Rroxscaffold_4G00294670

Protein of unknown function (DUF1295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006054
Physical Location & Seq
Forward (+)
14682526 .. 14683703
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294670.1

Sequence Viewer

Length: 975 bp
ATGGCTTCTAATAACGTCAAGAACGCAGTGGTTGCATTTCTAGCTCCCCTTCCCTCCATTCTCTTCTACCTCACATTCCTCCACAACCACCAAACCAGTAGTAGCCCTGAGGCTCTCTCTCCTGTTTGGGCATGGTGTTATCACCACCCTCTTCTTTTAGCCAATGCCCTCTTCTTCTTCAACGTCAACGTCCTCTTCTGGGTCATCAGCCAAGTCCTCTCCAGCCATTGGATGATCGATTTGTATTGGACTGTGATACCCGTAATGCTGGTTCATTACTACCGGACTCACCCTCTGGCTGATTTTAACTGGTGGCGGTCAACGATTGGAGTGGTGTTGACTTGGGTTTGGAGCGTAAGGCTGACCCATAACTATTTTAGGCGGGAAAATTGGCAATGGGGAGCCAGAGAGGACTGGAGGTTCACTGATATGAGCTCACAGTACGGCAAACAGTGGTGGTGGATTTCTTTCTTTGCTGTTTATCTTTCTCAGCAGGTTTTTCTGATTGGAATATGCCTTCCTTTGTATGTGATCCACTCGGTTAATGTGCCATTGAACATGTGGGACTTTGTTGCCATCTTTGTCTGCATTTCTGGTATTGTTGTTGCATACTTTGCCGATACGCAACTTCATGAGTTTGTGAGTCGAAACAATGAGTTTAAAAAGGTTGGGAAGCCGGTTGTGCCAAATCTTGATGAGGGGTTGTGGCGTTTTTCGCGACATCCCAACTATTTTGGAGAGCAGTTGTGGTGGTGGGGACTGGTTGTGTTTGCATGGAACCTAGGACAAGGGTGGACCTTTATCGGGTCTTTTGTCAATACAATGTGTTTGGCTTATGTGACGACGCTTGTGGAGAAGCGAATGCTGAAGCAAGATTTCAGAGCAGAAGCATACAGGCAGTATCAGAAGACTACCTCAGTGTGGATCCCTTGGTTCAAGTCATCTCCAACTGGAGAAAAAGATAAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1295

Protein Analysis

324

Amino Acids

38.44

Weight (kDa)

9.08

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 66 - 305 3.2e-63 Protein of unknown function (DUF1295)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 228
AccII CGCG 1 cut(s) 718
AciI CCGC 2 cut(s) 316, 382
AclWI GGATC 3 cut(s) 526, 919, 932
AcuI CTGAAG 1 cut(s) 887
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 199, 228, 804, 921
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 181, 556, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 3 cut(s) 44, 435, 971
AluI AGCT 3 cut(s) 44, 435, 971
Alw21I GWGCWC 1 cut(s) 437
AlwI GGATC 3 cut(s) 526, 919, 932
AspA2I CCTAGG 1 cut(s) 781
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 2 cut(s) 134, 281
AvaII GGWCC 1 cut(s) 795
AvrII CCTAGG 1 cut(s) 781
AxyI CCTNAGG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 437
BccI CCATC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 460
BfaI CTAG 2 cut(s) 41, 782
BfuAI ACCTGC 1 cut(s) 484
BlnI CCTAGG 1 cut(s) 781
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 3 cut(s) 403, 779, 926
BpiI GAAGAC 1 cut(s) 914
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 3 cut(s) 205, 436, 972
Bsa29I ATCGAT 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 781, 929
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 228, 804, 921
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 5 cut(s) 96, 314, 419, 765, 955
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 401
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 781, 929
BseGI GGATG 2 cut(s) 237, 721
BseLI CCNNNNNNNGG 4 cut(s) 199, 228, 804, 921
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 3 cut(s) 99, 503, 930
BseNI ACTGG 5 cut(s) 96, 314, 419, 765, 955
Bsh1236I CGCG 1 cut(s) 718
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 437
BsiSI CCGG 2 cut(s) 283, 677
BslFI GGGAC 2 cut(s) 578, 771
BslI CCNNNNNNNGG 4 cut(s) 199, 228, 804, 921
BsmFI GGGAC 2 cut(s) 578, 771
BsmI GAATGC 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 3 cut(s) 234, 531, 924
Bsp68I TCGCGA 1 cut(s) 718
BspACI CCGC 2 cut(s) 316, 382
BspCNI CTCAG 3 cut(s) 100, 502, 929
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 718
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 3 cut(s) 403, 779, 926
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 3 cut(s) 526, 919, 932
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 5 cut(s) 96, 314, 419, 765, 955
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 2 cut(s) 781, 929
BssMI GATC 3 cut(s) 234, 531, 924
BssT1I CCWWGG 2 cut(s) 781, 929
Bst4CI ACNGT 3 cut(s) 253, 441, 453
Bst6I CTCTTC 4 cut(s) 68, 156, 176, 200
BstAPI GCANNNNNTGC 2 cut(s) 32, 614
BstDEI CTNAG 3 cut(s) 108, 489, 916
BstF5I GGATG 2 cut(s) 237, 721
BstFNI CGCG 1 cut(s) 718
BstKTI GATC 3 cut(s) 237, 534, 927
BstMBI GATC 3 cut(s) 234, 531, 924
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 614, 682, 715
BstNSI RCATGY 1 cut(s) 562
BstUI CGCG 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 914
BstX2I RGATCY 1 cut(s) 924
BstYI RGATCY 1 cut(s) 924
Bsu15I ATCGAT 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 2 cut(s) 237, 721
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 33, 423, 458, 924
BtuMI TCGCGA 1 cut(s) 718
BveI ACCTGC 1 cut(s) 484
CciI TCATGA 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 853
Csp6I GTAC 1 cut(s) 442
CviAII CATG 4 cut(s) 132, 559, 632, 774
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 3 cut(s) 108, 489, 916
DpnI GATC 3 cut(s) 236, 533, 926
DpnII GATC 3 cut(s) 234, 531, 924
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 4 cut(s) 68, 156, 176, 200
EarI CTCTTC 4 cut(s) 68, 156, 176, 200
Ecl136II GAGCTC 1 cut(s) 435
Eco130I CCWWGG 2 cut(s) 781, 929
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 781, 929
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 2 cut(s) 781, 929
FaeI CATG 4 cut(s) 135, 562, 635, 777
FaqI GGGAC 2 cut(s) 578, 771
FatI CATG 4 cut(s) 131, 558, 631, 773
FauI CCCGC 1 cut(s) 375
FokI GGATG 2 cut(s) 244, 708
FriOI GRGCYC 1 cut(s) 437
FspBI CTAG 2 cut(s) 41, 782
GsuI CTGGAG 3 cut(s) 205, 436, 972
HapII CCGG 2 cut(s) 283, 677
HgaI GACGC 1 cut(s) 853
Hin1II CATG 4 cut(s) 135, 562, 635, 777
HincII GTYRAC 3 cut(s) 187, 321, 339
HindII GTYRAC 3 cut(s) 187, 321, 339
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 2 cut(s) 286, 643
HpaII CCGG 2 cut(s) 283, 677
HphI GGTGA 2 cut(s) 134, 281
Hpy166II GTNNAC 5 cut(s) 187, 321, 339, 423, 795
Hpy188I TCNGA 3 cut(s) 504, 881, 906
Hpy188III TCNNGA 4 cut(s) 19, 632, 692, 717
Hpy8I GTNNAC 5 cut(s) 187, 321, 339, 423, 795
Hpy99I CGWCG 1 cut(s) 847
HpyAV CCTTC 2 cut(s) 59, 527
HpyCH4III ACNGT 3 cut(s) 253, 441, 453
HpyCH4IV ACGT 3 cut(s) 15, 183, 189
HpyCH4V TGCA 4 cut(s) 35, 588, 608, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 614, 682, 715
HpyF3I CTNAG 3 cut(s) 108, 489, 916
HpySE526I ACGT 3 cut(s) 15, 183, 189
Hsp92II CATG 4 cut(s) 135, 562, 635, 777
Kzo9I GATC 3 cut(s) 234, 531, 924
LmnI GCTCC 3 cut(s) 49, 351, 401
MaeI CTAG 2 cut(s) 41, 782
MaeII ACGT 3 cut(s) 15, 183, 189
MaeIII GTNAC 1 cut(s) 838
MalI GATC 3 cut(s) 236, 533, 926
MboI GATC 3 cut(s) 234, 531, 924
MboII GAAGA 7 cut(s) 55, 143, 163, 166, 169, 187, 919
MflI RGATCY 1 cut(s) 924
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 1 cut(s) 388
MlyI GAGTC 2 cut(s) 280, 652
MmeI TCCRAC 1 cut(s) 971
MseI TTAA 3 cut(s) 306, 543, 660
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 2 cut(s) 283, 677
Mva1269I GAATGC 1 cut(s) 867
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 614, 682, 715
NdeII GATC 3 cut(s) 234, 531, 924
NlaIII CATG 4 cut(s) 135, 562, 635, 777
NlaIV GGNNCC 3 cut(s) 403, 779, 926
NmuCI GTSAC 1 cut(s) 838
NruI TCGCGA 1 cut(s) 718
NspI RCATGY 1 cut(s) 562
PagI TCATGA 1 cut(s) 631
PciI ACATGT 1 cut(s) 558
PctI GAATGC 1 cut(s) 867
PflMI CCANNNNNTGG 1 cut(s) 228
PleI GAGTC 2 cut(s) 280, 651
PpsI GAGTC 2 cut(s) 280, 651
PscI ACATGT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 403, 779, 926
PspPI GGNCC 1 cut(s) 795
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
PsuI RGATCY 1 cut(s) 924
RruI TCGCGA 1 cut(s) 718
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 306, 543, 660
Sau3AI GATC 3 cut(s) 234, 531, 924
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 2 cut(s) 280, 652
SduI GDGCHC 1 cut(s) 437
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 1 cut(s) 388
SsiI CCGC 2 cut(s) 316, 382
SspMI CTAG 2 cut(s) 41, 782
SstI GAGCTC 1 cut(s) 437
StyI CCWWGG 2 cut(s) 781, 929
TaaI ACNGT 3 cut(s) 253, 441, 453
TaiI ACGT 3 cut(s) 18, 186, 192
TaqI TCGA 2 cut(s) 237, 646
TasI AATT 1 cut(s) 388
Tru1I TTAA 3 cut(s) 306, 543, 660
Tru9I TTAA 3 cut(s) 306, 543, 660
TscAI CASTG 4 cut(s) 33, 430, 458, 924
TseFI GTSAC 1 cut(s) 838
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 263, 620
TspRI CASTG 4 cut(s) 33, 430, 458, 924
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 795
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XmaJI CCTAGG 1 cut(s) 781
XspI CTAG 2 cut(s) 41, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.