Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009967

Physical Location & Seq

Genomic Coordinates Forward (+)

37110189 .. 37110626

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1295100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTCGTTATCACCTCACCACTTCGAAACCCGAAAGAAAGAGAAGGAGAAATGGCAACCACCACTACACTCGCCGGAGTGAGCCTCTCCACCCCAAGGGCAGTGTTGTCAAAAACAACAGAGGCACCGAGGGCATTTCAATCGCTCAACATCCCCACCTGGAGAAGCTACTCTTCCGTTGGCCGCCGCATGACCTTGGTAAGGCCAGTAACCGCAGCACCGGATAAACTGTCGGAAAAGGTAGCGGAAAGCATCAAGAGCGCCGAGGAGAAGTGCTCGGACGACCCGGCAAGCGGGGAGTGCGTGGCGGCGTGGGACGAGGTGGAGGAGCTGAGCGCTGCCGCCAGCCACAAACGTGCCAACGAGAAAAGTTCCGACCCCTTGGAGACATTCTGTAAGGACAACCCCGAAACCGACGAGTGCCGTACTTACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

146

Amino Acids

15.84

Weight (kDa)

5.06

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	77 - 145	5e-25	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47400 AT3G62410
fragaria_vesca	FvH4_5g39190
malus_domestica	MD03G1295100.v1.1 MD11G1314000.v1.1 MD14G1018200.v1.1
prunus_persica	Prupe.8G267000_v2.0.a1
pyrus_communis	pycom03g23330 pycom11g27420
rosa_chinensis	RchiOBHm_Chr7g0241451
rosa_laevigata	RLG00000000580
rosa_multiflora	Rmu_co8291201.1_g000001 Rmu_sc0015905.1_g000005 Rmu_sc0039240.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219130
rosa_rugosa	Rorug07G0343900
rosa_samantha	Rh7AG498600 Rh7BG469200 Rh7CG515500 Rh7DG483300
rosa_wichuraiana	Rw7G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	7 cut(s)	184, 187, 213, 245, 294, 308, 342
AcoI	YGGCCR	1 cut(s)	181
AfaI	GTAC	1 cut(s)	427
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	96, 201, 293
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	158
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	168, 331
AluI	AGCT	2 cut(s)	168, 331
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	380
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	2 cut(s)	181, 203
ApeKI	GCWGC	2 cut(s)	215, 338
AspLEI	GCGC	2 cut(s)	263, 338
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	4, 9
AsuII	TTCGAA	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	227, 325
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	380
BfoI	RGCGCY	2 cut(s)	264, 339
BisI	GCNGC	6 cut(s)	184, 187, 216, 309, 339, 342
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	6 cut(s)	185, 188, 217, 310, 340, 343
Bme1390I	CCNGG	2 cut(s)	160, 287
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	2 cut(s)	160, 287
BmsI	GCATC	1 cut(s)	261
BplI	GAGNNNNNCTC	4 cut(s)	69, 101, 260, 292
BpmI	CTGGAG	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	5 cut(s)	95, 128, 195, 264, 381
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 201, 293
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	5 cut(s)	95, 128, 195, 264, 381
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	96, 201, 293
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	281, 341
BseXI	GCAGC	2 cut(s)	227, 325
BshFI	GGCC	2 cut(s)	183, 205
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	75, 221, 287
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	96, 201, 293
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	183, 205
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	7 cut(s)	184, 187, 213, 245, 294, 308, 342
BspANI	GGCC	2 cut(s)	183, 205
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	95, 128, 195, 264, 381
BssT1I	CCWWGG	3 cut(s)	95, 195, 381
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	292, 346
BstDEI	CTNAG	1 cut(s)	332
BstENI	CCTNNNNNAGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	264, 339
BstHHI	GCGC	2 cut(s)	263, 338
BstMAI	GTCTC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 258, 300
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	158, 285
BstV1I	GCAGC	2 cut(s)	227, 325
BsuRI	GGCC	2 cut(s)	183, 205
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	292, 346
CfoI	GCGC	2 cut(s)	263, 338
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	84, 168, 183, 205, 331, 348
CviKI_1	RGCY	6 cut(s)	84, 168, 183, 205, 331, 348
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	3 cut(s)	95, 195, 381
Eco47III	AGCGCT	1 cut(s)	337
EcoNI	CCTNNNNNAGG	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	3 cut(s)	95, 195, 381
ErhI	CCWWGG	3 cut(s)	95, 195, 381
FaeI	CATG	1 cut(s)	193
FaiI	YATR	1 cut(s)	191
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	6 cut(s)	184, 187, 216, 309, 339, 342
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	6 cut(s)	184, 187, 216, 309, 339, 342
GlaI	GCGC	2 cut(s)	262, 337
GluI	GCNGC	6 cut(s)	184, 187, 216, 309, 339, 342
GsuI	CTGGAG	1 cut(s)	181
HaeII	RGCGCY	2 cut(s)	264, 339
HaeIII	GGCC	2 cut(s)	183, 205
HapII	CCGG	3 cut(s)	75, 221, 287
HhaI	GCGC	2 cut(s)	263, 338
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	261, 336
HinP1I	GCGC	2 cut(s)	261, 336
HpaII	CCGG	3 cut(s)	75, 221, 287
HphI	GGTGA	2 cut(s)	4, 9
Hpy188I	TCNGA	3 cut(s)	235, 280, 376
Hpy188III	TCNNGA	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 258, 300
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	261, 336
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	7 cut(s)	88, 145, 172, 219, 234, 300, 358
Lsp1109I	GCAGC	2 cut(s)	227, 325
LweI	GCATC	1 cut(s)	261
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	213, 399
MnlI	CCTC	7 cut(s)	25, 95, 115, 123, 259, 313, 319
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	3 cut(s)	75, 221, 287
MspR9I	CCNGG	2 cut(s)	160, 287
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	131, 258, 300
NciI	CCSGG	1 cut(s)	287
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	354
PkrI	GCNGC	6 cut(s)	185, 188, 217, 310, 340, 343
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	354
SatI	GCNGC	6 cut(s)	184, 187, 216, 309, 339, 342
ScrFI	CCNGG	2 cut(s)	160, 287
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	8 cut(s)	17, 161, 170, 197, 243, 324, 333, 358
SfaNI	GCATC	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	354
SsiI	CCGC	7 cut(s)	184, 187, 213, 245, 294, 308, 342
StyD4I	CCNGG	2 cut(s)	158, 285
StyI	CCWWGG	3 cut(s)	95, 195, 381
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	25
TauI	GCSGC	4 cut(s)	186, 189, 311, 344
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	2 cut(s)	215, 338
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.