Rh1AG302200

Protein of unknown function (DUF1295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006054
Physical Location & Seq
Reverse (-)
53448372 .. 53449567
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG302200.1

Sequence Viewer

Length: 999 bp
ATGTACTTGCAAGTTACAACCATGGCTAGTAGTAACTTGAAGCATGCAGTGATAGCATTTCTAGCTCCCATTCCCTCCATTCTCTTCTACCTTTCATTTCTCAACAACCAGAGTCACCAAACCAGTAGTACTGGGAGTCTGTCTCCCCTTTGGGAATGGTGCTATCACCACCCTCTTCTATTAGCCAATGCCCTCTTCTTCCTCAATGTCAATGTCCTCTTCTGGGTCATCAGCCAAGTCTTATCTAATCACTGGATGATCTCTTTGTACTGGACAGTGATACCAGTAATGCTAGTTCACTACTATAGGGCTCACCCTCAGGCTGATTATGATTGGTGGCGCTCCATTATTGCAATTTTGATGACTTGGGTTTGGAGCCTCAGGATGGTTCACAACTATTTTAGGCGGGAAAATTGGCAGTGGAGTGCCAGGGAGGATTGGCGATTCACCAATATGACCTCACAATACGGCAAGCACTGGTGGTGGGCTTCCTTCTTCGCCATCTATCTCTCTCAGCAGGTTTTTCTAATTGGACTATGCCTTCCAATGTATGTAATCCACTCAGTTAATGTGCCACTGAACATTTGGGATTTTGCTGCCATCATGATCTGCATTTCTGGCATTGCTATAGCATACTATGCTGACACACAACTCTATAACTTTGCAAGTAAGAACAAGAAGCTAAAAGCGCTCGGAGAGCCAGTTGTGGTCACTCTTGACGAGGGGTTGTGGTGTTATTCACGACATCCGAACTACTTTGGAGAGCAATTATGGTGGTGGGGACTCGCTATATTTGCATGGAACCTCGGACATGGTTGGACCTTCATTGGCTCTTTCCTCAATACAATGTGTTTAGCTTATGTGACAAAGCTTGTGGAACAGCGAATGTTAGAACAGGACTACAGAGCAGAGGCATACAGGCAGTATCAGAAGACAACCTCAGTTTGGATACCTTGGTTCAAGGCATCCTCAATTGGAGGAAAAGATAAGAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

332

Amino Acids

39.31

Weight (kDa)

8.95

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 74 - 313 9.8e-59 Protein of unknown function (DUF1295)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
AciI CCGC 1 cut(s) 406
AfaI GTAC 3 cut(s) 5, 130, 269
AfeI AGCGCT 1 cut(s) 690
AfiI CCNNNNNNNGG 3 cut(s) 223, 385, 945
AgsI TTSAA 2 cut(s) 40, 961
AjnI CCWGG 1 cut(s) 428
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 65, 682, 857, 871
AluI AGCT 4 cut(s) 65, 682, 857, 871
Alw26I GTCTC 1 cut(s) 147
Aor51HI AGCGCT 1 cut(s) 690
ApeKI GCWGC 1 cut(s) 596
AspLEI GCGC 2 cut(s) 342, 691
AspS9I GGNCC 1 cut(s) 819
AsuHPI GGTGA 4 cut(s) 107, 158, 305, 439
AvaII GGWCC 1 cut(s) 819
AxyI CCTNAGG 2 cut(s) 318, 380
BaeI ACNNNNGTAYC 2 cut(s) 941, 974
BanII GRGCYC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 938
BbvI GCAGC 1 cut(s) 583
BccI CCATC 3 cut(s) 379, 509, 608
BceAI ACGGC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 430
BciVI GTATCC 1 cut(s) 942
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 3 cut(s) 27, 62, 293
BfmI CTRYAG 3 cut(s) 304, 627, 901
BfoI RGCGCY 2 cut(s) 343, 692
BfuAI ACCTGC 1 cut(s) 508
BfuI GTATCC 1 cut(s) 942
BisI GCNGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 598
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 819
BmiI GGNNCC 2 cut(s) 377, 803
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 974
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BsaJI CCNNGG 4 cut(s) 21, 429, 805, 953
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 385, 945
Bse1I ACTGG 7 cut(s) 123, 136, 257, 275, 284, 482, 701
Bse21I CCTNAGG 2 cut(s) 318, 380
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 21, 429, 805, 953
BseGI GGATG 4 cut(s) 261, 390, 745, 965
BseLI CCNNNNNNNGG 3 cut(s) 223, 385, 945
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 5 cut(s) 332, 394, 527, 576, 954
BseNI ACTGG 7 cut(s) 123, 136, 257, 275, 284, 482, 701
BseXI GCAGC 1 cut(s) 583
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 3 cut(s) 223, 385, 945
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 258, 606
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 406
BspCNI CTCAG 5 cut(s) 331, 393, 526, 575, 953
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 377, 803
BspMI ACCTGC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 621
BsrI ACTGG 7 cut(s) 123, 136, 257, 275, 284, 482, 701
BssECI CCNNGG 4 cut(s) 21, 429, 805, 953
BssMI GATC 2 cut(s) 258, 606
BssT1I CCWWGG 2 cut(s) 21, 953
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 4 cut(s) 89, 180, 200, 224
BstAPI GCANNNNNTGC 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 45, 473
BstDEI CTNAG 6 cut(s) 318, 380, 513, 562, 940, 996
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 4 cut(s) 261, 390, 745, 965
BstH2I RGCGCY 2 cut(s) 343, 692
BstHHI GCGC 2 cut(s) 342, 691
BstKTI GATC 2 cut(s) 261, 609
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 258, 606
BstMWI GCNNNNNNNGC 7 cut(s) 53, 62, 618, 638, 688, 697, 794
BstNI CCWGG 1 cut(s) 430
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 3 cut(s) 304, 627, 901
BstV1I GCAGC 1 cut(s) 583
BstV2I GAAGAC 1 cut(s) 938
Bsu36I CCTNAGG 2 cut(s) 318, 380
BsuI GTATCC 1 cut(s) 942
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 4 cut(s) 261, 390, 745, 965
BtsI GCAGTG 2 cut(s) 54, 425
BtsIMutI CAGTG 6 cut(s) 54, 250, 282, 425, 475, 575
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 45, 473
CciI TCATGA 1 cut(s) 603
CfoI GCGC 2 cut(s) 342, 691
Cfr13I GGNCC 1 cut(s) 819
Csp6I GTAC 3 cut(s) 4, 129, 268
CspCI CAANNNNNGTGG 4 cut(s) 755, 790, 855, 890
CviAII CATG 5 cut(s) 22, 44, 604, 798, 812
CviQI GTAC 3 cut(s) 4, 129, 268
DdeI CTNAG 6 cut(s) 318, 380, 513, 562, 940, 996
DpnI GATC 2 cut(s) 260, 608
DpnII GATC 2 cut(s) 258, 606
Eam1104I CTCTTC 4 cut(s) 89, 180, 200, 224
EarI CTCTTC 4 cut(s) 89, 180, 200, 224
Eco130I CCWWGG 2 cut(s) 21, 953
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 819
Eco47III AGCGCT 1 cut(s) 690
Eco81I CCTNAGG 2 cut(s) 318, 380
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 2 cut(s) 21, 953
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 21, 953
FaeI CATG 5 cut(s) 25, 47, 607, 801, 815
FaqI GGGAC 1 cut(s) 795
FatI CATG 5 cut(s) 21, 43, 603, 797, 811
FauI CCCGC 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 4 cut(s) 268, 397, 732, 952
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 597
FspBI CTAG 3 cut(s) 27, 62, 293
GlaI GCGC 2 cut(s) 341, 690
GluI GCNGC 1 cut(s) 597
HaeII RGCGCY 2 cut(s) 343, 692
HhaI GCGC 2 cut(s) 342, 691
Hin1II CATG 5 cut(s) 25, 47, 607, 801, 815
Hin6I GCGC 2 cut(s) 340, 689
HinP1I GCGC 2 cut(s) 340, 689
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 4 cut(s) 112, 136, 444, 783
HphI GGTGA 4 cut(s) 107, 158, 305, 439
Hpy166II GTNNAC 2 cut(s) 298, 391
Hpy188I TCNGA 4 cut(s) 695, 750, 809, 930
Hpy188III TCNNGA 4 cut(s) 382, 604, 716, 741
Hpy8I GTNNAC 2 cut(s) 298, 391
HpyAV CCTTC 3 cut(s) 502, 551, 832
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 6 cut(s) 10, 47, 353, 612, 665, 797
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 62, 618, 638, 688, 697, 794
HpyF3I CTNAG 6 cut(s) 318, 380, 513, 562, 940, 996
Hsp92II CATG 5 cut(s) 25, 47, 607, 801, 815
HspAI GCGC 2 cut(s) 340, 689
Kzo9I GATC 2 cut(s) 258, 606
LmnI GCTCC 3 cut(s) 70, 347, 375
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 1 cut(s) 974
MaeI CTAG 3 cut(s) 27, 62, 293
MaeIII GTNAC 5 cut(s) 13, 32, 113, 709, 862
MalI GATC 2 cut(s) 260, 608
MboI GATC 2 cut(s) 258, 606
MboII GAAGA 7 cut(s) 76, 167, 187, 190, 211, 487, 943
MfeI CAATTG 1 cut(s) 972
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 354, 412, 528, 767, 972
MlyI GAGTC 3 cut(s) 121, 145, 777
MmeI TCCRAC 1 cut(s) 797
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 430
MunI CAATTG 1 cut(s) 972
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 7 cut(s) 53, 62, 618, 638, 688, 697, 794
NcoI CCATGG 1 cut(s) 21
NdeII GATC 2 cut(s) 258, 606
NlaIII CATG 5 cut(s) 25, 47, 607, 801, 815
NlaIV GGNNCC 2 cut(s) 377, 803
NmuCI GTSAC 3 cut(s) 113, 709, 862
NspI RCATGY 1 cut(s) 47
PaeI GCATGC 1 cut(s) 47
PagI TCATGA 1 cut(s) 603
PfeI GAWTC 1 cut(s) 444
PkrI GCNGC 1 cut(s) 598
PleI GAGTC 3 cut(s) 120, 144, 777
PpsI GAGTC 3 cut(s) 120, 144, 777
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 377, 803
PspPI GGNCC 1 cut(s) 819
PsrI GAACNNNNNNTAC 2 cut(s) 279, 311
RsaI GTAC 3 cut(s) 5, 130, 269
RsaNI GTAC 3 cut(s) 4, 129, 268
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 2 cut(s) 258, 606
Sau96I GGNCC 1 cut(s) 819
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 3 cut(s) 121, 145, 777
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 974
SfcI CTRYAG 3 cut(s) 304, 627, 901
SinI GGWCC 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 452
SphI GCATGC 1 cut(s) 47
Sse9I AATT 5 cut(s) 354, 412, 528, 767, 972
SsiI CCGC 1 cut(s) 406
SspMI CTAG 3 cut(s) 27, 62, 293
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 2 cut(s) 21, 953
TaaI ACNGT 1 cut(s) 277
TasI AATT 5 cut(s) 354, 412, 528, 767, 972
TatI WGTACW 3 cut(s) 3, 128, 267
TfiI GAWTC 1 cut(s) 444
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 6 cut(s) 54, 257, 282, 425, 482, 582
TseFI GTSAC 3 cut(s) 113, 709, 862
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 3 cut(s) 113, 709, 862
TspDTI ATGAA 2 cut(s) 84, 814
TspRI CASTG 6 cut(s) 54, 257, 282, 425, 482, 582
VpaK11BI GGWCC 1 cut(s) 819
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 582
XspI CTAG 3 cut(s) 27, 62, 293
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.