7 cut(s) 15, 34, 63, 145, 293, 323, 337
HhaI GCGC 2 cut(s) 20, 116
Hin1I GRCGYC 2 cut(s) 18, 72
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 2 cut(s) 18, 114
HinP1I GCGC 2 cut(s) 18, 114
HpaII CCGG 7 cut(s) 15, 34, 63, 145, 293, 323, 337
HphI GGTGA 2 cut(s) 282, 337
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 63, 76
Hpy99I CGWCG 4 cut(s) 26, 74, 77, 383
HpyAV CCTTC 4 cut(s) 73, 133, 215, 291
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 57, 121, 162
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 108, 154, 163, 172, 277, 319, 328
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 18, 72
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 2 cut(s) 18, 114
KasI GGCGCC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 62
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 216
Lsp1109I GCAGC 6 cut(s) 98, 160, 163, 166, 283, 331
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 148, 276, 407
MhlI GDGCHC 1 cut(s) 228
Mly113I GGCGCC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 1 cut(s) 414
MspI CCGG 7 cut(s) 15, 34, 63, 145, 293, 323, 337
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 8 cut(s) 17, 108, 154, 163, 172, 277, 319, 328
NaeI GCCGGC 1 cut(s) 16
NarI GGCGCC 1 cut(s) 18
NdeII GATC 1 cut(s) 361
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 3 cut(s) 19, 43, 332
NmuCI GTSAC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 353
PctI GAATGC 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 336
PluTI GGCGCC 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 3 cut(s) 19, 43, 332
PspPI GGNCC 2 cut(s) 42, 142
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 2 cut(s) 42, 142
SduI GDGCHC 1 cut(s) 228
SetI ASST 3 cut(s) 75, 131, 420
SfoI GGCGCC 1 cut(s) 19
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 7 cut(s) 39, 88, 100, 108, 208, 299, 317
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 246
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 378
TauI GCSGC 3 cut(s) 91, 111, 302
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 8 cut(s) 8, 11, 111, 148, 151, 154, 296, 319
Tsp45I GTSAC 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 1 cut(s) 246
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.