FvH4_7g18190

Protein of unknown function (DUF1295)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
15252695 .. 15257950
5256 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18190.t2

Sequence Viewer

Length: 993 bp
ATGTACTTGCAAGTTACAACCATGGCTAATAGTAAGCATGCAGTAATAGCATTTCTAGTTCCCATGCCCTCCATTCTCTTTTACCTTTCATTTCTCAAAAACCAGAGTCACCAAACCAGTAGTACTGGGAGTCTGTCTCCTCTTTGGGCATGGTGCTATCACCACCCTCTTCTATTAGCCAATGCCCTCTTCTTTCTCAATGTCAATGTCCTCTTCTGGGTCATCAGCCAAGTTCTATCTAATCACTGGATGATCTCTTTGTATTGGACAGTGATACCAGTAATGCTAGTTCACTACTACAAGGCTCACCCTCTGGCTGAATATAATTGGTTGCGCTCCATTATTGCAATTTTGATGACTTGGCTTTGGAGCCTCAGGATTGTTCACAACTATTTTAGGCGGGAAAATTGGCAGTGGAGTGCCAGGGAGGATTGGCGATTCACCAATATGACCTCACAATATGGCAAGCACTGGTGGTGGGCTTCCTTCTTTGCCATTTACCTCTCTCAGCAGGTTTTTCTAATTGGACTGTGCCTTCCGATGTATGTAATCCACTCAGTTAATGTTCCGCTGAACATCTGGGATATTGTTGCCATCATGGTCTCCGTTTCTGGCGTTGCTATAGCATACTTTGCTGACACACAATTGTATAAATTTACAAGTAAAAACAACAAGCTAAAGGAACTCGGAGAGCCAGTCGTACTTATTCTTGATAGAGGACTGTGGCGTTATTCACGCCATCCCAATTACTTTGGAGAGCAATTGTGGTGGTGGGGACTCGCTATATTTGCATGGAACCTCGGACATGGATGGACCTCTGTAGGGGCTTTCCTCAATACAATTTGTTTAGCTTATGTGACAAAGCTCGTGGAACAACGAATGCTAAAACAGGACTACAGAGCAGAAGCATACAGGCAGTATCAGAAGACAACCTCAGTTTGGATACCTTGGTTCAAGTCATCCCCAATTGAAGGAAAAGATAAGAAACCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

331

Amino Acids

39.11

Weight (kDa)

9.53

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 66 - 305 9.5e-63 Protein of unknown function (DUF1295)
PEMT PF04191 191 - 293 6.7e-06 Phospholipid methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AciI CCGC 2 cut(s) 400, 569
AcsI RAATTY 1 cut(s) 653
AfaI GTAC 3 cut(s) 5, 124, 702
AfiI CCNNNNNNNGG 4 cut(s) 217, 822, 939, 971
AgsI TTSAA 2 cut(s) 955, 971
AjnI CCWGG 1 cut(s) 422
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 676, 851, 865
AluI AGCT 3 cut(s) 676, 851, 865
Alw26I GTCTC 2 cut(s) 141, 607
ApoI RAATTY 1 cut(s) 653
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 813
AsuHPI GGTGA 4 cut(s) 101, 152, 299, 433
AvaII GGWCC 1 cut(s) 813
AxyI CCTNAGG 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 935, 968
BauI CACGAG 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 932
BccI CCATC 3 cut(s) 602, 747, 804
BciT130I CCWGG 1 cut(s) 424
BciVI GTATCC 1 cut(s) 936
BcoDI GTCTC 2 cut(s) 141, 607
BfaI CTAG 2 cut(s) 56, 287
BfmI CTRYAG 3 cut(s) 621, 819, 895
BfuAI ACCTGC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 936
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 424
Bme18I GGWCC 1 cut(s) 813
BmgT120I GGNCC 1 cut(s) 813
BmiI GGNNCC 2 cut(s) 371, 797
BmrFI CCNGG 1 cut(s) 424
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 932
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 21, 423, 799, 947
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 822, 939, 971
Bse1I ACTGG 6 cut(s) 117, 130, 251, 278, 476, 695
Bse21I CCTNAGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 4 cut(s) 21, 423, 799, 947
BseGI GGATG 4 cut(s) 255, 739, 815, 959
BseLI CCNNNNNNNGG 4 cut(s) 217, 822, 939, 971
BseMII CTCAG 4 cut(s) 388, 521, 570, 948
BseNI ACTGG 6 cut(s) 117, 130, 251, 278, 476, 695
BseRI GAGGAG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 4 cut(s) 217, 822, 939, 971
BsmAI GTCTC 2 cut(s) 141, 607
BsmFI GGGAC 1 cut(s) 789
BsmI GAATGC 1 cut(s) 885
Bso31I GGTCTC 1 cut(s) 607
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 400, 569
BspCNI CTCAG 4 cut(s) 387, 520, 569, 947
BspLI GGNNCC 2 cut(s) 371, 797
BspMI ACCTGC 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 607
BsrI ACTGG 6 cut(s) 117, 130, 251, 278, 476, 695
BssECI CCNNGG 4 cut(s) 21, 423, 799, 947
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 866
BssT1I CCWWGG 2 cut(s) 21, 947
Bst2BI CACGAG 1 cut(s) 866
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 3 cut(s) 271, 531, 723
Bst6I CTCTTC 3 cut(s) 174, 194, 218
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 39, 467
BstDEI CTNAG 5 cut(s) 374, 507, 556, 934, 990
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 4 cut(s) 255, 739, 815, 959
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 141, 607
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 47, 632, 788
BstNI CCWGG 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 3 cut(s) 621, 819, 895
BstV2I GAAGAC 1 cut(s) 932
Bsu36I CCTNAGG 1 cut(s) 374
BsuI GTATCC 1 cut(s) 936
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 4 cut(s) 255, 739, 815, 959
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 4 cut(s) 244, 276, 419, 469
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 39, 467
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 813
Csp6I GTAC 3 cut(s) 4, 123, 701
CspCI CAANNNNNGTGG 4 cut(s) 749, 784, 849, 884
CviAII CATG 7 cut(s) 22, 38, 64, 150, 598, 792, 806
CviQI GTAC 3 cut(s) 4, 123, 701
DdeI CTNAG 5 cut(s) 374, 507, 556, 934, 990
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 174, 194, 218
EarI CTCTTC 3 cut(s) 174, 194, 218
Eco130I CCWWGG 2 cut(s) 21, 947
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 813
Eco81I CCTNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 21, 947
ErhI CCWWGG 2 cut(s) 21, 947
FaeI CATG 7 cut(s) 25, 41, 67, 153, 601, 795, 809
FaqI GGGAC 1 cut(s) 789
FatI CATG 7 cut(s) 21, 37, 63, 149, 597, 791, 805
FauI CCCGC 1 cut(s) 393
FokI GGATG 4 cut(s) 262, 726, 822, 946
FspBI CTAG 2 cut(s) 56, 287
GlaI GCGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 336
Hin1II CATG 7 cut(s) 25, 41, 67, 153, 601, 795, 809
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 4 cut(s) 106, 130, 438, 777
HphI GGTGA 4 cut(s) 101, 152, 299, 433
Hpy166II GTNNAC 2 cut(s) 292, 385
Hpy188I TCNGA 4 cut(s) 540, 689, 803, 924
Hpy188III TCNNGA 2 cut(s) 376, 710
Hpy8I GTNNAC 2 cut(s) 292, 385
HpyAV CCTTC 3 cut(s) 496, 545, 965
HpyCH4III ACNGT 3 cut(s) 271, 531, 723
HpyCH4V TGCA 4 cut(s) 10, 41, 347, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 632, 788
HpyF3I CTNAG 5 cut(s) 374, 507, 556, 934, 990
Hsp92II CATG 7 cut(s) 25, 41, 67, 153, 601, 795, 809
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 341, 369
MaeI CTAG 2 cut(s) 56, 287
MaeIII GTNAC 3 cut(s) 13, 107, 856
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 4 cut(s) 161, 181, 205, 937
MfeI CAATTG 3 cut(s) 644, 761, 966
MlyI GAGTC 3 cut(s) 115, 139, 771
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 571
MspR9I CCNGG 1 cut(s) 424
MunI CAATTG 3 cut(s) 644, 761, 966
Mva1269I GAATGC 1 cut(s) 885
MvaI CCWGG 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 47, 632, 788
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 252
NlaIII CATG 7 cut(s) 25, 41, 67, 153, 601, 795, 809
NlaIV GGNNCC 2 cut(s) 371, 797
NmuCI GTSAC 2 cut(s) 107, 856
NspI RCATGY 1 cut(s) 41
PaeI GCATGC 1 cut(s) 41
PctI GAATGC 1 cut(s) 885
PfeI GAWTC 1 cut(s) 438
PleI GAGTC 3 cut(s) 114, 138, 771
PpsI GAGTC 3 cut(s) 114, 138, 771
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 371, 797
PspPI GGNCC 1 cut(s) 813
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
RsaI GTAC 3 cut(s) 5, 124, 702
RsaNI GTAC 3 cut(s) 4, 123, 701
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 1 cut(s) 561
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 813
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 3 cut(s) 115, 139, 771
ScrFI CCNGG 1 cut(s) 424
SfcI CTRYAG 3 cut(s) 621, 819, 895
SinI GGWCC 1 cut(s) 813
SmiMI CAYNNNNRTG 1 cut(s) 446
SphI GCATGC 1 cut(s) 41
SsiI CCGC 2 cut(s) 400, 569
SspMI CTAG 2 cut(s) 56, 287
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 2 cut(s) 21, 947
TaaI ACNGT 3 cut(s) 271, 531, 723
TatI WGTACW 2 cut(s) 3, 122
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 4 cut(s) 251, 276, 419, 476
TseFI GTSAC 2 cut(s) 107, 856
Tsp45I GTSAC 2 cut(s) 107, 856
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 4 cut(s) 251, 276, 419, 476
VpaK11BI GGWCC 1 cut(s) 813
XapI RAATTY 1 cut(s) 653
XceI RCATGY 1 cut(s) 41
XspI CTAG 2 cut(s) 56, 287
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.