RLG00000000580

CP12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009967
Physical Location & Seq
Reverse (-)
2197386 .. 2197769
384 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000580

Sequence Viewer

Length: 384 bp
ATGGCAACAAGTGTAGCAGGAGTGAGCCTCTCGACCCCAAGAGTCTTTGCTAGGGCGGCAGAGACACCCAAGGTTATTAAGCCAGCTGGCCTGAGCTTCGGGTACTCGGGTAGCCAGGTGGGTTCGGGACGGATGAGCATGATCCGACCGGTGGCAGCTGCCCCGGATAAACTATCGGAGAAGGTGAAGGAAAGCATCAAGGAGGCGGAGCAGGCGTGCTCGGAGGACCCGGCAAGCGGGGAGTGCGTGGCGGCGTGGGACGAGGTTGAGGAGCTGAGCGCGGCGGCGAGCCACAAGCGCGACAACGAAAAGAACAAGGACCCCTTGGAGACTTACTGCAACGACAACCCCGAAACCGACGAGTGCCGTACTTACGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CP12

Protein Analysis

128

Amino Acids

13.58

Weight (kDa)

4.75

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CP12 PF02672 58 - 126 2.1e-27 CP12 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 281, 300
AciI CCGC 6 cut(s) 56, 206, 237, 251, 281, 284
AclWI GGATC 1 cut(s) 136
AfaI GTAC 2 cut(s) 104, 370
AfiI CCNNNNNNNGG 2 cut(s) 151, 236
AgeI ACCGGT 1 cut(s) 148
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 4 cut(s) 86, 96, 158, 274
AluI AGCT 4 cut(s) 86, 96, 158, 274
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 56, 323
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 155, 158
AsiGI ACCGGT 1 cut(s) 148
AspLEI GCGC 2 cut(s) 281, 300
AspS9I GGNCC 2 cut(s) 226, 319
AsuC2I CCSGG 2 cut(s) 164, 230
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 2 cut(s) 226, 319
BaeI ACNNNNGTAYC 2 cut(s) 94, 127
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 145, 167
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 2 cut(s) 164, 230
BcoDI GTCTC 2 cut(s) 56, 323
BfaI CTAG 1 cut(s) 51
BisI GCNGC 6 cut(s) 57, 156, 159, 252, 282, 285
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 6 cut(s) 58, 157, 160, 253, 283, 286
Bme1390I CCNGG 3 cut(s) 116, 164, 230
Bme18I GGWCC 2 cut(s) 226, 319
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 226, 319
BmiI GGNNCC 2 cut(s) 228, 321
BmrFI CCNGG 3 cut(s) 116, 164, 230
BmsI GCATC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 12, 44
Bpu10I CCTNAGC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 275
BpuMI CCSGG 2 cut(s) 164, 230
BsaJI CCNNGG 3 cut(s) 69, 162, 324
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 236
Bse118I RCCGGY 1 cut(s) 148
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 69, 162, 324
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 151, 236
BseMII CTCAG 2 cut(s) 83, 266
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 145, 167
Bsh1236I CGCG 2 cut(s) 281, 300
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 90
BshTI ACCGGT 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 3 cut(s) 149, 164, 230
BslFI GGGAC 2 cut(s) 141, 272
BslI CCNNNNNNNGG 2 cut(s) 151, 236
BsmAI GTCTC 2 cut(s) 56, 323
BsmFI GGGAC 2 cut(s) 141, 272
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 141
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 6 cut(s) 56, 206, 237, 251, 281, 284
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 84, 267
BspFNI CGCG 2 cut(s) 281, 300
BspLI GGNNCC 2 cut(s) 228, 321
BspPI GGATC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 3 cut(s) 69, 162, 324
BssMI GATC 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 69, 324
Bst2UI CCWGG 1 cut(s) 116
BstC8I GCNNGC 6 cut(s) 84, 88, 213, 217, 235, 289
BstDEI CTNAG 2 cut(s) 92, 275
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 2 cut(s) 281, 300
BstHHI GCGC 2 cut(s) 281, 300
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 56, 323
BstMBI GATC 1 cut(s) 141
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 4 cut(s) 56, 212, 243, 297
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 3 cut(s) 114, 162, 228
BstUI CGCG 2 cut(s) 281, 300
BstV1I GCAGC 2 cut(s) 145, 167
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 6 cut(s) 84, 88, 213, 217, 235, 289
CfoI GCGC 2 cut(s) 281, 300
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 226, 319
Csp6I GTAC 2 cut(s) 103, 369
CspAI ACCGGT 1 cut(s) 148
CviAII CATG 1 cut(s) 139
CviJI RGCY 9 cut(s) 27, 82, 86, 90, 96, 114, 158, 274, 291
CviKI_1 RGCY 9 cut(s) 27, 82, 86, 90, 96, 114, 158, 274, 291
CviQI GTAC 2 cut(s) 103, 369
DdeI CTNAG 2 cut(s) 92, 275
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 69, 324
Eco47I GGWCC 2 cut(s) 226, 319
Eco88I CYCGRG 1 cut(s) 106
EcoO109I RGGNCCY 2 cut(s) 226, 319
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 69, 324
ErhI CCWWGG 2 cut(s) 69, 324
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 2 cut(s) 141, 272
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 6 cut(s) 57, 156, 159, 252, 282, 285
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 6 cut(s) 57, 156, 159, 252, 282, 285
FspBI CTAG 1 cut(s) 51
GlaI GCGC 2 cut(s) 280, 299
GluI GCNGC 6 cut(s) 57, 156, 159, 252, 282, 285
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 149, 164, 230
HhaI GCGC 2 cut(s) 281, 300
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 2 cut(s) 279, 298
HinP1I GCGC 2 cut(s) 279, 298
HinfI GANTC 1 cut(s) 42
HpaII CCGG 3 cut(s) 149, 164, 230
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 146, 178, 223
Hpy188III TCNNGA 2 cut(s) 31, 126
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 175, 181
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 212, 243, 297
HpyF3I CTNAG 2 cut(s) 92, 275
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 2 cut(s) 279, 298
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 208, 271
Lsp1109I GCAGC 2 cut(s) 145, 167
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 51
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 221
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 5 cut(s) 38, 196, 217, 256, 262
MseI TTAA 1 cut(s) 78
MspA1I CMGCKG 2 cut(s) 86, 158
MspI CCGG 3 cut(s) 149, 164, 230
MspR9I CCNGG 3 cut(s) 116, 164, 230
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 2 cut(s) 281, 300
MwoI GCNNNNNNNGC 4 cut(s) 56, 212, 243, 297
NciI CCSGG 2 cut(s) 164, 230
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 2 cut(s) 228, 321
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 6 cut(s) 58, 157, 160, 253, 283, 286
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 2 cut(s) 226, 319
Psp5II RGGWCCY 2 cut(s) 226, 319
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 228, 321
PspPI GGNCC 2 cut(s) 226, 319
PspPPI RGGWCCY 2 cut(s) 226, 319
PvuII CAGCTG 2 cut(s) 86, 158
RsaI GTAC 2 cut(s) 104, 370
RsaNI GTAC 2 cut(s) 103, 369
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 6 cut(s) 57, 156, 159, 252, 282, 285
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 226, 319
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 3 cut(s) 116, 164, 230
SduI GDGCHC 1 cut(s) 221
SetI ASST 8 cut(s) 75, 88, 98, 120, 160, 186, 267, 276
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 2 cut(s) 226, 319
SsiI CCGC 6 cut(s) 56, 206, 237, 251, 281, 284
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 114, 162, 228
StyI CCWWGG 2 cut(s) 69, 324
TaqI TCGA 1 cut(s) 32
TauI GCSGC 4 cut(s) 59, 254, 284, 287
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 2 cut(s) 155, 158
TspGWI ACGGA 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 226, 319
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.