Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009967

Physical Location & Seq

Genomic Coordinates Forward (+)

19446730 .. 19447642

Gene Structure 913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACAACCATAGCTGCAGCTGGCCTCAACGTCGCGACTCCACGAGTGGTCGTTCGACCTGTGGCTCGTGTATTAGGTCCGGTCCGGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCTACATCGGAAGGAGAGATATCGGAGAAGGTGGAGAAGAGTATACAAGAAGCTAAGGAGACATGCGCTGATGATCCGGTGAGCGGGGAGTGTGTAGCGGCTTGGGACGAGGTGGAGGAGCTGAGTGCGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGTATTGCAATGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006109 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0010110 GO:0015977 GO:0015979 GO:0016043 GO:0016051 GO:0016151 GO:0018149 GO:0018193 GO:0018198 GO:0018316 GO:0019222 GO:0019253 GO:0019538 GO:0019685 GO:0019899 GO:0022607 GO:0030674 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032991 GO:0033554 GO:0034059 GO:0034285 GO:0034605 GO:0036211 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060090 GO:0065003 GO:0065007 GO:0070417 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0071704 GO:0071840 GO:0080090 GO:0080152 GO:0080153 GO:0099080 GO:1901564 GO:1901576 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

124

Amino Acids

13.49

Weight (kDa)

4.86

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	53 - 123	1.2e-26	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47400 AT3G62410
fragaria_vesca	FvH4_5g39190
malus_domestica	MD03G1295100.v1.1 MD11G1314000.v1.1 MD14G1018200.v1.1
prunus_persica	Prupe.8G267000_v2.0.a1
pyrus_communis	pycom03g23330 pycom11g27420
rosa_chinensis	RchiOBHm_Chr7g0241451
rosa_laevigata	RLG00000000580
rosa_multiflora	Rmu_co8291201.1_g000001 Rmu_sc0015905.1_g000005 Rmu_sc0039240.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219130
rosa_rugosa	Rorug07G0343900
rosa_samantha	Rh7AG498600 Rh7BG469200 Rh7CG515500 Rh7DG483300
rosa_wichuraiana	Rw7G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	121, 222, 236, 266, 269
AclWI	GGATC	2 cut(s)	206, 305
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	91
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	5 cut(s)	14, 20, 191, 259, 299
AluI	AGCT	5 cut(s)	14, 20, 191, 259, 299
Alw26I	GTCTC	2 cut(s)	191, 338
AlwI	GGATC	2 cut(s)	206, 305
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	14, 17
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	77, 82
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	77, 82
BauI	CACGAG	2 cut(s)	42, 66
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	191, 338
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	5 cut(s)	15, 18, 237, 267, 270
BlsI	GCNGC	5 cut(s)	16, 19, 238, 268, 271
Bme18I	GGWCC	2 cut(s)	77, 82
BmgT120I	GGNCC	2 cut(s)	77, 82
BmiI	GGNNCC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	3 cut(s)	79, 84, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	251, 333
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	24
BsiSI	CCGG	3 cut(s)	80, 85, 215
BslFI	GGGAC	2 cut(s)	257, 299
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	191, 338
BsmFI	GGGAC	2 cut(s)	257, 299
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	211, 310
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	5 cut(s)	121, 222, 236, 266, 269
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	252, 334
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	206, 305
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	211, 310
BssNAI	GTATAC	1 cut(s)	182
BssSI	CACGAG	2 cut(s)	42, 66
Bst1107I	GTATAC	1 cut(s)	182
Bst2BI	CACGAG	2 cut(s)	42, 66
Bst6I	CTCTTC	2 cut(s)	170, 315
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	192, 260, 342
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	214, 313
BstMAI	GTCTC	2 cut(s)	191, 338
BstMBI	GATC	2 cut(s)	211, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	29
BstZ17I	GTATAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	129
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	77, 82
CpoI	CGGWCCG	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	360
CspI	CGGWCCG	1 cut(s)	82
CviAII	CATG	2 cut(s)	201, 278
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	192, 260, 342
DpnI	GATC	2 cut(s)	213, 312
DpnII	GATC	2 cut(s)	211, 310
Eam1104I	CTCTTC	2 cut(s)	170, 315
EarI	CTCTTC	2 cut(s)	170, 315
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	77, 82
EcoRV	GATATC	1 cut(s)	159
FaeI	CATG	2 cut(s)	204, 281
FaiI	YATR	5 cut(s)	11, 182, 202, 279, 366
FaqI	GGGAC	2 cut(s)	257, 299
FatI	CATG	2 cut(s)	200, 277
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	15, 18, 237, 267, 270
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	5 cut(s)	15, 18, 237, 267, 270
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	5 cut(s)	15, 18, 237, 267, 270
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	3 cut(s)	80, 85, 215
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	204, 281
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	37, 274
HpaII	CCGG	3 cut(s)	80, 85, 215
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	3 cut(s)	148, 163, 310
Hpy188III	TCNNGA	2 cut(s)	34, 341
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	143, 160
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	17, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	192, 260, 342
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	204, 281
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	211, 310
LmnI	GCTCC	2 cut(s)	256, 311
LpnPI	CCDG	7 cut(s)	6, 72, 93, 98, 228, 285, 354
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	213, 312
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	2 cut(s)	211, 310
MboII	GAAGA	3 cut(s)	187, 304, 332
MluCI	AATT	3 cut(s)	91, 104, 370
MlyI	GAGTC	2 cut(s)	31, 283
MnlI	CCTC	3 cut(s)	35, 241, 247
MseI	TTAA	2 cut(s)	135, 373
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	80, 85, 215
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	211, 310
NlaIII	CATG	2 cut(s)	204, 281
NlaIV	GGNNCC	1 cut(s)	307
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	16, 19, 238, 268, 271
PleI	GAGTC	2 cut(s)	31, 282
PpsI	GAGTC	2 cut(s)	31, 282
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	2 cut(s)	77, 82
PstI	CTGCAG	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	20
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
Rsr2I	CGGWCCG	1 cut(s)	82
RsrII	CGGWCCG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	135, 373
SatI	GCNGC	5 cut(s)	15, 18, 237, 267, 270
Sau3AI	GATC	2 cut(s)	211, 310
Sau96I	GGNCC	2 cut(s)	77, 82
SchI	GAGTC	2 cut(s)	31, 283
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	77, 82
Sse9I	AATT	3 cut(s)	91, 104, 370
SsiI	CCGC	5 cut(s)	121, 222, 236, 266, 269
SspMI	CTAG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	55, 113
TasI	AATT	3 cut(s)	91, 104, 370
TauI	GCSGC	3 cut(s)	239, 269, 272
Tru1I	TTAA	2 cut(s)	135, 373
Tru9I	TTAA	2 cut(s)	135, 373
TseI	GCWGC	2 cut(s)	14, 17
TspDTI	ATGAA	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	77, 82
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.