Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012962

Physical Location & Seq

Genomic Coordinates Forward (+)

862775 .. 863939

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGCTGCCGGAGCTGACGGGTTGTTCCGGTGTGGGGCATACGAGGGGTGCATTTCCGGCAGCGACGTAGGGAAGGAGAGGCGGCCGTACCACCGCAACTGCGGATGCGCTTTGCACAACAGGTCGGAGAACAAGAAGTACAGTCAGCAGCAGCAGCAGCAATGCACGCATGGAGGGCAGAAGAGTAAAAGCATATCGTATCCCATGAGGCGGGCATGGAGCGAAGGGAACTTGGGTTTGGTGGTGGCGAATGGTTCTTGTTGTTCAGGGCATTCCTCGCCTTCTTCGTCACCGGCTGCGGCTGCGGTGAGGCAGCCGCAGCCGGGGAGGCATCACCGGTTGGGTTCGGTGGGATCGGTGGGGTCGTTCGATCGGTTGAGTGCGTTTGAGGAGGAGGAAGAGGAAGAAGATATTGTCTTCTTTAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.53

Weight (kDa)

8.19

Isoelectric Point (pI)

68.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46490 AT5G35110
fragaria_vesca	FvH4_1g01610
malus_domestica	MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica	Prupe.7G253800_v2.0.a1
pyrus_communis	pycom15g14230
rosa_chinensis	RchiOBHm_Chr2g0086561
rosa_laevigata	RLG00000015767
rosa_multiflora	Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154440
rosa_rugosa	Rorug01G0467900
rosa_samantha	Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana	Rw2G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	85, 97, 105, 214, 302, 308, 320
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	86
AfaI	GTAC	2 cut(s)	92, 143
AfiI	CCNNNNNNNGG	3 cut(s)	37, 213, 326
AgeI	ACCGGT	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	86
AsiGI	ACCGGT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	285, 322, 329
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	9 cut(s)	75, 163, 166, 169, 172, 286, 292, 328, 334
BceAI	ACGGC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	98, 343
BpiI	GAAGAC	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	2 cut(s)	30, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 213, 326
Bse118I	RCCGGY	2 cut(s)	295, 339
Bse3DI	GCAATG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	3 cut(s)	37, 213, 326
BseMI	GCAATG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	407, 410
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	9 cut(s)	75, 163, 166, 169, 172, 286, 292, 328, 334
Bsh1285I	CGRYCG	2 cut(s)	89, 376
BshFI	GGCC	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	339
BsiEI	CGRYCG	2 cut(s)	89, 376
BsiSI	CCGG	6 cut(s)	12, 31, 60, 296, 326, 340
BslI	CCNNNNNNNGG	3 cut(s)	37, 213, 326
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	356, 373
BspACI	CCGC	7 cut(s)	85, 97, 105, 214, 302, 308, 320
BspANI	GGCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	295, 339
BssAI	RCCGGY	2 cut(s)	295, 339
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	356, 373
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	179, 396
BstC8I	GCNNGC	2 cut(s)	170, 216
BstF5I	GGATG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	359, 376
BstMBI	GATC	2 cut(s)	356, 373
BstMCI	CGRYCG	2 cut(s)	89, 376
BstSCI	CCNGG	1 cut(s)	325
BstV1I	GCAGC	9 cut(s)	75, 163, 166, 169, 172, 286, 292, 328, 334
BstV2I	GAAGAC	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	170, 216
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	2 cut(s)	295, 339
Csp6I	GTAC	2 cut(s)	91, 142
CspAI	ACCGGT	1 cut(s)	339
CviAII	CATG	3 cut(s)	173, 208, 219
CviJI	RGCY	7 cut(s)	5, 17, 88, 299, 305, 319, 325
CviKI_1	RGCY	7 cut(s)	5, 17, 88, 299, 305, 319, 325
CviQI	GTAC	2 cut(s)	91, 142
DpnI	GATC	2 cut(s)	358, 375
DpnII	GATC	2 cut(s)	356, 373
EaeI	YGGCCR	1 cut(s)	86
EagI	CGGCCG	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	179, 396
EarI	CTCTTC	2 cut(s)	179, 396
EclXI	CGGCCG	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	86
FaeI	CATG	3 cut(s)	176, 211, 222
FaiI	YATR	5 cut(s)	43, 174, 197, 209, 220
FatI	CATG	3 cut(s)	172, 207, 218
FauI	CCCGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	6 cut(s)	12, 31, 60, 296, 326, 340
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	176, 211, 222
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HpaII	CCGG	6 cut(s)	12, 31, 60, 296, 326, 340
HphI	GGTGA	3 cut(s)	285, 322, 329
Hpy188I	TCNGA	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	70, 221, 294
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	54, 118, 168
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	176, 211, 222
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	356, 373
LmnI	GCTCC	2 cut(s)	14, 222
LpnPI	CCDG	8 cut(s)	25, 44, 73, 109, 255, 309, 339, 353
Lsp1109I	GCAGC	9 cut(s)	75, 163, 166, 169, 172, 286, 292, 328, 334
LweI	GCATC	2 cut(s)	98, 343
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	2 cut(s)	358, 375
MboI	GATC	2 cut(s)	356, 373
MboII	GAAGA	6 cut(s)	196, 279, 412, 413, 419, 422
MmeI	TCCRAC	1 cut(s)	108
MseI	TTAA	1 cut(s)	426
MspI	CCGG	6 cut(s)	12, 31, 60, 296, 326, 340
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	356, 373
NlaIII	CATG	3 cut(s)	176, 211, 222
NmuCI	GTSAC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	287, 365
PctI	GAATGC	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	339
Ple19I	CGATCG	1 cut(s)	376
PsrI	GAACNNNNNNTAC	2 cut(s)	125, 157
PvuI	CGATCG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	92, 143
RsaNI	GTAC	2 cut(s)	91, 142
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	356, 373
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	4 cut(s)	19, 72, 128, 432
SfaNI	GCATC	2 cut(s)	98, 343
SsiI	CCGC	7 cut(s)	85, 97, 105, 214, 302, 308, 320
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	372
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	3 cut(s)	88, 305, 322
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	291
Tsp45I	GTSAC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.