Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006054

Physical Location & Seq

Genomic Coordinates Reverse (-)

55483916 .. 55485094

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTCTAATAACGTCAAGAACGCAGTGGTTGCATTTCTAGCTCCCCTTCCCTCCATTCTCTTCTACCTCACATTCCTCCACAACCACCAAACCAGTAGTAGCCCTGAGGCTCTCTCTCCTATTTGGGCATGGTGTTATCACCACCCTCTTCTTCTAGCCAATGCCTTCTTCTTCTTCAACGTCAATGTCCTCTTTTGGGTCATCAGCCAAGTCCTCTCCAGCCATTGGATGATCGATTTGTATTGGACTGTGATACCTGTAATGCTGGTTCATTACTACCGGACTCACCCTCTGGCTGATTTGAACTGGTGGCGGTCAACGATTGGAGTGGTGTTGACTTGGGTTTGGAGCGTAAGGCTGACCCATAACTATTTTAGGCGGGAAAATTGGCAATGGGGAGCCAGAGAGGACTGGAGGTTCACCGATATGAACTCACAGTACGGCAAACAGTGGTGGTGGATTTCTTTCTTTGCTGTTTATCTTTCTCAGCAGGTTTTTCTGATTGGAATATGCCTTCCTTTGTATGTGATCCACTCGGTTAATGTGCCATTGAACATGTGGGATTTTGTTGCCATCATTGTCTGCATTTCTGGTATTGTTGTTGCATACTTTGCCGATACGCAGCTCCATGAGTTTGTGAGTAGAAACAATGAGTTTAAACAGCTTGGGAAGCCGATTGTGCCCAATCTTGATGAGGGGTTGTGGCGTTATTCGCGACATCCCAACTATTTTGGAGAGCAGTTGTGGTGGTGGGGACTGGTTGTGTTTGCATGGAACCTGGGACAGGGATGGACCTTTGTCGGCTCTTTTGTCAATACAATGTGTTTGGCTTATGTGACGACGCTTGTGGAGAAGCGAATGCTGAAGCAAGATTTCAGAGCAGAAGCATACAGGCAGTATCAGAAGACTACCTCAGTGTGGATCCCTTGGTTCAAGTCATCTGCAACTGGAGAAAAAGATAAGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016229 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1295

Protein Analysis

324

Amino Acids

38.45

Weight (kDa)

8.95

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1295	PF06966	66 - 305	3.6e-64	Protein of unknown function (DUF1295)
PEMT	PF04191	191 - 294	6.1e-06	Phospholipid methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46890
fragaria_vesca	FvH4_7g18190 FvH4_7g18190 FvH4_7g18190
malus_domestica	MD07G1165100.v1.1
prunus_persica	Prupe.2G203800_v2.0.a1
pyrus_communis	pycom07g16020
rosa_chinensis	RchiOBHm_Chr1g0361831 RchiOBHm_Chr1g0361841
rosa_laevigata	RLG00000027699 RLG00000027700
rosa_multiflora	Rmu_ssc0000124.1_g000016 Rmu_ssc0000124.1_g000017 Rmu_ssc0000124.1_g000018
rosa_roxburghii	Rroxscaffold_4G00294660 Rroxscaffold_4G00294670
rosa_rugosa	Rorug01G0291500 Rorug01G0291600
rosa_samantha	Rh1AG302200 Rh1AG302400 Rh1BG265100 Rh1BG265200 Rh1CG283600 Rh1DG295100 Rh1DG295200
rosa_wichuraiana	Rw1G026780 Rw1G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccII	CGCG	1 cut(s)	718
AciI	CCGC	2 cut(s)	316, 382
AclWI	GGATC	3 cut(s)	526, 919, 932
AcuI	CTGAAG	1 cut(s)	887
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	4 cut(s)	199, 228, 787, 921
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	4 cut(s)	181, 307, 556, 937
AjnI	CCWGG	1 cut(s)	780
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	4 cut(s)	44, 628, 667, 971
AluI	AGCT	4 cut(s)	44, 628, 667, 971
AlwI	GGATC	3 cut(s)	526, 919, 932
ApeKI	GCWGC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	795
AsuHPI	GGTGA	3 cut(s)	134, 281, 415
AvaII	GGWCC	1 cut(s)	795
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	924
BbsI	GAAGAC	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	2 cut(s)	584, 786
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	782
BfaI	CTAG	2 cut(s)	41, 158
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	1 cut(s)	795
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	3 cut(s)	403, 779, 926
BmrFI	CCNGG	1 cut(s)	782
BoxI	GACNNNNGTC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	3 cut(s)	205, 436, 972
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	781, 929
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 228, 787, 921
Bse1I	ACTGG	5 cut(s)	96, 314, 419, 765, 955
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	782
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	781, 929
BseGI	GGATG	3 cut(s)	237, 721, 797
BseLI	CCNNNNNNNGG	4 cut(s)	199, 228, 787, 921
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	3 cut(s)	99, 503, 930
BseNI	ACTGG	5 cut(s)	96, 314, 419, 765, 955
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	718
BshVI	ATCGAT	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	771, 798
BslI	CCNNNNNNNGG	4 cut(s)	199, 228, 787, 921
BsmFI	GGGAC	2 cut(s)	771, 798
BsmI	GAATGC	1 cut(s)	867
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	234, 531, 924
Bsp68I	TCGCGA	1 cut(s)	718
BspACI	CCGC	2 cut(s)	316, 382
BspCNI	CTCAG	3 cut(s)	100, 502, 929
BspDI	ATCGAT	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	718
BspLI	GGNNCC	3 cut(s)	403, 779, 926
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	3 cut(s)	526, 919, 932
BsrDI	GCAATG	1 cut(s)	401
BsrI	ACTGG	5 cut(s)	96, 314, 419, 765, 955
BssECI	CCNNGG	2 cut(s)	781, 929
BssMI	GATC	3 cut(s)	234, 531, 924
BssT1I	CCWWGG	1 cut(s)	929
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	3 cut(s)	253, 441, 453
Bst6I	CTCTTC	2 cut(s)	68, 156
BstAPI	GCANNNNNTGC	2 cut(s)	32, 614
BstDEI	CTNAG	3 cut(s)	108, 489, 916
BstENI	CCTNNNNNAGG	1 cut(s)	785
BstF5I	GGATG	3 cut(s)	237, 721, 797
BstFNI	CGCG	1 cut(s)	718
BstKTI	GATC	3 cut(s)	237, 534, 927
BstMBI	GATC	3 cut(s)	234, 531, 924
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 41, 614, 673, 682, 715
BstNI	CCWGG	1 cut(s)	782
BstNSI	RCATGY	1 cut(s)	562
BstPAI	GACNNNNGTC	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	780
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	1 cut(s)	718
BstV1I	GCAGC	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	924
BstYI	RGATCY	1 cut(s)	924
Bsu15I	ATCGAT	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	237, 721, 797
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 458, 924
BtuMI	TCGCGA	1 cut(s)	718
BveI	ACCTGC	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	4 cut(s)	132, 559, 632, 774
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	108, 489, 916
DpnI	GATC	3 cut(s)	236, 533, 926
DpnII	GATC	3 cut(s)	234, 531, 924
DraI	TTTAAA	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	68, 156
EarI	CTCTTC	2 cut(s)	68, 156
Eco130I	CCWWGG	1 cut(s)	929
Eco47I	GGWCC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	887
Eco81I	CCTNAGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	1 cut(s)	929
ErhI	CCWWGG	1 cut(s)	929
FaeI	CATG	4 cut(s)	135, 562, 635, 777
FaqI	GGGAC	2 cut(s)	771, 798
FatI	CATG	4 cut(s)	131, 558, 631, 773
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	3 cut(s)	244, 708, 804
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	2 cut(s)	41, 158
GluI	GCNGC	1 cut(s)	626
GsuI	CTGGAG	3 cut(s)	205, 436, 972
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	853
Hin1II	CATG	4 cut(s)	135, 562, 635, 777
HincII	GTYRAC	2 cut(s)	321, 339
HindII	GTYRAC	2 cut(s)	321, 339
HindIII	AAGCTT	1 cut(s)	969
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	3 cut(s)	134, 281, 415
Hpy166II	GTNNAC	3 cut(s)	321, 339, 423
Hpy188I	TCNGA	3 cut(s)	504, 881, 906
Hpy188III	TCNNGA	3 cut(s)	19, 692, 717
Hpy8I	GTNNAC	3 cut(s)	321, 339, 423
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	3 cut(s)	59, 178, 527
HpyCH4III	ACNGT	3 cut(s)	253, 441, 453
HpyCH4IV	ACGT	2 cut(s)	15, 183
HpyCH4V	TGCA	5 cut(s)	35, 588, 608, 773, 947
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 41, 614, 673, 682, 715
HpyF3I	CTNAG	3 cut(s)	108, 489, 916
HpySE526I	ACGT	2 cut(s)	15, 183
Hsp92II	CATG	4 cut(s)	135, 562, 635, 777
Kzo9I	GATC	3 cut(s)	234, 531, 924
LmnI	GCTCC	4 cut(s)	49, 351, 401, 633
Lsp1109I	GCAGC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	41, 158
MaeII	ACGT	2 cut(s)	15, 183
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	3 cut(s)	236, 533, 926
MboI	GATC	3 cut(s)	234, 531, 924
MboII	GAAGA	7 cut(s)	55, 143, 146, 163, 166, 169, 919
MflI	RGATCY	1 cut(s)	924
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	280
MseI	TTAA	2 cut(s)	543, 660
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	782
MssI	GTTTAAAC	1 cut(s)	661
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	1 cut(s)	718
MwoI	GCNNNNNNNGC	6 cut(s)	32, 41, 614, 673, 682, 715
NdeII	GATC	3 cut(s)	234, 531, 924
NlaIII	CATG	4 cut(s)	135, 562, 635, 777
NlaIV	GGNNCC	3 cut(s)	403, 779, 926
NmuCI	GTSAC	1 cut(s)	838
NruI	TCGCGA	1 cut(s)	718
NspI	RCATGY	1 cut(s)	562
PciI	ACATGT	1 cut(s)	558
PctI	GAATGC	1 cut(s)	867
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	1 cut(s)	280
PmeI	GTTTAAAC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	280
PscI	ACATGT	1 cut(s)	558
PshAI	GACNNNNGTC	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	780
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	3 cut(s)	403, 779, 926
PspPI	GGNCC	1 cut(s)	795
PsrI	GAACNNNNNNTAC	4 cut(s)	255, 287, 425, 457
PsuI	RGATCY	1 cut(s)	924
RruI	TCGCGA	1 cut(s)	718
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	543, 660
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	3 cut(s)	234, 531, 924
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	1 cut(s)	687
SinI	GGWCC	1 cut(s)	795
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	2 cut(s)	316, 382
SspMI	CTAG	2 cut(s)	41, 158
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	1 cut(s)	929
TaaI	ACNGT	3 cut(s)	253, 441, 453
TaiI	ACGT	2 cut(s)	18, 186
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	543, 660
Tru9I	TTAA	2 cut(s)	543, 660
TscAI	CASTG	3 cut(s)	33, 458, 924
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	1 cut(s)	625
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	2 cut(s)	263, 446
TspRI	CASTG	3 cut(s)	33, 458, 924
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	795
XagI	CCTNNNNNAGG	1 cut(s)	785
XceI	RCATGY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XspI	CTAG	2 cut(s)	41, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.