Rw7G042110

CP12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009967
Physical Location & Seq
Forward (+)
65786694 .. 65787521
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042110.1

Sequence Viewer

Length: 459 bp
ATGCTAGGCTCCTTATCACAACGCCATTCTATCTCCCCACTTTTTTCAAAGCACAAACTTGTTAGAAAGAAAGAAATGGCAACAAGTGTAGCAGGAGTGAGCCTCTCGACCCCAAGAGTCTTTGCTAGGGCGGCAGAGACACCCAAGGTTATTAAGCCAGCTGGCCTGAGCTTCGGGTACTCGGGTAGCCAGGTGGGTTCGGGACGGATGAGCATGATCCGACCGGTGGCAGCTGCCCCGGATAAACTATCGGAGAAGGTGAAGGAGAGCATCAAGGAGGCGGAGCAGGCGTGCTCGGAGGACCCGGCGAGCGGGGAGTGCGTGGCGGCGTGGGACGAGGTTGAGGAGCTGAGCGCGGCGGCGAGCCACAAGCGCGACAACGAAAAGAACAAGGACCCCTTGGAGACTTACTGCAACGACAACCCCGAAACCGACGAGTGCCGTACTTACGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CP12

Protein Analysis

152

Amino Acids

16.47

Weight (kDa)

5.96

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CP12 PF02672 83 - 151 3.4e-27 CP12 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 312
AccII CGCG 2 cut(s) 356, 375
AciI CCGC 6 cut(s) 131, 281, 312, 326, 356, 359
AclWI GGATC 1 cut(s) 211
AfaI GTAC 2 cut(s) 179, 445
AfiI CCNNNNNNNGG 2 cut(s) 226, 311
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 48
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 4 cut(s) 161, 171, 233, 349
AluI AGCT 4 cut(s) 161, 171, 233, 349
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 131, 398
AlwI GGATC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 230, 233
AsiGI ACCGGT 1 cut(s) 223
AspLEI GCGC 2 cut(s) 356, 375
AspS9I GGNCC 2 cut(s) 301, 394
AsuC2I CCSGG 2 cut(s) 239, 305
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 2 cut(s) 301, 394
BaeI ACNNNNGTAYC 2 cut(s) 169, 202
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 220, 242
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 2 cut(s) 239, 305
BcoDI GTCTC 2 cut(s) 131, 398
BfaI CTAG 2 cut(s) 5, 126
BisI GCNGC 6 cut(s) 132, 231, 234, 327, 357, 360
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 6 cut(s) 133, 232, 235, 328, 358, 361
Bme1390I CCNGG 3 cut(s) 191, 239, 305
Bme18I GGWCC 2 cut(s) 301, 394
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 301, 394
BmiI GGNNCC 3 cut(s) 10, 303, 396
BmrFI CCNGG 3 cut(s) 191, 239, 305
BmsI GCATC 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 87, 119
Bpu10I CCTNAGC 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 239, 305
BsaJI CCNNGG 3 cut(s) 144, 237, 399
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 311
Bse118I RCCGGY 1 cut(s) 223
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 144, 237, 399
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 226, 311
BseMII CTCAG 2 cut(s) 158, 341
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 2 cut(s) 220, 242
Bsh1236I CGCG 2 cut(s) 356, 375
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 3 cut(s) 224, 239, 305
BslFI GGGAC 2 cut(s) 216, 347
BslI CCNNNNNNNGG 2 cut(s) 226, 311
BsmAI GTCTC 2 cut(s) 131, 398
BsmFI GGGAC 2 cut(s) 216, 347
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 216
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 6 cut(s) 131, 281, 312, 326, 356, 359
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 159, 342
BspFNI CGCG 2 cut(s) 356, 375
BspLI GGNNCC 3 cut(s) 10, 303, 396
BspPI GGATC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 144, 237, 399
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 144, 399
Bst2UI CCWGG 1 cut(s) 191
BstC8I GCNNGC 6 cut(s) 159, 163, 288, 292, 310, 364
BstDEI CTNAG 2 cut(s) 167, 350
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 2 cut(s) 356, 375
BstHHI GCGC 2 cut(s) 356, 375
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 2 cut(s) 131, 398
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 4 cut(s) 131, 287, 318, 372
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 189, 237, 303
BstUI CGCG 2 cut(s) 356, 375
BstV1I GCAGC 2 cut(s) 220, 242
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 6 cut(s) 159, 163, 288, 292, 310, 364
CfoI GCGC 2 cut(s) 356, 375
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 301, 394
Csp6I GTAC 2 cut(s) 178, 444
CspAI ACCGGT 1 cut(s) 223
CviAII CATG 1 cut(s) 214
CviQI GTAC 2 cut(s) 178, 444
DdeI CTNAG 2 cut(s) 167, 350
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 144, 399
Eco47I GGWCC 2 cut(s) 301, 394
Eco88I CYCGRG 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 301, 394
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 144, 399
ErhI CCWWGG 2 cut(s) 144, 399
FaeI CATG 1 cut(s) 217
FaiI YATR 1 cut(s) 215
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 2 cut(s) 216, 347
FatI CATG 1 cut(s) 213
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 6 cut(s) 132, 231, 234, 327, 357, 360
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 6 cut(s) 132, 231, 234, 327, 357, 360
FspBI CTAG 2 cut(s) 5, 126
GlaI GCGC 2 cut(s) 355, 374
GluI GCNGC 6 cut(s) 132, 231, 234, 327, 357, 360
HaeIII GGCC 1 cut(s) 165
HapII CCGG 3 cut(s) 224, 239, 305
HhaI GCGC 2 cut(s) 356, 375
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 2 cut(s) 354, 373
HinP1I GCGC 2 cut(s) 354, 373
HinfI GANTC 1 cut(s) 117
HpaII CCGG 3 cut(s) 224, 239, 305
HphI GGTGA 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 221, 253, 298
Hpy188III TCNNGA 2 cut(s) 106, 201
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 2 cut(s) 250, 256
HpyCH4V TGCA 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 287, 318, 372
HpyF3I CTNAG 2 cut(s) 167, 350
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 2 cut(s) 354, 373
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 14, 283, 346
Lsp1109I GCAGC 2 cut(s) 220, 242
LweI GCATC 1 cut(s) 279
MaeI CTAG 2 cut(s) 5, 126
MalI GATC 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 312
MboI GATC 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 296
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 5 cut(s) 113, 271, 292, 331, 337
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 2 cut(s) 161, 233
MspI CCGG 3 cut(s) 224, 239, 305
MspR9I CCNGG 3 cut(s) 191, 239, 305
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 2 cut(s) 356, 375
MwoI GCNNNNNNNGC 4 cut(s) 131, 287, 318, 372
NciI CCSGG 2 cut(s) 239, 305
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 3 cut(s) 10, 303, 396
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 6 cut(s) 133, 232, 235, 328, 358, 361
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 2 cut(s) 301, 394
Psp5II RGGWCCY 2 cut(s) 301, 394
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 10, 303, 396
PspPI GGNCC 2 cut(s) 301, 394
PspPPI RGGWCCY 2 cut(s) 301, 394
PvuII CAGCTG 2 cut(s) 161, 233
RsaI GTAC 2 cut(s) 179, 445
RsaNI GTAC 2 cut(s) 178, 444
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 6 cut(s) 132, 231, 234, 327, 357, 360
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 301, 394
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 3 cut(s) 191, 239, 305
SduI GDGCHC 1 cut(s) 296
SetI ASST 8 cut(s) 150, 163, 173, 195, 235, 261, 342, 351
SfaNI GCATC 1 cut(s) 279
SinI GGWCC 2 cut(s) 301, 394
SsiI CCGC 6 cut(s) 131, 281, 312, 326, 356, 359
SspMI CTAG 2 cut(s) 5, 126
StyD4I CCNGG 3 cut(s) 189, 237, 303
StyI CCWWGG 2 cut(s) 144, 399
TaqI TCGA 1 cut(s) 107
TauI GCSGC 4 cut(s) 134, 329, 359, 362
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 2 cut(s) 230, 233
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 301, 394
XspI CTAG 2 cut(s) 5, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.