Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000124.1

Orthogroup ID

OG0006054

Physical Location & Seq

Genomic Coordinates Forward (+)

74235 .. 75409

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000124.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggctagtagtaacttgaagcatgcagtgatagcatttctagctcccattccctccattctcttctacctttcatttctcaacaaccagagtcaccaaaccagtagtactgggagtctgtctcccctttgggaatggtgctatcaccaccctcttctattagccaatgccctcttcttcctcaatgtcaatgtcctcttctgggtcatcagccaagtcttatctaatcactggatgatctctttgtattggacagtgataccagtaatgctagttcactactatagggctcaccctctggctgattatgattggtggcgctccattattgcaattttgatgacttgggtttggagcctcaggatggttcacaactattttaggcgggaaaattggcagtggagtgccagggaggattggcgattcaccaatatgacctcacaatacggcaagcactggtggtgggcttccttcttcgccatctatctctctcagcaggtttttctaattggactatgccttccaatgtatgtaatccactcagttaatgtgccactgaacatttgggattttgctgccatcatgatctgcatttctggcattgctatagcatactatgctgacacacaactctataactttgcaagtaagaacaagaagctaaaagcgctcggagagccagttgtggtcactcttgatgaggggttgtggcgttattcacgacatccgaactactttggagagcaattatggtggtggggactcgctatatttgcatggaacctcggacatggttggaccttcattggctctttcctcaatacaatgtgtttagctcatgtgacaaagcttgtggaacagcgaatgttagaacaggactacagagcagaagcatacaggcagtatcagaagacaacctcagtttggataccttggttcaaggcatccccaattggaggaaaagataagaaaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

325

Amino Acids

38.5

Weight (kDa)

9.14

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46890
fragaria_vesca	FvH4_7g18190 FvH4_7g18190 FvH4_7g18190
malus_domestica	MD07G1165100.v1.1
prunus_persica	Prupe.2G203800_v2.0.a1
pyrus_communis	pycom07g16020
rosa_chinensis	RchiOBHm_Chr1g0361831 RchiOBHm_Chr1g0361841
rosa_laevigata	RLG00000027699 RLG00000027700
rosa_multiflora	Rmu_ssc0000124.1_g000016 Rmu_ssc0000124.1_g000017 Rmu_ssc0000124.1_g000018
rosa_roxburghii	Rroxscaffold_4G00294660 Rroxscaffold_4G00294670
rosa_rugosa	Rorug01G0291500 Rorug01G0291600
rosa_samantha	Rh1AG302200 Rh1AG302400 Rh1BG265100 Rh1BG265200 Rh1CG283600 Rh1DG295100 Rh1DG295200
rosa_wichuraiana	Rw1G026780 Rw1G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	109
AfeI	AGCGCT	1 cut(s)	669
AfiI	CCNNNNNNNGG	4 cut(s)	202, 364, 924, 956
AgsI	TTSAA	2 cut(s)	19, 940
AjnI	CCWGG	1 cut(s)	407
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	44, 661, 836, 850
AluI	AGCT	4 cut(s)	44, 661, 836, 850
Alw26I	GTCTC	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	575
AspLEI	GCGC	2 cut(s)	321, 670
AspS9I	GGNCC	1 cut(s)	798
AsuHPI	GGTGA	4 cut(s)	86, 137, 284, 418
AvaII	GGWCC	1 cut(s)	798
AxyI	CCTNAGG	1 cut(s)	359
BaeI	ACNNNNGTAYC	2 cut(s)	920, 953
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	917
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	3 cut(s)	358, 488, 587
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	409
BciVI	GTATCC	1 cut(s)	921
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	3 cut(s)	6, 41, 272
BfmI	CTRYAG	3 cut(s)	283, 606, 880
BfoI	RGCGCY	2 cut(s)	322, 671
BfuAI	ACCTGC	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	921
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	2 cut(s)	356, 782
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	953
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	917
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BsaJI	CCNNGG	3 cut(s)	408, 784, 932
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 364, 924, 956
Bse1I	ACTGG	6 cut(s)	102, 115, 236, 263, 461, 680
Bse21I	CCTNAGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	3 cut(s)	408, 784, 932
BseGI	GGATG	4 cut(s)	240, 369, 724, 944
BseLI	CCNNNNNNNGG	4 cut(s)	202, 364, 924, 956
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	4 cut(s)	373, 506, 555, 933
BseNI	ACTGG	6 cut(s)	102, 115, 236, 263, 461, 680
BseXI	GCAGC	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	774
BslI	CCNNNNNNNGG	4 cut(s)	202, 364, 924, 956
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	774
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	237, 585
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	4 cut(s)	372, 505, 554, 932
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	356, 782
BspMI	ACCTGC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	6 cut(s)	102, 115, 236, 263, 461, 680
BssECI	CCNNGG	3 cut(s)	408, 784, 932
BssMI	GATC	2 cut(s)	237, 585
BssT1I	CCWWGG	1 cut(s)	932
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	4 cut(s)	68, 159, 179, 203
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	24, 452
BstDEI	CTNAG	5 cut(s)	359, 492, 541, 919, 975
BstF5I	GGATG	4 cut(s)	240, 369, 724, 944
BstH2I	RGCGCY	2 cut(s)	322, 671
BstHHI	GCGC	2 cut(s)	321, 670
BstKTI	GATC	2 cut(s)	240, 588
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	237, 585
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 597, 617, 667, 676, 773
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	407
BstSFI	CTRYAG	3 cut(s)	283, 606, 880
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	917
Bsu36I	CCTNAGG	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	921
BtsCI	GGATG	4 cut(s)	240, 369, 724, 944
BtsI	GCAGTG	2 cut(s)	33, 404
BtsIMutI	CAGTG	6 cut(s)	33, 229, 261, 404, 454, 554
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	24, 452
CciI	TCATGA	1 cut(s)	582
CfoI	GCGC	2 cut(s)	321, 670
Cfr13I	GGNCC	1 cut(s)	798
Csp6I	GTAC	1 cut(s)	108
CspCI	CAANNNNNGTGG	4 cut(s)	734, 769, 834, 869
CviAII	CATG	5 cut(s)	23, 583, 777, 791, 839
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	5 cut(s)	359, 492, 541, 919, 975
DpnI	GATC	2 cut(s)	239, 587
DpnII	GATC	2 cut(s)	237, 585
Eam1104I	CTCTTC	4 cut(s)	68, 159, 179, 203
EarI	CTCTTC	4 cut(s)	68, 159, 179, 203
Eco130I	CCWWGG	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	798
Eco47III	AGCGCT	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	932
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	5 cut(s)	26, 586, 780, 794, 842
FaqI	GGGAC	1 cut(s)	774
FatI	CATG	5 cut(s)	22, 582, 776, 790, 838
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	4 cut(s)	247, 376, 711, 931
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	3 cut(s)	6, 41, 272
GlaI	GCGC	2 cut(s)	320, 669
GluI	GCNGC	1 cut(s)	576
HaeII	RGCGCY	2 cut(s)	322, 671
HhaI	GCGC	2 cut(s)	321, 670
Hin1II	CATG	5 cut(s)	26, 586, 780, 794, 842
Hin6I	GCGC	2 cut(s)	319, 668
HinP1I	GCGC	2 cut(s)	319, 668
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	4 cut(s)	91, 115, 423, 762
HphI	GGTGA	4 cut(s)	86, 137, 284, 418
Hpy166II	GTNNAC	2 cut(s)	277, 370
Hpy188I	TCNGA	4 cut(s)	674, 729, 788, 909
Hpy188III	TCNNGA	4 cut(s)	361, 583, 695, 720
Hpy8I	GTNNAC	2 cut(s)	277, 370
HpyAV	CCTTC	3 cut(s)	481, 530, 811
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	5 cut(s)	26, 332, 591, 644, 776
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 597, 617, 667, 676, 773
HpyF3I	CTNAG	5 cut(s)	359, 492, 541, 919, 975
Hsp92II	CATG	5 cut(s)	26, 586, 780, 794, 842
HspAI	GCGC	2 cut(s)	319, 668
Kzo9I	GATC	2 cut(s)	237, 585
LmnI	GCTCC	3 cut(s)	49, 326, 354
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	1 cut(s)	953
MaeI	CTAG	3 cut(s)	6, 41, 272
MaeIII	GTNAC	4 cut(s)	11, 92, 688, 841
MalI	GATC	2 cut(s)	239, 587
MboI	GATC	2 cut(s)	237, 585
MboII	GAAGA	7 cut(s)	55, 146, 166, 169, 190, 466, 922
MfeI	CAATTG	1 cut(s)	951
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	5 cut(s)	333, 391, 507, 746, 951
MlyI	GAGTC	3 cut(s)	100, 124, 756
MmeI	TCCRAC	1 cut(s)	776
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	409
MunI	CAATTG	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 597, 617, 667, 676, 773
NdeII	GATC	2 cut(s)	237, 585
NlaIII	CATG	5 cut(s)	26, 586, 780, 794, 842
NlaIV	GGNNCC	2 cut(s)	356, 782
NmuCI	GTSAC	3 cut(s)	92, 688, 841
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PagI	TCATGA	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	3 cut(s)	99, 123, 756
PpsI	GAGTC	3 cut(s)	99, 123, 756
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	356, 782
PspPI	GGNCC	1 cut(s)	798
PsrI	GAACNNNNNNTAC	2 cut(s)	258, 290
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	237, 585
Sau96I	GGNCC	1 cut(s)	798
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	3 cut(s)	100, 124, 756
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	953
SfcI	CTRYAG	3 cut(s)	283, 606, 880
SinI	GGWCC	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	5 cut(s)	333, 391, 507, 746, 951
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	3 cut(s)	6, 41, 272
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	1 cut(s)	256
TasI	AATT	5 cut(s)	333, 391, 507, 746, 951
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	6 cut(s)	33, 236, 261, 404, 461, 561
TseFI	GTSAC	3 cut(s)	92, 688, 841
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	3 cut(s)	92, 688, 841
TspDTI	ATGAA	2 cut(s)	63, 793
TspRI	CASTG	6 cut(s)	33, 236, 261, 404, 461, 561
VpaK11BI	GGWCC	1 cut(s)	798
XceI	RCATGY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XspI	CTAG	3 cut(s)	6, 41, 272
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.