AT5G35110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012962
Physical Location & Seq
Reverse (-)
13363527 .. 13364411
885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35110.1

Sequence Viewer

Length: 339 bp
ATGGCTGCCGGATCCATGGACGGAATATTCCGCAACATCTTTGAAGGTTGCATCTCTAGCTGTGACTCTTCCATCCAACGACGTCCATACCACAAGAACTGCGGTTGTGCCCTTCACGAGAGATCTCGCGGTGGAGGTTCAGCGACTCCTTGTCGTCATGGAAGGTCTGAGGTCGTTATGTTCCCTATCCAACGATCTTGGAGTGAAGGAAACAGTTTGGCTCTGCATCTTGCCTCATCTTCTTCTTCCTCTAACCTCCAGTCACTTTCGTCGTCTTCGTCTATTTCTACCCTTGCATCGTTATCTTCGACCGTGTCTGATATTGATTCTCCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.8

Weight (kDa)

7.7

Isoelectric Point (pI)

83.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 85
AccII CGCG 1 cut(s) 129
AciI CCGC 3 cut(s) 31, 102, 129
AclWI GGATC 2 cut(s) 6, 19
AcyI GRCGYC 1 cut(s) 82
AgsI TTSAA 1 cut(s) 44
AhdI GACNNNNNGTC 1 cut(s) 150
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwI GGATC 2 cut(s) 6, 19
ApeKI GCWGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 112
BamHI GGATCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 267
BccI CCATC 1 cut(s) 80
BfaI CTAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 122
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmeRI GACNNNNNGTC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 13
BmsI GCATC 3 cut(s) 60, 235, 305
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 11, 122, 194
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 3 cut(s) 31, 102, 129
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 2 cut(s) 6, 19
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 11, 122, 194
BssNI GRCGYC 1 cut(s) 82
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 215, 313
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 3 cut(s) 14, 125, 197
BstMBI GATC 3 cut(s) 11, 122, 194
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 11, 122
BstYI RGATCY 2 cut(s) 11, 122
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 72
CviAII CATG 2 cut(s) 16, 158
CviJI RGCY 3 cut(s) 5, 60, 221
CviKI_1 RGCY 3 cut(s) 5, 60, 221
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 13, 124, 196
DpnII GATC 3 cut(s) 11, 122, 194
DriI GACNNNNNGTC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 19, 161
FaiI YATR 4 cut(s) 17, 88, 159, 179
FatI CATG 2 cut(s) 15, 157
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 242
HapII CCGG 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 19, 161
HinfI GANTC 3 cut(s) 65, 145, 326
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 169, 319
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 2 cut(s) 84, 274
HpyAV CCTTC 4 cut(s) 38, 122, 156, 200
HpyCH4III ACNGT 2 cut(s) 215, 313
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 51, 226, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 19, 161
Kzo9I GATC 3 cut(s) 11, 122, 194
LpnPI CCDG 2 cut(s) 22, 272
LweI GCATC 3 cut(s) 60, 235, 305
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 62, 261
MalI GATC 3 cut(s) 13, 124, 196
MboI GATC 3 cut(s) 11, 122, 194
MboII GAAGA 6 cut(s) 60, 231, 234, 237, 267, 297
MflI RGATCY 2 cut(s) 11, 122
MhlI GDGCHC 1 cut(s) 112
MlyI GAGTC 2 cut(s) 59, 139
MmeI TCCRAC 2 cut(s) 100, 214
MnlI CCTC 5 cut(s) 128, 163, 244, 259, 266
MseI TTAA 1 cut(s) 337
MspI CCGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 57
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 11, 122, 194
NlaIII CATG 2 cut(s) 19, 161
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 2 cut(s) 62, 261
PcsI WCGNNNNNNNCGW 2 cut(s) 275, 305
PfeI GAWTC 1 cut(s) 326
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 59, 139
PpsI GAGTC 2 cut(s) 59, 139
PspN4I GGNNCC 1 cut(s) 13
PsuI RGATCY 2 cut(s) 11, 122
PsyI GACNNNGTC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 11, 122, 194
SchI GAGTC 2 cut(s) 59, 139
SduI GDGCHC 1 cut(s) 112
SetI ASST 7 cut(s) 49, 62, 85, 139, 167, 174, 258
SfaNI GCATC 3 cut(s) 60, 235, 305
SsiI CCGC 3 cut(s) 31, 102, 129
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 215, 313
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 308
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseFI GTSAC 2 cut(s) 62, 261
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 62, 261
TspGWI ACGGA 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 313
XspI CTAG 1 cut(s) 57
ZraI GACGTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.