Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006054

Physical Location & Seq

Genomic Coordinates Reverse (-)

18521137 .. 18522489

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAACTATAAAACTAGGCCTCTATTGTCTATTCCTTCATTGGTAATTGGATTTACTGCGGCCATGGCTGGAGGCAACTTGAAGAATGCAGTGATAGCATTTCTCGCTCCCCTTCCCTCCATTCTCTTCTACCTCATATTCCTCAGCAACCACCATAGCCAAACTAATGAGAGCTTCCTCTCTCCTCTCTGGACATGGTGCTATCACCACCCTCTTCTCCTAGCCAACGTTTTCTTCTTCCTCAACGTGAACGTCCTCTTCTGGGTCATCAGCCAAGCTCTTTCCAGCCACTGGATGATCGATTTGTACTGGACTGTGATCCCTGTAATGCTCGTTCACTACTATGGATCTCACCCTCTGGCTGATTACAACCGGTGGCGGTCGACGATTGCAATTTCGCTGACTTGGGTTTGGAGCCTCAGGCTTAGCCACAACTACTTTAGGCGGGAAAATTGGCAATGGGGTGCCAGGGAGGACTGGCGGTTCACAGATATGAGCTCACAGTACGGCAAACATTGGTGGTGGGTTTCCTTCTTCGCCGTTTACCTCTCTCAACAGGTTTTTATAATTGGGATATGCCTTCCATTCTATGTAATCCACTCAGTTAATGTGCCACTGAACATATGGGATTTTGTTGCCGTCGTAGTCTGCATTACTGGCATTGTTGTAGCATACTTAGCTGACACGCAGCTCCATGACTTTGTGAACCGAAACAACAAGCTGAAAGAGCTTGGAAAGCCCGTTGTTCCGAATCTTGACGAAGGGTTGTGGCACTATTCGCGGCATCCCAACTACTTCGGAGAGCAATTGTGGTGGTGGGGATTAGTCATATTTGCATGGAACTTGGGACATGGATGGGCCTTTGTTGGGTCTCTGGTCAATACAATGTGTTTAGCTTATGTGACTATACTTGTCGAACGCCGAATGCTGAAACAAGAATACCGAGTAGAAGCATACAGGCGGTATCAGAAGACAACCTCAGTGTGGATACCTTGGTTCAAGTCATCTCCAGGAGGAAAAGATAAGAACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

345

Amino Acids

40.5

Weight (kDa)

9.25

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46890
fragaria_vesca	FvH4_7g18190 FvH4_7g18190 FvH4_7g18190
malus_domestica	MD07G1165100.v1.1
prunus_persica	Prupe.2G203800_v2.0.a1
pyrus_communis	pycom07g16020
rosa_chinensis	RchiOBHm_Chr1g0361831 RchiOBHm_Chr1g0361841
rosa_laevigata	RLG00000027699 RLG00000027700
rosa_multiflora	Rmu_ssc0000124.1_g000016 Rmu_ssc0000124.1_g000017 Rmu_ssc0000124.1_g000018
rosa_roxburghii	Rroxscaffold_4G00294660 Rroxscaffold_4G00294670
rosa_rugosa	Rorug01G0291500 Rorug01G0291600
rosa_samantha	Rh1AG302200 Rh1AG302400 Rh1BG265100 Rh1BG265200 Rh1CG283600 Rh1DG295100 Rh1DG295200
rosa_wichuraiana	Rw1G026780 Rw1G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	383
AccII	CGCG	1 cut(s)	781
AciI	CCGC	6 cut(s)	59, 379, 445, 481, 781, 961
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	2 cut(s)	313, 355
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	2 cut(s)	308, 506
AfiI	CCNNNNNNNGG	4 cut(s)	262, 291, 867, 984
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	82, 1000
AjnI	CCWGG	2 cut(s)	467, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	8 cut(s)	174, 278, 498, 680, 691, 721, 730, 896
AluI	AGCT	8 cut(s)	174, 278, 498, 680, 691, 721, 730, 896
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	876
AlwI	GGATC	2 cut(s)	313, 355
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	3 cut(s)	17, 60, 858
ApeKI	GCWGC	1 cut(s)	688
AsiGI	ACCGGT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	858
AsuHPI	GGTGA	2 cut(s)	197, 344
AxyI	CCTNAGG	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	980, 1013
BanI	GGYRCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	977
Bbv12I	GWGCWC	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	1 cut(s)	849
BceAI	ACGGC	3 cut(s)	523, 524, 623
BciT130I	CCWGG	2 cut(s)	469, 1011
BciVI	GTATCC	1 cut(s)	981
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	2 cut(s)	15, 221
BfuI	GTATCC	1 cut(s)	981
BisI	GCNGC	3 cut(s)	60, 689, 782
BlpI	GCTNAGC	1 cut(s)	425
BlsI	GCNGC	3 cut(s)	61, 690, 783
Bme1390I	CCNGG	2 cut(s)	469, 1011
BmgT120I	GGNCC	1 cut(s)	858
BmiI	GGNNCC	2 cut(s)	416, 466
BmrFI	CCNGG	2 cut(s)	469, 1011
BmsI	GCATC	1 cut(s)	793
BpiI	GAAGAC	1 cut(s)	977
BpmI	CTGGAG	2 cut(s)	90, 993
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	63, 468, 992
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 291, 867, 984
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	4 cut(s)	296, 314, 482, 661
Bse21I	CCTNAGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	469, 1011
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	63, 468, 992
BseGI	GGATG	3 cut(s)	300, 784, 860
BseLI	CCNNNNNNNGG	4 cut(s)	262, 291, 867, 984
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	4 cut(s)	157, 433, 615, 993
BseNI	ACTGG	4 cut(s)	296, 314, 482, 661
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	700
Bsh1236I	CGCG	1 cut(s)	781
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	3 cut(s)	19, 62, 860
BshNI	GGYRCC	1 cut(s)	464
BshTI	ACCGGT	1 cut(s)	372
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	4 cut(s)	262, 291, 867, 984
BsmAI	GTCTC	1 cut(s)	876
BsmFI	GGGAC	1 cut(s)	861
BsmI	GAATGC	2 cut(s)	91, 930
BsnI	GGCC	3 cut(s)	19, 62, 860
Bso31I	GGTCTC	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	297, 318, 347
Bsp1720I	GCTNAGC	1 cut(s)	425
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	6 cut(s)	59, 379, 445, 481, 781, 961
BspANI	GGCC	3 cut(s)	19, 62, 860
BspCNI	CTCAG	4 cut(s)	156, 432, 614, 992
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	416, 466
BspPI	GGATC	2 cut(s)	313, 355
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	4 cut(s)	296, 314, 482, 661
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	63, 468, 992
BssMI	GATC	3 cut(s)	297, 318, 347
BssT1I	CCWWGG	2 cut(s)	63, 992
Bst2UI	CCWGG	2 cut(s)	469, 1011
Bst4CI	ACNGT	2 cut(s)	316, 504
Bst6I	CTCTTC	3 cut(s)	131, 219, 263
BstDEI	CTNAG	6 cut(s)	143, 419, 425, 601, 676, 979
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	300, 784, 860
BstFNI	CGCG	1 cut(s)	781
BstKTI	GATC	3 cut(s)	300, 321, 350
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	3 cut(s)	297, 318, 347
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 95, 104, 657, 677, 727, 736, 778
BstNI	CCWGG	2 cut(s)	469, 1011
BstSCI	CCNGG	2 cut(s)	467, 1009
BstUI	CGCG	1 cut(s)	781
BstV1I	GCAGC	1 cut(s)	700
BstV2I	GAAGAC	1 cut(s)	977
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	3 cut(s)	19, 62, 860
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	300, 784, 860
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	4 cut(s)	96, 289, 614, 987
CaiI	CAGNNNCTG	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	858
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	307, 505
CspAI	ACCGGT	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	794, 829
CviAII	CATG	5 cut(s)	64, 195, 695, 837, 851
CviQI	GTAC	2 cut(s)	307, 505
DdeI	CTNAG	6 cut(s)	143, 419, 425, 601, 676, 979
DpnI	GATC	3 cut(s)	299, 320, 349
DpnII	GATC	3 cut(s)	297, 318, 347
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	131, 219, 263
EarI	CTCTTC	3 cut(s)	131, 219, 263
Ecl136II	GAGCTC	1 cut(s)	498
Eco130I	CCWWGG	2 cut(s)	63, 992
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	876
Eco53kI	GAGCTC	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	467, 1009
EcoT14I	CCWWGG	2 cut(s)	63, 992
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	2 cut(s)	63, 992
FaeI	CATG	5 cut(s)	67, 198, 698, 840, 854
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	5 cut(s)	63, 194, 694, 836, 850
FauI	CCCGC	1 cut(s)	438
FauNDI	CATATG	1 cut(s)	623
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	60, 689, 782
FokI	GGATG	3 cut(s)	307, 771, 867
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	3 cut(s)	60, 689, 782
FspBI	CTAG	2 cut(s)	15, 221
GluI	GCNGC	3 cut(s)	60, 689, 782
GsuI	CTGGAG	2 cut(s)	90, 993
HaeIII	GGCC	3 cut(s)	19, 62, 860
HapII	CCGG	1 cut(s)	373
Hin1II	CATG	5 cut(s)	67, 198, 698, 840, 854
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	1 cut(s)	751
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	2 cut(s)	197, 344
Hpy166II	GTNNAC	6 cut(s)	250, 337, 384, 486, 544, 706
Hpy188I	TCNGA	3 cut(s)	750, 800, 969
Hpy188III	TCNNGA	2 cut(s)	190, 755
Hpy8I	GTNNAC	6 cut(s)	250, 337, 384, 486, 544, 706
Hpy99I	CGWCG	2 cut(s)	388, 644
HpyAV	CCTTC	5 cut(s)	45, 122, 541, 590, 755
HpyCH4III	ACNGT	2 cut(s)	316, 504
HpyCH4IV	ACGT	3 cut(s)	228, 246, 252
HpyCH4V	TGCA	4 cut(s)	89, 392, 651, 836
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 95, 104, 657, 677, 727, 736, 778
HpyF3I	CTNAG	6 cut(s)	143, 419, 425, 601, 676, 979
HpySE526I	ACGT	3 cut(s)	228, 246, 252
Hsp92II	CATG	5 cut(s)	67, 198, 698, 840, 854
Kzo9I	GATC	3 cut(s)	297, 318, 347
LmnI	GCTCC	3 cut(s)	112, 414, 696
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	2 cut(s)	15, 221
MaeII	ACGT	3 cut(s)	228, 246, 252
MaeIII	GTNAC	1 cut(s)	901
MalI	GATC	3 cut(s)	299, 320, 349
MboI	GATC	3 cut(s)	297, 318, 347
MboII	GAAGA	8 cut(s)	94, 118, 206, 226, 229, 250, 526, 982
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	5 cut(s)	45, 393, 451, 567, 806
MseI	TTAA	2 cut(s)	606, 1033
MslI	CAYNNNNRTG	2 cut(s)	342, 491
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	469, 1011
MunI	CAATTG	1 cut(s)	806
Mva1269I	GAATGC	2 cut(s)	91, 930
MvaI	CCWGG	2 cut(s)	469, 1011
MvnI	CGCG	1 cut(s)	781
MwoI	GCNNNNNNNGC	8 cut(s)	65, 95, 104, 657, 677, 727, 736, 778
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	3 cut(s)	297, 318, 347
NlaIII	CATG	5 cut(s)	67, 198, 698, 840, 854
NlaIV	GGNNCC	2 cut(s)	416, 466
NmuCI	GTSAC	1 cut(s)	901
PceI	AGGCCT	1 cut(s)	19
PctI	GAATGC	2 cut(s)	91, 930
PfeI	GAWTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	291
PfoI	TCCNGGA	1 cut(s)	1009
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	61, 690, 783
PsiI	TTATAA	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	500
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	467, 1009
PspGI	CCWGG	2 cut(s)	467, 1009
PspN4I	GGNNCC	2 cut(s)	416, 466
PspPI	GGNCC	1 cut(s)	858
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	2 cut(s)	308, 506
RsaNI	GTAC	2 cut(s)	307, 505
RseI	CAYNNNNRTG	2 cut(s)	342, 491
SacI	GAGCTC	1 cut(s)	500
SalI	GTCGAC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	606, 1033
SatI	GCNGC	3 cut(s)	60, 689, 782
Sau3AI	GATC	3 cut(s)	297, 318, 347
Sau96I	GGNCC	1 cut(s)	858
ScrFI	CCNGG	2 cut(s)	469, 1011
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	1 cut(s)	793
SmiMI	CAYNNNNRTG	2 cut(s)	342, 491
Sse9I	AATT	5 cut(s)	45, 393, 451, 567, 806
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	6 cut(s)	59, 379, 445, 481, 781, 961
SspMI	CTAG	2 cut(s)	15, 221
SstI	GAGCTC	1 cut(s)	500
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	467, 1009
StyI	CCWWGG	2 cut(s)	63, 992
TaaI	ACNGT	2 cut(s)	316, 504
TaiI	ACGT	3 cut(s)	231, 249, 255
TaqI	TCGA	3 cut(s)	300, 383, 915
TasI	AATT	5 cut(s)	45, 393, 451, 567, 806
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	2 cut(s)	62, 784
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	2 cut(s)	606, 1033
Tru9I	TTAA	2 cut(s)	606, 1033
TscAI	CASTG	4 cut(s)	96, 296, 621, 987
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	2 cut(s)	17, 27
TspRI	CASTG	4 cut(s)	96, 296, 621, 987
Van91I	CCANNNNNTGG	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	2 cut(s)	15, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.