RLG00000015767

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012962
Physical Location & Seq
Forward (+)
1283067 .. 1284240
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015767

Sequence Viewer

Length: 546 bp
ATGTCTGCTGCTGCCGGAGCCGACGGGTTGTTCCTGTGCGGGGCCTACGAGGGGTGCATTTCAGGAAGCGACGTCGGGAAGGAACGGCGGCCGTACCACCGCAACTGCGGCTGCGCTTTGCACAACAGGTCGGAGAAGAAGGACCGGCAGCAGCAGCAGCAGCATTGCACCCACGGAGGGCAAAAGAGTAAAAGCGTATCGTATCCCTTGAGGCGGGCGTGGAGCGAAGGGCACTTGGGTTTGGTGGTGGCTAGTAATAACTCTTGTTGTTCAGGGCATTCCTCGCCTTCTTCGTCACCGGCTGCGGCTGGGGTCAGGCAGCCGCAGCCGGTGAGTCACCACCGGTTCTGTTCGGTGGGGTCGTTCGATCGGTTGAGTGCGTTCGACGAGGAGGAGGAGGAAGAGGATATTGTTTTCTTTAAGATGCGTTTCGAGATGTCATCGGATATTTTCTTTGAAGACGTGTTCAAGTCTGCGATAATCTTAGGTGTTATGGTGATGATTTCAAGTTGGGATCAAGAAATCCATCATGGTAGTAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.92

Weight (kDa)

6.18

Isoelectric Point (pI)

68.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AciI CCGC 7 cut(s) 39, 88, 100, 108, 214, 305, 323
AclWI GGATC 1 cut(s) 522
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 4 cut(s) 40, 51, 177, 213
AflIII ACRYGT 1 cut(s) 462
AgeI ACCGGT 1 cut(s) 342
AgsI TTSAA 3 cut(s) 458, 469, 507
AjiI CACGTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 522
AoxI GGCC 2 cut(s) 42, 89
AsiGI ACCGGT 1 cut(s) 342
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 42, 142
AsuHPI GGTGA 4 cut(s) 288, 329, 343, 508
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 9 cut(s) 98, 160, 163, 166, 169, 172, 289, 331, 337
BccI CCATC 1 cut(s) 534
BceAI ACGGC 2 cut(s) 76, 101
BciVI GTATCC 1 cut(s) 213
BfaI CTAG 1 cut(s) 252
BfuI GTATCC 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 42, 142
BmiI GGNNCC 2 cut(s) 19, 43
BmsI GCATC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 51, 177, 213
Bse118I RCCGGY 4 cut(s) 144, 298, 328, 342
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 4 cut(s) 40, 51, 177, 213
BseMI GCAATG 1 cut(s) 163
BseRI GAGGAG 3 cut(s) 404, 407, 410
BseSI GKGCMC 1 cut(s) 234
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 9 cut(s) 98, 160, 163, 166, 169, 172, 289, 331, 337
BseYI CCCAGC 1 cut(s) 308
Bsh1285I CGRYCG 2 cut(s) 92, 370
BshFI GGCC 2 cut(s) 44, 91
BshTI ACCGGT 1 cut(s) 342
BsiEI CGRYCG 2 cut(s) 92, 370
BsiSI CCGG 5 cut(s) 15, 145, 299, 329, 343
BslI CCNNNNNNNGG 4 cut(s) 40, 51, 177, 213
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 44, 91
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 367, 514
BspACI CCGC 7 cut(s) 39, 88, 100, 108, 214, 305, 323
BspANI GGCC 2 cut(s) 44, 91
BspLI GGNNCC 2 cut(s) 19, 43
BspPI GGATC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 4 cut(s) 144, 298, 328, 342
BssAI RCCGGY 4 cut(s) 144, 298, 328, 342
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 367, 514
BssNI GRCGYC 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 484, 543
BstDSI CCRYGG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 370, 517
BstMBI GATC 2 cut(s) 367, 514
BstMCI CGRYCG 2 cut(s) 92, 370
BstMWI GCNNNNNNNGC 7 cut(s) 17, 108, 154, 157, 160, 283, 325
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 9 cut(s) 98, 160, 163, 166, 169, 172, 289, 331, 337
BstV2I GAAGAC 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 2 cut(s) 44, 91
BtgI CCRYGG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 4 cut(s) 144, 298, 328, 342
Cfr13I GGNCC 2 cut(s) 42, 142
Csp6I GTAC 1 cut(s) 94
CspAI ACCGGT 1 cut(s) 342
CviAII CATG 1 cut(s) 530
CviJI RGCY 9 cut(s) 20, 44, 91, 111, 251, 302, 308, 322, 328
CviKI_1 RGCY 9 cut(s) 20, 44, 91, 111, 251, 302, 308, 322, 328
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 484, 543
DpnI GATC 2 cut(s) 369, 516
DpnII GATC 2 cut(s) 367, 514
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EclXI CGGCCG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 42
FaeI CATG 1 cut(s) 533
FaiI YATR 2 cut(s) 494, 531
FatI CATG 1 cut(s) 529
FauI CCCGC 2 cut(s) 32, 207
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 44, 91
HapII CCGG 5 cut(s) 15, 145, 299, 329, 343
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 533
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 1 cut(s) 334
HpaII CCGG 5 cut(s) 15, 145, 299, 329, 343
HphI GGTGA 4 cut(s) 288, 329, 343, 508
Hpy188I TCNGA 2 cut(s) 133, 445
Hpy188III TCNNGA 4 cut(s) 63, 76, 433, 518
Hpy99I CGWCG 4 cut(s) 26, 74, 77, 389
HpyAV CCTTC 4 cut(s) 73, 133, 221, 297
HpyCH4IV ACGT 2 cut(s) 72, 462
HpyCH4V TGCA 3 cut(s) 57, 121, 168
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 108, 154, 157, 160, 283, 325
HpyF3I CTNAG 2 cut(s) 484, 543
HpySE526I ACGT 2 cut(s) 72, 462
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 533
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 367, 514
LmnI GCTCC 2 cut(s) 17, 222
Lsp1109I GCAGC 9 cut(s) 98, 160, 163, 166, 169, 172, 289, 331, 337
LweI GCATC 1 cut(s) 414
MaeI CTAG 1 cut(s) 252
MaeII ACGT 2 cut(s) 72, 462
MaeIII GTNAC 2 cut(s) 294, 335
MalI GATC 2 cut(s) 369, 516
MboI GATC 2 cut(s) 367, 514
MboII GAAGA 4 cut(s) 148, 282, 413, 470
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 538
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 43, 170, 204, 292, 382, 385, 388, 391, 397
MseI TTAA 1 cut(s) 420
MspI CCGG 5 cut(s) 15, 145, 299, 329, 343
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 7 cut(s) 17, 108, 154, 157, 160, 283, 325
NdeII GATC 2 cut(s) 367, 514
NlaIII CATG 1 cut(s) 533
NlaIV GGNNCC 2 cut(s) 19, 43
NmuCI GTSAC 2 cut(s) 294, 335
PcsI WCGNNNNNNNCGW 2 cut(s) 290, 359
PctI GAATGC 1 cut(s) 277
PinAI ACCGGT 1 cut(s) 342
Ple19I CGATCG 1 cut(s) 370
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 19, 43
PspPI GGNCC 2 cut(s) 42, 142
PvuI CGATCG 1 cut(s) 370
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 2 cut(s) 367, 514
Sau96I GGNCC 2 cut(s) 42, 142
SchI GAGTC 1 cut(s) 343
SduI GDGCHC 1 cut(s) 234
SetI ASST 4 cut(s) 75, 131, 465, 490
SfaNI GCATC 1 cut(s) 414
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 538
SsiI CCGC 7 cut(s) 39, 88, 100, 108, 214, 305, 323
SspMI CTAG 1 cut(s) 252
TaiI ACGT 2 cut(s) 75, 465
TaqI TCGA 3 cut(s) 366, 384, 432
TasI AATT 1 cut(s) 538
TauI GCSGC 4 cut(s) 91, 111, 308, 325
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 2 cut(s) 294, 335
Tsp45I GTSAC 2 cut(s) 294, 335
TspGWI ACGGA 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 1 cut(s) 252
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.