Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009967

Physical Location & Seq

Genomic Coordinates Forward (+)

23090944 .. 23091580

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCAACTATAGCTACTGGTCTTAACATTGCAACCCAGCGTGTCTTCGTCACCAGCGAGAATCGGCCAGTTTGTCTCGCCGGTCCGGTCCATTTGAACAATTCGTGGAATCTTGGGTCAAGAACAACTAACCGGATGATGAAACTTCAGCCGATTAAAGCAGCACCGGAAGGAGGGATATCGGACGTAGTGGAGAAAAGCATTAAGGAAGCTCAGGAGACTTGTGCGGGCGATCCTGTGAGTGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGAACTTAGCGCAGCAGCTAGCCATGCTAGAGACAAGAAGAAGGCTGATGGTTCGGACCCTTTGGAGGAATACTGCAAAGACAATCCTGAGACCAACGAGTGCCGTACTTACGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006109 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0010110 GO:0015977 GO:0015979 GO:0016043 GO:0016051 GO:0016151 GO:0018149 GO:0018193 GO:0018198 GO:0018316 GO:0019222 GO:0019253 GO:0019538 GO:0019685 GO:0019899 GO:0022607 GO:0030674 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032991 GO:0033554 GO:0034059 GO:0034285 GO:0034605 GO:0036211 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060090 GO:0065003 GO:0065007 GO:0070417 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0071704 GO:0071840 GO:0080090 GO:0080152 GO:0080153 GO:0099080 GO:1901564 GO:1901576 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

131

Amino Acids

14.17

Weight (kDa)

4.82

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	60 - 130	7.8e-26	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0009967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47400 AT3G62410
fragaria_vesca	FvH4_5g39190
malus_domestica	MD03G1295100.v1.1 MD11G1314000.v1.1 MD14G1018200.v1.1
prunus_persica	Prupe.8G267000_v2.0.a1
pyrus_communis	pycom03g23330 pycom11g27420
rosa_chinensis	RchiOBHm_Chr7g0241451
rosa_laevigata	RLG00000000580
rosa_multiflora	Rmu_co8291201.1_g000001 Rmu_sc0015905.1_g000005 Rmu_sc0039240.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219130
rosa_rugosa	Rorug07G0343900
rosa_samantha	Rh7AG498600 Rh7BG469200 Rh7CG515500 Rh7DG483300
rosa_wichuraiana	Rw7G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	3 cut(s)	173, 242, 340
AgsI	TTSAA	2 cut(s)	97, 275
AluBI	AGCT	4 cut(s)	14, 212, 257, 293
AluI	AGCT	4 cut(s)	14, 212, 257, 293
Alw26I	GTCTC	4 cut(s)	80, 212, 300, 359
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	4 cut(s)	161, 257, 287, 290
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	83, 88, 331
AsuHPI	GGTGA	1 cut(s)	43
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	83, 88, 331
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	173, 244, 299, 302
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	363
BcoDI	GTCTC	4 cut(s)	80, 212, 300, 359
BfaI	CTAG	2 cut(s)	294, 303
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	162, 258, 288, 291
BlsI	GCNGC	4 cut(s)	163, 259, 289, 292
Bme18I	GGWCC	3 cut(s)	83, 88, 331
BmgT120I	GGNCC	3 cut(s)	83, 88, 331
BmiI	GGNNCC	1 cut(s)	333
BmtI	GCTAGC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	359
BsaWI	WCCGGW	3 cut(s)	85, 132, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 242, 340
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	22, 68
Bse3DI	GCAATG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	173, 242, 340
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	227, 354
BseNI	ACTGG	2 cut(s)	22, 68
BseXI	GCAGC	4 cut(s)	173, 244, 299, 302
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	67
BsiSI	CCGG	4 cut(s)	81, 86, 133, 167
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	173, 242, 340
BsmAI	GTCTC	4 cut(s)	80, 212, 300, 359
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	226, 355
BspLI	GGNNCC	1 cut(s)	333
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	22, 68
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	229, 295
BstDEI	CTNAG	3 cut(s)	213, 281, 363
BstF5I	GGATG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	4 cut(s)	80, 212, 300, 359
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 299
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	4 cut(s)	173, 244, 299, 302
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	229, 295
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	83, 88, 331
CpoI	CGGWCCG	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	381
CspI	CGGWCCG	1 cut(s)	83
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	8 cut(s)	14, 67, 151, 212, 257, 293, 297, 320
CviKI_1	RGCY	8 cut(s)	14, 67, 151, 212, 257, 293, 297, 320
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	3 cut(s)	213, 281, 363
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	359
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	3 cut(s)	83, 88, 331
Eco57I	CTGAAG	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	180
FaeI	CATG	1 cut(s)	302
FaiI	YATR	2 cut(s)	11, 300
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	298
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	162, 258, 288, 291
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	162, 258, 288, 291
FspBI	CTAG	2 cut(s)	294, 303
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	4 cut(s)	162, 258, 288, 291
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	4 cut(s)	81, 86, 133, 167
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	61, 109
HpaII	CCGG	4 cut(s)	81, 86, 133, 167
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	184, 331
Hpy188III	TCNNGA	3 cut(s)	120, 215, 362
HpyAV	CCTTC	2 cut(s)	164, 310
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	32, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 299
HpyF3I	CTNAG	3 cut(s)	213, 281, 363
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	232
Lsp1109I	GCAGC	4 cut(s)	173, 244, 299, 302
MaeI	CTAG	2 cut(s)	294, 303
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	37, 287, 325
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	3 cut(s)	167, 262, 334
MseI	TTAA	3 cut(s)	24, 156, 204
MspI	CCGG	4 cut(s)	81, 86, 133, 167
MwoI	GCNNNNNNNGC	2 cut(s)	11, 299
NdeII	GATC	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	61, 109
PkrI	GCNGC	4 cut(s)	163, 259, 289, 292
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	3 cut(s)	83, 88, 331
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	24, 156, 204
SatI	GCNGC	4 cut(s)	162, 258, 288, 291
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	83, 88, 331
SetI	ASST	6 cut(s)	16, 189, 214, 259, 273, 295
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	3 cut(s)	83, 88, 331
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	294, 303
TaiI	ACGT	1 cut(s)	189
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	61, 109
Tru1I	TTAA	3 cut(s)	24, 156, 204
Tru9I	TTAA	3 cut(s)	24, 156, 204
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	4 cut(s)	161, 257, 287, 290
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	155
VpaK11BI	GGWCC	3 cut(s)	83, 88, 331
XspI	CTAG	2 cut(s)	294, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.