AT2G46890

Phospholipid methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006054
Physical Location & Seq
Reverse (-)
19266664 .. 19268195
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46890.1

Sequence Viewer

Length: 969 bp
ATGAATCGGAATCTTAGAAACGCCATTGTCGCATTTCTTGCTCCACTTCCTTCTATCGTATTCTACCTCACCTTTCTCAGTAATTACTCTTCATCTTCCGATTCAGAGCTCTCTTCTATTCAATCATGGTGTTTGAATCATCCTCTTCTATTAGCAAACCTTCTCTTCTTCTTAAACGTCAATGTGCTCTTCTGGGTCATCGGTTTACTCCAATCTAGCCACTGGATGATCGATGTGTATTGGACAGTGATACCTGTAATGCTGGTTCATTACTTCGCTTCGCATCCATTGTCACAGTACAATAAGCTGAGATCCATGATTGTCATAACTCTGACATGGATTTGGAGCATTAGGTTGACTCATAACTACTTCCGGCGGGAAAATTGGGAATGGGGAGCTAGAGAAGACTGGAGGTTCAACGACTTACGGAAACAGTACGGGAAACACTGGTGGTGGCTCTCCTTCTTCTCTGTCTACGTTTCTCAGCAGATCTTCCTCATTGGGATATGTCTGCCTTTATATGTCATCCATTCCATTGATGAGCCACTAAACATCTGGGACTTCATTTCCTCGGCTATCTGTTTGACCGGAATCGTCATGGCGTACTTCGCAGACACACAGCTTCACGAGTTTGTAACCGGAAACCAAAAGCTCAAGGAGCAAGGAAAGCCCAAAATCCCCAATCTGGACTCGGGTTTGTGGCGTTACTCAAGACATCCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGGTCATATTTGCTTGGAACCTTGGTCAAGGGTGGACTTTGATTGGTGCATTGGTCAATACTCTGTGTCTGGTCTATGTAACGATCCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAGCTGAAGCTTATAGAGCATATCAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTCATGCTGCTGCTACTAAAGACAAGAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

322

Amino Acids

38.12

Weight (kDa)

9.27

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 64 - 303 1.1e-74 Protein of unknown function (DUF1295)
PEMT PF04191 193 - 293 2.2e-06 Phospholipid methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 474
AciI CCGC 1 cut(s) 376
AclWI GGATC 2 cut(s) 306, 832
AcuI CTGAAG 1 cut(s) 900
AfaI GTAC 3 cut(s) 299, 437, 605
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 4 cut(s) 122, 136, 418, 931
AluBI AGCT 7 cut(s) 109, 307, 398, 622, 652, 878, 884
AluI AGCT 7 cut(s) 109, 307, 398, 622, 652, 878, 884
Alw21I GWGCWC 2 cut(s) 111, 189
AlwI GGATC 2 cut(s) 306, 832
Ama87I CYCGRG 1 cut(s) 691
ApeKI GCWGC 2 cut(s) 941, 944
AsuHPI GGTGA 2 cut(s) 61, 871
AvaI CYCGRG 1 cut(s) 691
BanII GRGCYC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
BauI CACGAG 1 cut(s) 626
BbsI GAAGAC 2 cut(s) 411, 908
Bbv12I GWGCWC 2 cut(s) 111, 189
BbvI GCAGC 2 cut(s) 928, 931
BccI CCATC 1 cut(s) 850
BfaI CTAG 2 cut(s) 216, 399
BglII AGATCT 1 cut(s) 489
BisI GCNGC 2 cut(s) 942, 945
BlsI GCNGC 2 cut(s) 943, 946
BmeT110I CYCGRG 1 cut(s) 691
BmiI GGNNCC 1 cut(s) 773
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 411, 908
BpmI CTGGAG 1 cut(s) 430
BpuEI CTTGAG 2 cut(s) 638, 694
Bsa29I ATCGAT 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 570, 775, 923
BsaWI WCCGGW 2 cut(s) 587, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse1I ACTGG 3 cut(s) 227, 413, 452
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 570, 775, 923
BseGI GGATG 6 cut(s) 139, 231, 283, 525, 715, 861
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMII CTCAG 3 cut(s) 91, 299, 497
BseNI ACTGG 3 cut(s) 227, 413, 452
BseXI GCAGC 2 cut(s) 928, 931
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 2 cut(s) 111, 189
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 3 cut(s) 373, 588, 639
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 691
Bsp1286I GDGCHC 2 cut(s) 111, 189
Bsp143I GATC 4 cut(s) 228, 311, 489, 837
Bsp19I CCATGG 1 cut(s) 923
BspACI CCGC 1 cut(s) 376
BspCNI CTCAG 3 cut(s) 90, 300, 496
BspDI ATCGAT 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 773
BspPI GGATC 2 cut(s) 306, 832
BspQI GCTCTTC 1 cut(s) 194
BsrI ACTGG 3 cut(s) 227, 413, 452
BssECI CCNNGG 3 cut(s) 570, 775, 923
BssMI GATC 4 cut(s) 228, 311, 489, 837
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 2 cut(s) 775, 923
Bst2BI CACGAG 1 cut(s) 626
Bst4CI ACNGT 3 cut(s) 247, 297, 435
Bst6I CTCTTC 5 cut(s) 94, 118, 150, 170, 194
BstAPI GCANNNNNTGC 1 cut(s) 38
BstDEI CTNAG 4 cut(s) 14, 77, 308, 483
BstDSI CCRYGG 1 cut(s) 923
BstF5I GGATG 6 cut(s) 139, 231, 283, 525, 715, 861
BstKTI GATC 4 cut(s) 231, 314, 492, 840
BstMBI GATC 4 cut(s) 228, 311, 489, 837
BstMWI GCNNNNNNNGC 6 cut(s) 29, 38, 608, 658, 667, 890
BstV1I GCAGC 2 cut(s) 928, 931
BstV2I GAAGAC 2 cut(s) 411, 908
BstX2I RGATCY 2 cut(s) 311, 489
BstYI RGATCY 2 cut(s) 311, 489
Bsu15I ATCGAT 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 923
BtsCI GGATG 6 cut(s) 139, 231, 283, 525, 715, 861
BtsIMutI CAGTG 3 cut(s) 220, 252, 445
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 1 cut(s) 839
Csp6I GTAC 3 cut(s) 298, 436, 604
CspCI CAANNNNNGTGG 2 cut(s) 725, 760
CviAII CATG 6 cut(s) 126, 316, 336, 598, 924, 938
CviQI GTAC 3 cut(s) 298, 436, 604
DdeI CTNAG 4 cut(s) 14, 77, 308, 483
DpnI GATC 4 cut(s) 230, 313, 491, 839
DpnII GATC 4 cut(s) 228, 311, 489, 837
Eam1104I CTCTTC 5 cut(s) 94, 118, 150, 170, 194
EarI CTCTTC 5 cut(s) 94, 118, 150, 170, 194
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 775, 923
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 900
Eco88I CYCGRG 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 775, 923
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 775, 923
FaeI CATG 6 cut(s) 129, 319, 339, 601, 927, 941
FaqI GGGAC 1 cut(s) 572
FatI CATG 6 cut(s) 125, 315, 335, 597, 923, 937
FauI CCCGC 1 cut(s) 369
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 2 cut(s) 942, 945
FokI GGATG 6 cut(s) 126, 238, 270, 512, 702, 868
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 942, 945
FspBI CTAG 2 cut(s) 216, 399
GluI GCNGC 2 cut(s) 942, 945
GsuI CTGGAG 1 cut(s) 430
HapII CCGG 3 cut(s) 373, 588, 639
HgaI GACGC 1 cut(s) 839
Hin1II CATG 6 cut(s) 129, 319, 339, 601, 927, 941
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 8 cut(s) 4, 10, 101, 136, 358, 591, 689, 919
HpaII CCGG 3 cut(s) 373, 588, 639
HphI GGTGA 2 cut(s) 61, 871
Hpy166II GTNNAC 4 cut(s) 206, 357, 475, 789
Hpy188I TCNGA 6 cut(s) 9, 100, 106, 333, 855, 900
Hpy188III TCNNGA 3 cut(s) 626, 686, 711
Hpy8I GTNNAC 4 cut(s) 206, 357, 475, 789
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 3 cut(s) 60, 170, 472
HpyCH4III ACNGT 3 cut(s) 247, 297, 435
HpyCH4IV ACGT 2 cut(s) 177, 477
HpyCH4V TGCA 1 cut(s) 803
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 38, 608, 658, 667, 890
HpyF3I CTNAG 4 cut(s) 14, 77, 308, 483
HpySE526I ACGT 2 cut(s) 177, 477
Hsp92II CATG 6 cut(s) 129, 319, 339, 601, 927, 941
Kzo9I GATC 4 cut(s) 228, 311, 489, 837
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 4 cut(s) 46, 345, 395, 658
Lsp1109I GCAGC 2 cut(s) 928, 931
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 216, 399
MaeII ACGT 2 cut(s) 177, 477
MaeIII GTNAC 4 cut(s) 291, 634, 704, 832
MalI GATC 4 cut(s) 230, 313, 491, 839
MboI GATC 4 cut(s) 228, 311, 489, 837
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 2 cut(s) 311, 489
MhlI GDGCHC 2 cut(s) 111, 189
MluCI AATT 4 cut(s) 82, 382, 721, 737
MlyI GAGTC 2 cut(s) 352, 683
MmeI TCCRAC 1 cut(s) 833
MnlI CCTC 5 cut(s) 77, 153, 405, 506, 580
MseI TTAA 1 cut(s) 173
MspI CCGG 3 cut(s) 373, 588, 639
MunI CAATTG 1 cut(s) 737
MwoI GCNNNNNNNGC 6 cut(s) 29, 38, 608, 658, 667, 890
NcoI CCATGG 1 cut(s) 923
NdeII GATC 4 cut(s) 228, 311, 489, 837
NlaIII CATG 6 cut(s) 129, 319, 339, 601, 927, 941
NlaIV GGNNCC 1 cut(s) 773
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 194
PfeI GAWTC 6 cut(s) 4, 10, 101, 136, 591, 919
PkrI GCNGC 2 cut(s) 943, 946
PleI GAGTC 2 cut(s) 352, 683
PpsI GAGTC 2 cut(s) 352, 683
Psp124BI GAGCTC 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 773
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
PsuI RGATCY 2 cut(s) 311, 489
RsaI GTAC 3 cut(s) 299, 437, 605
RsaNI GTAC 3 cut(s) 298, 436, 604
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 942, 945
Sau3AI GATC 4 cut(s) 228, 311, 489, 837
SchI GAGTC 2 cut(s) 352, 683
SduI GDGCHC 2 cut(s) 111, 189
SfaNI GCATC 1 cut(s) 292
SmlI CTYRAG 2 cut(s) 653, 709
SmoI CTYRAG 2 cut(s) 653, 709
Sse9I AATT 4 cut(s) 82, 382, 721, 737
SsiI CCGC 1 cut(s) 376
SspMI CTAG 2 cut(s) 216, 399
SstI GAGCTC 1 cut(s) 111
StyI CCWWGG 2 cut(s) 775, 923
TaaI ACNGT 3 cut(s) 247, 297, 435
TaiI ACGT 2 cut(s) 180, 480
TaqI TCGA 2 cut(s) 231, 846
TasI AATT 4 cut(s) 82, 382, 721, 737
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 6 cut(s) 4, 10, 101, 136, 591, 919
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 3 cut(s) 227, 252, 452
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 941, 944
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 4 cut(s) 17, 81, 257, 553
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 3 cut(s) 227, 252, 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 552
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 2 cut(s) 216, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.