Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006054

Physical Location & Seq

Genomic Coordinates Reverse (-)

39948908 .. 39950103

Gene Structure 1196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTACTTGCAAGTTACAACCATGGCTAGTAGTAACTTGAAGCATGCAGTAATAGCATTTCTAGCTCCCATTCCCTCCATTCTCTTCTACATTTCATTTCTCAACAACCAAAGTCACCAAACCAGTAGTACTGGGAGTCTGTCTCCCCTTTGGGAATGGTGCTATCACCACCCTTTTCTATCAGCCAATGCCCTCTTCTTCCTCAATGTCAATGTCCTCTTCTGGGTCATCAGCCAAGTCTTATCTAATCACTGGATGATCTCTTTGTATTGGACAGTGATACCAGTAATGCTAGTTCACTACTATAGGGCTCACCCTCTGGCTGATTATGATTGGTGGCGCTCCATTATTGCAATTTTGTTGACTTGGGTTTGGAGCCTCAGGATGGTTCACAACTATTTTAGGCGGGAAAATTGGCAGTGGAGTGCCAGGGAGGATTGGCGATTCACCAATATGACCTCACAATACGGCAAGCACTGGTGGTGGGCTTCCTTCTTCGCCATCTATCTCTCTCAGCAGGTTTTTCTAATTGGACTATGCCTTCCGATGTATGTAATCCACTCAGTTAATGTGCCACTGAACATTTGGGATTTTGCTGCCATCATGATCTGCATTTCTGGCATTGCTATAGCATACTATGCTGACACACAACTCTATAACTTTGCAAGTAAGAACAAGAAGCTAAAAGCGCTCGGAGAGCCAGTTGTGGTGACTCTTGATGAGGGGTTGTGGCGTTATTCACGACATCCGAACTACTTTGGAGAGCAATTATGGTGGTGGGGACTCGCTATATTTGCATGGAACCTCGGACATGGTTGGACCTTCATCGGCTCTTTCCTCAATACAATGTGTTTAGCTTATGTGACAAAGCTTGTGGAACAGCGAATGTTAGAACAGGACTACAGAGCAGAAGCATACAGGCAGTATCAGAAGACAACCTCAGTTTGGATACCTTGGCTCAAGGCATCCCCAATTGGAGGAAAAGATAAGAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

332

Amino Acids

39.32

Weight (kDa)

9.12

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	74 - 313	8.1e-60	Protein of unknown function (DUF1295)
PEMT	PF04191	238 - 303	2e-06	Phospholipid methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46890
fragaria_vesca	FvH4_7g18190 FvH4_7g18190 FvH4_7g18190
malus_domestica	MD07G1165100.v1.1
prunus_persica	Prupe.2G203800_v2.0.a1
pyrus_communis	pycom07g16020
rosa_chinensis	RchiOBHm_Chr1g0361831 RchiOBHm_Chr1g0361841
rosa_laevigata	RLG00000027699 RLG00000027700
rosa_multiflora	Rmu_ssc0000124.1_g000016 Rmu_ssc0000124.1_g000017 Rmu_ssc0000124.1_g000018
rosa_roxburghii	Rroxscaffold_4G00294660 Rroxscaffold_4G00294670
rosa_rugosa	Rorug01G0291500 Rorug01G0291600
rosa_samantha	Rh1AG302200 Rh1AG302400 Rh1BG265100 Rh1BG265200 Rh1CG283600 Rh1DG295100 Rh1DG295200
rosa_wichuraiana	Rw1G026780 Rw1G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AciI	CCGC	1 cut(s)	406
AfaI	GTAC	2 cut(s)	5, 130
AfeI	AGCGCT	1 cut(s)	690
AfiI	CCNNNNNNNGG	4 cut(s)	223, 385, 945, 977
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	4 cut(s)	65, 682, 857, 871
AluI	AGCT	4 cut(s)	65, 682, 857, 871
Alw26I	GTCTC	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	690
ApeKI	GCWGC	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	342, 691
AspS9I	GGNCC	1 cut(s)	819
AsuHPI	GGTGA	5 cut(s)	107, 158, 305, 439, 721
AvaII	GGWCC	1 cut(s)	819
AxyI	CCTNAGG	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	938
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	3 cut(s)	379, 509, 608
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	430
BciVI	GTATCC	1 cut(s)	942
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	3 cut(s)	27, 62, 293
BfmI	CTRYAG	3 cut(s)	304, 627, 901
BfoI	RGCGCY	2 cut(s)	343, 692
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	942
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	819
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	2 cut(s)	377, 803
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	974
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpuEI	CTTGAG	1 cut(s)	944
BsaJI	CCNNGG	4 cut(s)	21, 429, 805, 953
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 385, 945, 977
Bse1I	ACTGG	6 cut(s)	123, 136, 257, 284, 482, 701
Bse21I	CCTNAGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	4 cut(s)	21, 429, 805, 953
BseGI	GGATG	4 cut(s)	261, 390, 745, 965
BseLI	CCNNNNNNNGG	4 cut(s)	223, 385, 945, 977
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	4 cut(s)	394, 527, 576, 954
BseNI	ACTGG	6 cut(s)	123, 136, 257, 284, 482, 701
BseXI	GCAGC	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	4 cut(s)	223, 385, 945, 977
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	795
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	258, 606
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	406
BspCNI	CTCAG	4 cut(s)	393, 526, 575, 953
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	377, 803
BspMI	ACCTGC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	6 cut(s)	123, 136, 257, 284, 482, 701
BssECI	CCNNGG	4 cut(s)	21, 429, 805, 953
BssMI	GATC	2 cut(s)	258, 606
BssT1I	CCWWGG	2 cut(s)	21, 953
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	3 cut(s)	89, 200, 224
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	45, 473
BstDEI	CTNAG	5 cut(s)	380, 513, 562, 940, 996
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	261, 390, 745, 965
BstH2I	RGCGCY	2 cut(s)	343, 692
BstHHI	GCGC	2 cut(s)	342, 691
BstKTI	GATC	2 cut(s)	261, 609
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	258, 606
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 62, 618, 638, 688, 697, 794
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	3 cut(s)	304, 627, 901
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	938
Bsu36I	CCTNAGG	1 cut(s)	380
BsuI	GTATCC	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	4 cut(s)	261, 390, 745, 965
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	5 cut(s)	250, 282, 425, 475, 575
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	45, 473
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	2 cut(s)	342, 691
Cfr13I	GGNCC	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	4, 129
CspCI	CAANNNNNGTGG	4 cut(s)	755, 790, 855, 890
CviAII	CATG	5 cut(s)	22, 44, 604, 798, 812
CviQI	GTAC	2 cut(s)	4, 129
DdeI	CTNAG	5 cut(s)	380, 513, 562, 940, 996
DpnI	GATC	2 cut(s)	260, 608
DpnII	GATC	2 cut(s)	258, 606
Eam1104I	CTCTTC	3 cut(s)	89, 200, 224
EarI	CTCTTC	3 cut(s)	89, 200, 224
Eco130I	CCWWGG	2 cut(s)	21, 953
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	819
Eco47III	AGCGCT	1 cut(s)	690
Eco81I	CCTNAGG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	21, 953
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	21, 953
FaeI	CATG	5 cut(s)	25, 47, 607, 801, 815
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	5 cut(s)	21, 43, 603, 797, 811
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	4 cut(s)	268, 397, 732, 952
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	3 cut(s)	27, 62, 293
GlaI	GCGC	2 cut(s)	341, 690
GluI	GCNGC	1 cut(s)	597
HaeII	RGCGCY	2 cut(s)	343, 692
HhaI	GCGC	2 cut(s)	342, 691
Hin1II	CATG	5 cut(s)	25, 47, 607, 801, 815
Hin6I	GCGC	2 cut(s)	340, 689
HinP1I	GCGC	2 cut(s)	340, 689
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	4 cut(s)	136, 444, 712, 783
HphI	GGTGA	5 cut(s)	107, 158, 305, 439, 721
Hpy166II	GTNNAC	3 cut(s)	298, 363, 391
Hpy188I	TCNGA	5 cut(s)	546, 695, 750, 809, 930
Hpy188III	TCNNGA	4 cut(s)	382, 604, 716, 741
Hpy8I	GTNNAC	3 cut(s)	298, 363, 391
HpyAV	CCTTC	3 cut(s)	502, 551, 832
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	6 cut(s)	10, 47, 353, 612, 665, 797
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 62, 618, 638, 688, 697, 794
HpyF3I	CTNAG	5 cut(s)	380, 513, 562, 940, 996
Hsp92II	CATG	5 cut(s)	25, 47, 607, 801, 815
HspAI	GCGC	2 cut(s)	340, 689
Kzo9I	GATC	2 cut(s)	258, 606
LmnI	GCTCC	3 cut(s)	70, 347, 375
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	974
MaeI	CTAG	3 cut(s)	27, 62, 293
MaeIII	GTNAC	5 cut(s)	13, 32, 113, 709, 862
MalI	GATC	2 cut(s)	260, 608
MboI	GATC	2 cut(s)	258, 606
MboII	GAAGA	6 cut(s)	76, 187, 190, 211, 487, 943
MfeI	CAATTG	1 cut(s)	972
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	5 cut(s)	354, 412, 528, 767, 972
MlyI	GAGTC	3 cut(s)	145, 706, 777
MmeI	TCCRAC	1 cut(s)	797
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	972
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	7 cut(s)	53, 62, 618, 638, 688, 697, 794
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	258, 606
NlaIII	CATG	5 cut(s)	25, 47, 607, 801, 815
NlaIV	GGNNCC	2 cut(s)	377, 803
NmuCI	GTSAC	3 cut(s)	113, 709, 862
NspI	RCATGY	1 cut(s)	47
PaeI	GCATGC	1 cut(s)	47
PagI	TCATGA	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	3 cut(s)	144, 706, 777
PpsI	GAGTC	3 cut(s)	144, 706, 777
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	377, 803
PspPI	GGNCC	1 cut(s)	819
PsrI	GAACNNNNNNTAC	2 cut(s)	279, 311
RsaI	GTAC	2 cut(s)	5, 130
RsaNI	GTAC	2 cut(s)	4, 129
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	2 cut(s)	258, 606
Sau96I	GGNCC	1 cut(s)	819
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	3 cut(s)	145, 706, 777
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	1 cut(s)	974
SfcI	CTRYAG	3 cut(s)	304, 627, 901
SinI	GGWCC	1 cut(s)	819
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	5 cut(s)	354, 412, 528, 767, 972
SsiI	CCGC	1 cut(s)	406
SspMI	CTAG	3 cut(s)	27, 62, 293
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	2 cut(s)	21, 953
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	5 cut(s)	354, 412, 528, 767, 972
TatI	WGTACW	2 cut(s)	3, 128
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	5 cut(s)	257, 282, 425, 482, 582
TseFI	GTSAC	3 cut(s)	113, 709, 862
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	3 cut(s)	113, 709, 862
TspDTI	ATGAA	2 cut(s)	84, 814
TspRI	CASTG	5 cut(s)	257, 282, 425, 482, 582
VpaK11BI	GGWCC	1 cut(s)	819
XceI	RCATGY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	582
XspI	CTAG	3 cut(s)	27, 62, 293
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.