Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Reverse (-)

37958604 .. 37963143

Gene Structure 4540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0343900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGTTAAAAATTCCAAAACTTTGGCATCCTCTGACCAAAAAGTTGCAATCTTTGATCAATACTCACCGTTTTGGGATTTTCTCAGCTGGGTATGTTAAGGGTAGCAATGACAATGGTTTTGAGTCAGAGAATGAGTGGGAGAGGTTGCTTAAGCCATTTGACCTCAATGAACTTCGGAAATCACTCGTTCAAATTACCCCAGTTCAGCTTTGTAAGTTACTTGAACTCCCACTTGACGTGCCCACGTCAATGGAAATGTTCGAATTGGTGGGTGCCCAGAGGGGATATAGCCATTCATTTGATGTGTACTATATGTTGATTGATAAGCTTGGCGCGGCGGGGGAGTTTAAGGTCATGGATAGGTTGTTGATGCAGATTAAAGATGAAGGGATGGTTTTTAGAGAGTCCATTTTCATTATGATCATGAAACATTATGGCAGAGCGGGCTTGCCTGGTCAGGCGACTAGGCTGCTTCTGGATATGAGAGGGGTTTATTCTTTTGAACCTACTTTCAAATCTTACAATGCTGTTTTGGATATACTGGTGGCTGGGAATTGCCCCAAGGTGGCACCCAATGTGTTCTATGACATGTTGAGTAGGGGCATCTCTCCCAATGTTTACACATTTGGGCTGGTTTTGAAGGCATTTTGTATGGTTAATGAGGTGGATTCTGCATGCTCGCTTCTTAGAGACATGACGAAGCATGGGTGTGTGCCGAATTCTGTGGTTTACCAGACTCTTATACATGCCCTCGCCAGAAATGAGCGAGTGAATGAAGCATTGAGACTTTTGGAGGAAATGTTCTTGATGGGTTGCACTCCTGATGTTCAGACTTTTAATGATATTATCCATGGTCTCTGCAAGGTCAATCGGATTCAGGAGGCAGCAAAGTTGGTTGATCGGATGCTTTTGCGGGGTTTTACTCCTGATGAGATAACTTATGGAGTTTTAATGAACGGATTATGTAGAACAGGGCAAGTTGATGAAGCAAGGGCATTGTTAAATAAAGTGCCTAGCCCGAATGCTGTGCTTTTCAATACCTTGATTAATGGTTATGTTACCAGTGGACGCTTTGATGAAGCCAAAGTTGTCTACTGTGATGGCATGCTGGGTAACAGCTGTGACCTTGATGTTTATACATTTAACATTCTGATTCGTGGACTTTGCAAGAAGGGCAGTTTGGCTTCTGCTCGTGAATTGATCAGTGAGATGGAAACTAAGGGCTGCAAGCCCAATGTGATAACTTACACGATATTGGTTGATGGGTTATGCAAGGAAGGTCAACTGCAGGAAGCTGGTGATGTTTTAAATGAGATGTCATACAAGGGTCTTGGTCCGAATATCGTGGGATACAATTGTCTAATATCTGCTCTCTGCAAGGATGGAAAGGTCCATGAAGCTTTAAAGTTGTTCAGTGAAATCTCAAGCAAAGGATGTAAGGCAGACATATTTACCTTTAATTCTTTGATATTTGGATTGTGCAAGGTTGATAGGATGGAAGAGGCATTGGGATTGTACCATGATATGTTATTGGAGGGTGTTATTGCCAACACTGTAACTTATAACACATTAATTCATGGTTTTCTGACTGGAGGTGCGATCCAAGAAGCACTGAAGCTTGTAAATGAAATGGTGTCTAGAGGATGCCCTCTTGACAAAATAACCTATAATGGGTTAGTAAAGGCACTCTGCAGAGCTGGGGCTGTTGAAAAAGCAAGGGGATTGTTTGAAGAAATGATGAGGACAGGACTTCATCCAGATAGTATCTCATGCAATATTTTGATTAATGGCCTCTGTAAAAGTGGCAAAGTATATGAAGCCCTTGAGTTCCTAAGGGATATGATTCATCGTGGTTTAATGCCCGATATAGTCACTTATAATAGCCTGATAAATGGTATGTGCAAGATGGGACACATTTGGGAAGCTTTGAATCTCTTTGACAGATTACAAGCTGAAGGGGTATGCCCTGATGCTATTACTTATAACACTTTGATCAGTTGGCATTGCAAAGAGGGCATGATTAATGATGCTTGTTTGCTTCTACATAGAGGTGTGACTAATGGATTCATACCAAATCATGTGACATGGTATATATTGGTCAGCAACCTGTCTAAAGAAAGAGGTTATGTCCATCAGGGCTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

715

Amino Acids

79.85

Weight (kDa)

6.51

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	173 - 217	2.2e-08	PPR repeat family
TPR_24	PF23276	185 - 298	6.5e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	200 - 233	1.4e-06	PPR repeat
PPR_2	PF13041	212 - 253	5.4e-09	PPR repeat family
PPR_long	PF17177	225 - 337	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	227 - 284	5.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 267	9.4e-10	PPR repeat
PPR_2	PF13041	239 - 288	2.1e-14	PPR repeat family
PPR_1	PF12854	270 - 302	5.1e-10	PPR repeat
PPR_2	PF13041	275 - 323	2.7e-14	PPR repeat family
PPR_1	PF12854	305 - 336	9.7e-09	PPR repeat
PPR_2	PF13041	340 - 390	2.7e-13	PPR repeat family
PPR_long	PF17177	368 - 479	3.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	373 - 405	1.9e-10	PPR repeat
PPR_3	PF13812	376 - 420	6.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	377 - 425	7.8e-19	PPR repeat family
PPR	PF01535	379 - 409	1.1e-06	PPR repeat
TPR_24	PF23276	400 - 508	4.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	407 - 440	1.2e-13	PPR repeat
PPR	PF01535	414 - 444	1.7e-06	PPR repeat
PPR_3	PF13812	435 - 490	1.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	442 - 473	2.4e-11	PPR repeat
PPR_2	PF13041	446 - 495	2.2e-18	PPR repeat family
PPR	PF01535	451 - 479	3.8e-08	PPR repeat
PPR_long	PF17177	460 - 616	1.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	477 - 509	3.8e-09	PPR repeat
PPR_2	PF13041	482 - 528	6.7e-14	PPR repeat family
PPR	PF01535	484 - 514	1.1e-06	PPR repeat
TPR_24	PF23276	513 - 612	9.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	513 - 545	7.7e-07	PPR repeat
PPR_2	PF13041	517 - 565	1.4e-16	PPR repeat family
PPR	PF01535	519 - 549	2e-06	PPR repeat
TPR_24	PF23276	546 - 648	2.8e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	547 - 579	4.7e-10	PPR repeat
PPR	PF01535	554 - 583	1.6e-06	PPR repeat
PPR_2	PF13041	554 - 600	4.4e-14	PPR repeat family
PPR_1	PF12854	583 - 614	2.4e-09	PPR repeat
PPR_2	PF13041	586 - 635	6.6e-18	PPR repeat family
PPR	PF01535	589 - 619	2.4e-07	PPR repeat
PPR_3	PF13812	611 - 667	6.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	617 - 648	1e-12	PPR repeat
PPR_2	PF13041	621 - 665	1.7e-14	PPR repeat family
PPR	PF01535	624 - 654	8.6e-08	PPR repeat
PPR_1	PF12854	653 - 682	1.2e-09	PPR repeat
PPR_2	PF13041	656 - 705	2.9e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1563, 1878, 1983
AccB1I	GGYRCC	2 cut(s)	272, 568
AccBSI	CCGCTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	1092
AccII	CGCG	1 cut(s)	335
AciI	CCGC	4 cut(s)	335, 338, 443, 913
AclWI	GGATC	1 cut(s)	1594
AcsI	RAATTY	2 cut(s)	9, 718
AcuI	CTGAAG	2 cut(s)	1634, 1974
AfaI	GTAC	2 cut(s)	308, 1517
AfiI	CCNNNNNNNGG	2 cut(s)	565, 1671
AflII	CTTAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	9 cut(s)	191, 224, 503, 514, 640, 1036, 1709, 1730, 1930
AjiI	CACGTC	2 cut(s)	238, 246
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	1163, 1195
AloI	GAACNNNNNNTCC	2 cut(s)	785, 817
Alw26I	GTCTC	3 cut(s)	684, 778, 860
AlwI	GGATC	1 cut(s)	1594
AoxI	GGCC	1 cut(s)	1789
ApeKI	GCWGC	3 cut(s)	469, 884, 1224
ApoI	RAATTY	2 cut(s)	9, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AseI	ATTAAT	4 cut(s)	1047, 1571, 1785, 2022
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	1334, 1390
AsuHPI	GGTGA	2 cut(s)	56, 1310
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	1334, 1390
AxyI	CCTNAGG	1 cut(s)	1832
BaeGI	GKGCMC	2 cut(s)	243, 277
BaeI	ACNNNNGTAYC	2 cut(s)	1342, 1375
BanI	GGYRCC	2 cut(s)	272, 568
BauI	CACGAG	1 cut(s)	1191
BbvI	GCAGC	3 cut(s)	456, 896, 1211
BccI	CCATC	9 cut(s)	385, 802, 1094, 1204, 1256, 1376, 1489, 1900, 2139
BcgI	CGANNNNNNTGC	4 cut(s)	451, 485, 1009, 1043
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	1343
BclI	TGATCA	4 cut(s)	54, 420, 1200, 1992
BcoDI	GTCTC	3 cut(s)	684, 778, 860
BfaI	CTAG	3 cut(s)	465, 1014, 1638
BfmI	CTRYAG	2 cut(s)	1286, 1690
BfrI	CTTAAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	1343
BisI	GCNGC	4 cut(s)	336, 470, 885, 1225
BlsI	GCNGC	4 cut(s)	337, 471, 886, 1226
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	2 cut(s)	1334, 1390
BmgBI	CACGTC	2 cut(s)	238, 246
BmgT120I	GGNCC	2 cut(s)	1334, 1390
BmiI	GGNNCC	2 cut(s)	274, 570
BmrFI	CCNGG	1 cut(s)	453
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	7 cut(s)	34, 360, 612, 894, 1634, 1960, 2017
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	1611
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	1408, 1844
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	561, 850
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 785, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 1671
Bse1I	ACTGG	4 cut(s)	200, 546, 1062, 1594
Bse21I	CCTNAGG	1 cut(s)	1832
Bse3DI	GCAATG	2 cut(s)	112, 2002
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	561, 850
BseGI	GGATG	8 cut(s)	25, 396, 909, 1387, 1439, 1500, 1649, 1753
BseLI	CCNNNNNNNGG	2 cut(s)	565, 1671
BseMI	GCAATG	2 cut(s)	112, 2002
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	4 cut(s)	200, 546, 1062, 1594
BseSI	GKGCMC	2 cut(s)	243, 277
BseXI	GCAGC	3 cut(s)	456, 896, 1211
BseYI	CCCAGC	4 cut(s)	86, 548, 1108, 1697
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	1791
BshNI	GGYRCC	2 cut(s)	272, 568
BslFI	GGGAC	1 cut(s)	1923
BslI	CCNNNNNNNGG	2 cut(s)	565, 1671
BsmAI	GTCTC	3 cut(s)	684, 778, 860
BsmFI	GGGAC	1 cut(s)	1923
BsmI	GAATGC	1 cut(s)	1027
BsnI	GGCC	1 cut(s)	1791
Bso31I	GGTCTC	1 cut(s)	860
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	243, 277
Bsp143I	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
Bsp19I	CCATGG	1 cut(s)	850
BspACI	CCGC	4 cut(s)	335, 338, 443, 913
BspANI	GGCC	1 cut(s)	1791
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	274, 570
BspMAI	CTGCAG	2 cut(s)	1290, 1694
BspPI	GGATC	1 cut(s)	1594
BspT104I	TTCGAA	1 cut(s)	261
BspT107I	GGYRCC	2 cut(s)	272, 568
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	860
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	112, 2002
BsrI	ACTGG	4 cut(s)	200, 546, 1062, 1594
BssECI	CCNNGG	2 cut(s)	561, 850
BssMI	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
BssSI	CACGAG	1 cut(s)	1191
BssT1I	CCWWGG	2 cut(s)	561, 850
Bst2BI	CACGAG	1 cut(s)	1191
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	68, 1097, 1555
Bst6I	CTCTTC	1 cut(s)	1494
BstAFI	CTTAAG	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	6 cut(s)	445, 449, 676, 680, 1106, 1229
BstDEI	CTNAG	4 cut(s)	82, 686, 1218, 1832
BstDSI	CCRYGG	1 cut(s)	850
BstF5I	GGATG	8 cut(s)	25, 396, 909, 1387, 1439, 1500, 1649, 1753
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	6 cut(s)	57, 423, 901, 1203, 1602, 1995
BstMAI	GTCTC	3 cut(s)	684, 778, 860
BstMBI	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
BstMWI	GCNNNNNNNGC	3 cut(s)	444, 1173, 2013
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	4 cut(s)	592, 678, 749, 1108
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	2 cut(s)	1286, 1690
BstSLI	GKGCMC	2 cut(s)	243, 277
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	456, 896, 1211
BstXI	CCANNNNNNTGG	2 cut(s)	21, 250
Bsu36I	CCTNAGG	1 cut(s)	1832
BsuI	GTATCC	1 cut(s)	1343
BsuRI	GGCC	1 cut(s)	1791
BtgI	CCRYGG	1 cut(s)	850
BtrI	CACGTC	2 cut(s)	238, 246
BtsCI	GGATG	8 cut(s)	25, 396, 909, 1387, 1439, 1500, 1649, 1753
BtsIMutI	CAGTG	5 cut(s)	1069, 1210, 1420, 1551, 1610
Cac8I	GCNNGC	6 cut(s)	445, 449, 676, 680, 1106, 1229
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	1334, 1390
CseI	GACGC	1 cut(s)	1077
Csp6I	GTAC	2 cut(s)	307, 1516
CviQI	GTAC	2 cut(s)	307, 1516
DdeI	CTNAG	4 cut(s)	82, 686, 1218, 1832
DpnI	GATC	6 cut(s)	56, 422, 900, 1202, 1601, 1994
DpnII	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
DraI	TTTAAA	2 cut(s)	1308, 1404
Eam1104I	CTCTTC	1 cut(s)	1494
EarI	CTCTTC	1 cut(s)	1494
Eco130I	CCWWGG	2 cut(s)	561, 850
Eco31I	GGTCTC	1 cut(s)	860
Eco47I	GGWCC	2 cut(s)	1334, 1390
Eco57I	CTGAAG	2 cut(s)	1634, 1974
Eco81I	CCTNAGG	1 cut(s)	1832
EcoRI	GAATTC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	561, 850
ErhI	CCWWGG	2 cut(s)	561, 850
FaqI	GGGAC	1 cut(s)	1923
FauI	CCCGC	3 cut(s)	331, 436, 906
FbaI	TGATCA	4 cut(s)	54, 420, 1200, 1992
FblI	GTMKAC	1 cut(s)	1092
Fnu4HI	GCNGC	4 cut(s)	336, 470, 885, 1225
FokI	GGATG	8 cut(s)	12, 403, 916, 1394, 1446, 1507, 1656, 1740
Fsp4HI	GCNGC	4 cut(s)	336, 470, 885, 1225
FspBI	CTAG	3 cut(s)	465, 1014, 1638
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	4 cut(s)	336, 470, 885, 1225
GsaI	CCCAGC	4 cut(s)	90, 552, 1112, 1701
GsuI	CTGGAG	1 cut(s)	1611
HaeIII	GGCC	1 cut(s)	1791
HgaI	GACGC	1 cut(s)	1077
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	1283
HindII	GTYRAC	1 cut(s)	1283
HindIII	AAGCTT	4 cut(s)	326, 1398, 1616, 1923
HinfI	GANTC	9 cut(s)	122, 404, 668, 736, 874, 1153, 1843, 1930, 2064
HphI	GGTGA	2 cut(s)	56, 1310
Hpy166II	GTNNAC	7 cut(s)	307, 619, 730, 1067, 1093, 1160, 1283
Hpy188I	TCNGA	9 cut(s)	33, 127, 177, 831, 873, 903, 1152, 1338, 1587
Hpy8I	GTNNAC	7 cut(s)	307, 619, 730, 1067, 1093, 1160, 1283
HpyAV	CCTTC	5 cut(s)	380, 634, 1165, 1271, 1949
HpyCH4III	ACNGT	3 cut(s)	68, 1097, 1555
HpyCH4IV	ACGT	2 cut(s)	237, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	444, 1173, 2013
HpyF3I	CTNAG	4 cut(s)	82, 686, 1218, 1832
HpySE526I	ACGT	2 cut(s)	237, 245
HspAI	GCGC	1 cut(s)	333
Ksp22I	TGATCA	4 cut(s)	54, 420, 1200, 1992
Kzo9I	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
Lsp1109I	GCAGC	3 cut(s)	456, 896, 1211
LweI	GCATC	7 cut(s)	34, 360, 612, 894, 1634, 1960, 2017
MaeI	CTAG	3 cut(s)	465, 1014, 1638
MaeII	ACGT	2 cut(s)	237, 245
MaeIII	GTNAC	8 cut(s)	216, 1057, 1112, 1121, 1555, 1870, 2053, 2080
MalI	GATC	6 cut(s)	56, 422, 900, 1202, 1601, 1994
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
MboII	GAAGA	2 cut(s)	1511, 1742
MfeI	CAATTG	1 cut(s)	1354
MhlI	GDGCHC	2 cut(s)	243, 277
MluCI	AATT	9 cut(s)	9, 192, 263, 553, 718, 1196, 1354, 1459, 1572
MlyI	GAGTC	3 cut(s)	131, 413, 730
MslI	CAYNNNNRTG	3 cut(s)	248, 708, 2049
MspA1I	CMGCKG	2 cut(s)	86, 1119
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	453
MunI	CAATTG	1 cut(s)	1354
Mva1269I	GAATGC	1 cut(s)	1027
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	444, 1173, 2013
NcoI	CCATGG	1 cut(s)	850
NdeII	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
NlaIV	GGNNCC	2 cut(s)	274, 570
NmuCI	GTSAC	4 cut(s)	1121, 1870, 2053, 2080
NspI	RCATGY	4 cut(s)	592, 678, 749, 1108
NspV	TTCGAA	1 cut(s)	261
PaeI	GCATGC	2 cut(s)	678, 1108
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	1 cut(s)	588
PctI	GAATGC	1 cut(s)	1027
PfeI	GAWTC	6 cut(s)	668, 874, 1153, 1843, 1930, 2064
PkrI	GCNGC	4 cut(s)	337, 471, 886, 1226
PleI	GAGTC	3 cut(s)	130, 412, 730
PpsI	GAGTC	3 cut(s)	130, 412, 730
PscI	ACATGT	1 cut(s)	588
PshBI	ATTAAT	4 cut(s)	1047, 1571, 1785, 2022
PsiI	TTATAA	3 cut(s)	1563, 1878, 1983
Psp6I	CCWGG	1 cut(s)	451
PspFI	CCCAGC	4 cut(s)	86, 548, 1108, 1697
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	274, 570
PspPI	GGNCC	2 cut(s)	1334, 1390
PstI	CTGCAG	2 cut(s)	1290, 1694
PvuII	CAGCTG	2 cut(s)	86, 1119
RsaI	GTAC	2 cut(s)	308, 1517
RsaNI	GTAC	2 cut(s)	307, 1516
RseI	CAYNNNNRTG	3 cut(s)	248, 708, 2049
SatI	GCNGC	4 cut(s)	336, 470, 885, 1225
Sau3AI	GATC	6 cut(s)	54, 420, 898, 1200, 1599, 1992
Sau96I	GGNCC	2 cut(s)	1334, 1390
SchI	GAGTC	3 cut(s)	131, 413, 730
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	243, 277
SfaNI	GCATC	7 cut(s)	34, 360, 612, 894, 1634, 1960, 2017
SfcI	CTRYAG	2 cut(s)	1286, 1690
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	2 cut(s)	1334, 1390
SmiMI	CAYNNNNRTG	3 cut(s)	248, 708, 2049
SmlI	CTYRAG	3 cut(s)	149, 1423, 1823
SmoI	CTYRAG	3 cut(s)	149, 1423, 1823
SphI	GCATGC	2 cut(s)	678, 1108
Sse9I	AATT	9 cut(s)	9, 192, 263, 553, 718, 1196, 1354, 1459, 1572
SsiI	CCGC	4 cut(s)	335, 338, 443, 913
SspI	AATATT	1 cut(s)	1777
SspMI	CTAG	3 cut(s)	465, 1014, 1638
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	2 cut(s)	561, 850
TaaI	ACNGT	3 cut(s)	68, 1097, 1555
TaiI	ACGT	2 cut(s)	240, 248
TaqI	TCGA	1 cut(s)	261
TasI	AATT	9 cut(s)	9, 192, 263, 553, 718, 1196, 1354, 1459, 1572
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	6 cut(s)	668, 874, 1153, 1843, 1930, 2064
TscAI	CASTG	5 cut(s)	1069, 1210, 1420, 1558, 1617
TseFI	GTSAC	4 cut(s)	1121, 1870, 2053, 2080
TseI	GCWGC	3 cut(s)	469, 884, 1224
Tsp45I	GTSAC	4 cut(s)	1121, 1870, 2053, 2080
TspGWI	ACGGA	1 cut(s)	972
TspRI	CASTG	5 cut(s)	1069, 1210, 1420, 1558, 1617
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	1334, 1390
VspI	ATTAAT	4 cut(s)	1047, 1571, 1785, 2022
XapI	RAATTY	2 cut(s)	9, 718
XbaI	TCTAGA	1 cut(s)	1637
XceI	RCATGY	4 cut(s)	592, 678, 749, 1108
XmiI	GTMKAC	1 cut(s)	1092
XspI	CTAG	3 cut(s)	465, 1014, 1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.