RLG00000027699

Protein of unknown function (DUF1295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006054
Physical Location & Seq
Forward (+)
14102446 .. 14104509
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027699

Sequence Viewer

Length: 975 bp
ATGGCTTCTAATAACGTCAAGAACGCAGTGGTTGCATTTCTAGCTCCCCTTCCCTCCATTCTCTTCTACCTCACATTCCTCCACAACCACCAAACCAGTAGTAGCCCTGAGGCTCTCTCTCCTATTTGGGCATGGTGTTATTACCACCCTCTTCTTTTAGCCAATGCCCTCTTCTTCTTCAACGTCAATGTCCTCTTCTGGGTCATCAGCCAAGTCCTCTCCAGCCATTGGATGATCGATTTGTATTGGACTGTGATTCCTGTAATGCTGGTTCATTACTACCGGACTCATCCTCTGGCTGATTTTAACTGGTGGCGGTCAACGATTGGAGTGGTGTTGACTTGGGTTTGGAGCGTAAGGCTGACCCATAACTATTTTAGGCGGGAAAATTGGCAATGGGGAGCCAGAGAGGACTGGAGGTTCACCGATATGAACTCACAGTACGGCAAACAGTGGTGGTGGATTTCTTTCTTTGCTGTTTATCTTTCTCAGCAGGTTTTTCTGATTGGAATATGCCTTCCTTTGTATGTGATCCACTCGGTTAATGTGCCATTGAACATGTGGGATTTTGTTGCCATCATTGTCTGCATTTCTGGTATTGTTGTTGCATACTTTGCCGATACGCAACTCCATGAGTTTGTGAGTCGAAACAATGAGTTTAAAAAGGTTGGGAAGCCGGTTGTGCCAAATCTTAATGAGGGGTTGTGGCGTTATTCACGACATCCCAACTATTTTGGAGAGCAGTTGTGGTGGTGGGGACTGGTTGTGTTTGCATGGAACCTGGGACAGGGGTGGACCTTTATCGGGTCTTTTGTCAATACCATGTGTTTGGCTTATGTGACGACGCTTGTGGAGAAGCGAATGCTGAAGCAAGATTTCAGAGCAGAAGCATACAGGCAGTATCAGAAGACTACCTCAGTGTGGATCCCTTGGTTCAAGTCATCTCCAACTGGAGAAAAAGATAAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

325

Amino Acids

38.49

Weight (kDa)

9.17

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 66 - 305 4.7e-64 Protein of unknown function (DUF1295)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 228
AciI CCGC 2 cut(s) 316, 382
AclWI GGATC 3 cut(s) 526, 919, 932
AcuI CTGAAG 1 cut(s) 887
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 5 cut(s) 199, 228, 787, 804, 921
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 181, 556, 937
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 2 cut(s) 44, 971
AluI AGCT 2 cut(s) 44, 971
AlwI GGATC 3 cut(s) 526, 919, 932
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 1 cut(s) 795
AxyI CCTNAGG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 914
BccI CCATC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 782
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 3 cut(s) 403, 779, 926
BmrFI CCNGG 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 914
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 3 cut(s) 205, 436, 972
Bsa29I ATCGAT 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 781, 929
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 5 cut(s) 199, 228, 787, 804, 921
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 5 cut(s) 96, 314, 419, 765, 955
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 782
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 781, 929
BseGI GGATG 3 cut(s) 237, 289, 721
BseLI CCNNNNNNNGG 5 cut(s) 199, 228, 787, 804, 921
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 3 cut(s) 99, 503, 930
BseNI ACTGG 5 cut(s) 96, 314, 419, 765, 955
BshVI ATCGAT 1 cut(s) 237
BsiSI CCGG 2 cut(s) 283, 677
BslFI GGGAC 2 cut(s) 771, 798
BslI CCNNNNNNNGG 5 cut(s) 199, 228, 787, 804, 921
BsmFI GGGAC 2 cut(s) 771, 798
BsmI GAATGC 1 cut(s) 867
Bsp143I GATC 3 cut(s) 234, 531, 924
BspACI CCGC 2 cut(s) 316, 382
BspCNI CTCAG 3 cut(s) 100, 502, 929
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 3 cut(s) 403, 779, 926
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 3 cut(s) 526, 919, 932
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 5 cut(s) 96, 314, 419, 765, 955
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 2 cut(s) 781, 929
BssMI GATC 3 cut(s) 234, 531, 924
BssT1I CCWWGG 1 cut(s) 929
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 253, 441, 453
Bst6I CTCTTC 4 cut(s) 68, 156, 176, 200
BstAPI GCANNNNNTGC 2 cut(s) 32, 614
BstDEI CTNAG 3 cut(s) 108, 489, 916
BstENI CCTNNNNNAGG 1 cut(s) 785
BstF5I GGATG 3 cut(s) 237, 289, 721
BstKTI GATC 3 cut(s) 237, 534, 927
BstMBI GATC 3 cut(s) 234, 531, 924
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 614, 682
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 780
BstV2I GAAGAC 1 cut(s) 914
BstX2I RGATCY 1 cut(s) 924
BstXI CCANNNNNNTGG 1 cut(s) 829
BstYI RGATCY 1 cut(s) 924
Bsu15I ATCGAT 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 3 cut(s) 237, 289, 721
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 3 cut(s) 33, 458, 924
BveI ACCTGC 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 853
Csp6I GTAC 1 cut(s) 442
CviAII CATG 5 cut(s) 132, 559, 632, 774, 823
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 3 cut(s) 108, 489, 916
DpnI GATC 3 cut(s) 236, 533, 926
DpnII GATC 3 cut(s) 234, 531, 924
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 4 cut(s) 68, 156, 176, 200
EarI CTCTTC 4 cut(s) 68, 156, 176, 200
Eco130I CCWWGG 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 929
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 5 cut(s) 135, 562, 635, 777, 826
FaqI GGGAC 2 cut(s) 771, 798
FatI CATG 5 cut(s) 131, 558, 631, 773, 822
FauI CCCGC 1 cut(s) 375
FokI GGATG 3 cut(s) 244, 276, 708
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 3 cut(s) 205, 436, 972
HapII CCGG 2 cut(s) 283, 677
HgaI GACGC 1 cut(s) 853
Hin1II CATG 5 cut(s) 135, 562, 635, 777, 826
HincII GTYRAC 2 cut(s) 321, 339
HindII GTYRAC 2 cut(s) 321, 339
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 3 cut(s) 256, 286, 643
HpaII CCGG 2 cut(s) 283, 677
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 4 cut(s) 321, 339, 423, 795
Hpy188I TCNGA 3 cut(s) 504, 881, 906
Hpy188III TCNNGA 2 cut(s) 19, 717
Hpy8I GTNNAC 4 cut(s) 321, 339, 423, 795
Hpy99I CGWCG 1 cut(s) 847
HpyAV CCTTC 2 cut(s) 59, 527
HpyCH4III ACNGT 3 cut(s) 253, 441, 453
HpyCH4IV ACGT 2 cut(s) 15, 183
HpyCH4V TGCA 4 cut(s) 35, 588, 608, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 614, 682
HpyF3I CTNAG 3 cut(s) 108, 489, 916
HpySE526I ACGT 2 cut(s) 15, 183
Hsp92II CATG 5 cut(s) 135, 562, 635, 777, 826
Kzo9I GATC 3 cut(s) 234, 531, 924
LmnI GCTCC 3 cut(s) 49, 351, 401
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 15, 183
MaeIII GTNAC 1 cut(s) 838
MalI GATC 3 cut(s) 236, 533, 926
MboI GATC 3 cut(s) 234, 531, 924
MboII GAAGA 7 cut(s) 55, 143, 163, 166, 169, 187, 919
MflI RGATCY 1 cut(s) 924
MluCI AATT 1 cut(s) 388
MlyI GAGTC 2 cut(s) 280, 652
MmeI TCCRAC 1 cut(s) 971
MseI TTAA 4 cut(s) 306, 543, 660, 693
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 2 cut(s) 283, 677
MspR9I CCNGG 1 cut(s) 782
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 1 cut(s) 782
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 614, 682
NdeII GATC 3 cut(s) 234, 531, 924
NlaIII CATG 5 cut(s) 135, 562, 635, 777, 826
NlaIV GGNNCC 3 cut(s) 403, 779, 926
NmuCI GTSAC 1 cut(s) 838
NspI RCATGY 1 cut(s) 562
PciI ACATGT 1 cut(s) 558
PctI GAATGC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 228
PleI GAGTC 2 cut(s) 280, 651
PpsI GAGTC 2 cut(s) 280, 651
PscI ACATGT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 3 cut(s) 403, 779, 926
PspPI GGNCC 1 cut(s) 795
PsrI GAACNNNNNNTAC 4 cut(s) 255, 287, 425, 457
PsuI RGATCY 1 cut(s) 924
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 4 cut(s) 306, 543, 660, 693
Sau3AI GATC 3 cut(s) 234, 531, 924
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 2 cut(s) 280, 652
ScrFI CCNGG 1 cut(s) 782
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 1 cut(s) 388
SsiI CCGC 2 cut(s) 316, 382
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 3 cut(s) 253, 441, 453
TaiI ACGT 2 cut(s) 18, 186
TaqI TCGA 2 cut(s) 237, 646
TasI AATT 1 cut(s) 388
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 4 cut(s) 306, 543, 660, 693
Tru9I TTAA 4 cut(s) 306, 543, 660, 693
TscAI CASTG 3 cut(s) 33, 458, 924
TseFI GTSAC 1 cut(s) 838
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 263, 446
TspRI CASTG 3 cut(s) 33, 458, 924
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 795
XagI CCTNNNNNAGG 1 cut(s) 785
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.