Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015905.1

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Forward (+)

24175 .. 26992

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015905.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

atggcgagcgatagcgaaccggcgaagctcctcttaccgtacctccaacgagccgatgagttgcagaaacacgagcctctcgtcgcttattactgtcgattatacgcaatggagcgagggctgaagattcctcagaacgagcgcaccaagaccaccaattccctcctgatttcgctcatgaagcagctcgaaaaggataaaaagtcactgcagttggggcctgaagacaatctgtatcttgagggatttgctttaaatgtttttgggaaggcagacaagcaagatcgtgctggtcgagcagatttgaatactgctaaaaccttctatgctgcaagcattttctttgagattattaaccagtttggtgtgcttcaacctgatcttgagcagaaacagaagtatgcggcttggaaagcagcagatataaggaaagctgtcaaggaaggaaggaaacctcaggctggcccccctgctggtgatgatgatctttcagttccctcgagtacaactagtggttcatatgatcttgggccaagcgaaactgcagttaccagtcctgggtcacggtccgatccttcatcccagttttacgatgaagtcaacaagcagcatcctacaaatattgcaccttctcaatttcatgataaagtcaatttccagcgttctgctagctttcaatcatcacctcagttccatgatagagttaatgaccagcattctgctaacattccaccaccatctcaatcttaccctagtgctggctacgcttcccatgatgtccttccacctcctccttcccatgatatccatcaaccgcctccttcccatgatgttcatccacctcctccttcccatgatgtgcatccacctccgccctcccatgatctccatctacctcctcctccctcccatgatatccatctacctcctcctccctcccatgacatccatctacctcctccaacaaatagaccaaacacttctgattatcctcagccataccaccagcaaccctacccacatgaaccccaacagccttcgccacatgactatcctcctcatgatattactaattacacctatcctaatttgagtaatttccaatcctatccaagttttacggaaagcagcattccagcagtctcgtcccagtatccctcttactatcaaggcactgatccttcctactttccccagtcagctccttcaacaactaactacccatcagcggcccaacaccaggcgagccacagaaatgggactgtttcagaacctgctcctcctgccccatcaaagactttccagtatgatagtagctacatgccatcaccagagaaaatagcagaggcacacaaggcagccagatttgcagttggagcattggcatttgatgatgtgtcagttgcggtggatcacttaataaaatcacttgagttgttgacgaacccatcagctggggtcggcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

489

Amino Acids

53.91

Weight (kDa)

5.97

Isoelectric Point (pI)

68.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1282
AccB7I	CCANNNNNTGG	1 cut(s)	1454
AciI	CCGC	5 cut(s)	404, 815, 872, 1229, 1406
AclWI	GGATC	3 cut(s)	566, 1172, 1419
AcuI	CTGAAG	2 cut(s)	143, 243
AfaI	GTAC	2 cut(s)	41, 505
AfiI	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1228, 1240, 1454
AgsI	TTSAA	4 cut(s)	307, 374, 677, 1209
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	556, 1239
AluBI	AGCT	7 cut(s)	28, 187, 434, 672, 1202, 1317, 1454
AluI	AGCT	7 cut(s)	28, 187, 434, 672, 1202, 1317, 1454
Alw26I	GTCTC	1 cut(s)	1147
AlwI	GGATC	3 cut(s)	566, 1172, 1419
AlwNI	CAGNNNCTG	1 cut(s)	1274
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	4 cut(s)	218, 463, 530, 1230
ApeKI	GCWGC	6 cut(s)	184, 329, 416, 607, 1128, 1358
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	5 cut(s)	218, 464, 530, 567, 1231
AsuHPI	GGTGA	3 cut(s)	488, 675, 1320
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	567
AxyI	CCTNAGG	1 cut(s)	456
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	6 cut(s)	196, 316, 428, 619, 1140, 1370
BccI	CCATC	9 cut(s)	745, 816, 897, 927, 957, 1231, 1297, 1333, 1456
BciT130I	CCWGG	2 cut(s)	558, 1241
BciVI	GTATCC	1 cut(s)	1164
BcoDI	GTCTC	1 cut(s)	1147
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	3 cut(s)	510, 669, 753
BfmI	CTRYAG	2 cut(s)	209, 543
BfuAI	ACCTGC	1 cut(s)	1282
BfuI	GTATCC	1 cut(s)	1164
BisI	GCNGC	8 cut(s)	185, 330, 405, 417, 608, 1129, 1230, 1359
BlsI	GCNGC	8 cut(s)	186, 331, 406, 418, 609, 1130, 1231, 1360
Bme1390I	CCNGG	2 cut(s)	558, 1241
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	5 cut(s)	218, 464, 530, 567, 1231
BmiI	GGNNCC	2 cut(s)	219, 466
BmrFI	CCNGG	2 cut(s)	558, 1241
BmrI	ACTGGG	3 cut(s)	577, 1144, 1189
BmsI	GCATC	2 cut(s)	619, 871
BmtI	GCTAGC	1 cut(s)	672
BmuI	ACTGGG	3 cut(s)	577, 1144, 1189
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	993
BpuEI	CTTGAG	3 cut(s)	260, 404, 1451
BsaBI	GATNNNNATC	6 cut(s)	483, 807, 834, 861, 888, 918
BsaJI	CCNNGG	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1228, 1240, 1454
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	6 cut(s)	358, 552, 583, 1150, 1195, 1303
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	6 cut(s)	483, 807, 834, 861, 888, 918
BseBI	CCWGG	2 cut(s)	558, 1241
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	5 cut(s)	578, 610, 835, 862, 945
BseJI	GATNNNNATC	6 cut(s)	483, 807, 834, 861, 888, 918
BseLI	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1228, 1240, 1454
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	4 cut(s)	146, 470, 701, 1007
BseNI	ACTGG	6 cut(s)	358, 552, 583, 1150, 1195, 1303
BseXI	GCAGC	6 cut(s)	196, 316, 428, 619, 1140, 1370
BseYI	CCCAGC	1 cut(s)	1454
BshFI	GGCC	4 cut(s)	220, 465, 532, 1232
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	1132, 1273
BslI	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1228, 1240, 1454
BsmAI	GTCTC	1 cut(s)	1147
BsmFI	GGGAC	2 cut(s)	1132, 1273
BsmI	GAATGC	2 cut(s)	715, 1131
BsnI	GGCC	4 cut(s)	220, 465, 532, 1232
BsoBI	CYCGRG	1 cut(s)	499
Bsp143I	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
BspACI	CCGC	5 cut(s)	404, 815, 872, 1229, 1406
BspANI	GGCC	4 cut(s)	220, 465, 532, 1232
BspCNI	CTCAG	4 cut(s)	145, 469, 700, 1006
BspHI	TCATGA	3 cut(s)	177, 640, 1060
BspLI	GGNNCC	2 cut(s)	219, 466
BspMAI	CTGCAG	2 cut(s)	213, 547
BspMI	ACCTGC	1 cut(s)	1282
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	3 cut(s)	566, 1172, 1419
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	6 cut(s)	358, 552, 583, 1150, 1195, 1303
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	558, 1241
Bst4CI	ACNGT	4 cut(s)	39, 95, 567, 1264
BstC8I	GCNNGC	6 cut(s)	7, 334, 463, 670, 760, 1246
BstDEI	CTNAG	4 cut(s)	132, 456, 687, 993
BstF5I	GGATG	5 cut(s)	578, 610, 835, 862, 945
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	8 cut(s)	286, 382, 487, 526, 574, 886, 1180, 1414
BstMAI	GTCTC	1 cut(s)	1147
BstMBI	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
BstMWI	GCNNNNNNNGC	9 cut(s)	181, 217, 296, 413, 764, 1283, 1355, 1367, 1376
BstNI	CCWGG	2 cut(s)	558, 1241
BstNSI	RCATGY	1 cut(s)	1324
BstSCI	CCNGG	2 cut(s)	556, 1239
BstSFI	CTRYAG	2 cut(s)	209, 543
BstV1I	GCAGC	6 cut(s)	196, 316, 428, 619, 1140, 1370
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	1256
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	1164
BsuRI	GGCC	4 cut(s)	220, 465, 532, 1232
BtsCI	GGATG	5 cut(s)	578, 610, 835, 862, 945
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	206, 1173
BveI	ACCTGC	1 cut(s)	1282
Cac8I	GCNNGC	6 cut(s)	7, 334, 463, 670, 760, 1246
CaiI	CAGNNNCTG	1 cut(s)	1274
CciI	TCATGA	3 cut(s)	177, 640, 1060
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	5 cut(s)	218, 464, 530, 567, 1231
CpoI	CGGWCCG	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	40, 504
CspI	CGGWCCG	1 cut(s)	567
CviQI	GTAC	2 cut(s)	40, 504
DdeI	CTNAG	4 cut(s)	132, 456, 687, 993
DpnI	GATC	8 cut(s)	285, 381, 486, 525, 573, 885, 1179, 1413
DpnII	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
DraI	TTTAAA	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	861
Eco32I	GATATC	2 cut(s)	805, 916
Eco47I	GGWCC	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	143, 243
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	556, 1239
EcoRV	GATATC	2 cut(s)	805, 916
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	2 cut(s)	1132, 1273
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	8 cut(s)	185, 330, 405, 417, 608, 1129, 1230, 1359
FokI	GGATG	5 cut(s)	565, 597, 822, 849, 932
Fsp4HI	GCNGC	8 cut(s)	185, 330, 405, 417, 608, 1129, 1230, 1359
FspBI	CTAG	3 cut(s)	510, 669, 753
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	8 cut(s)	185, 330, 405, 417, 608, 1129, 1230, 1359
GsaI	CCCAGC	1 cut(s)	1458
HaeIII	GGCC	4 cut(s)	220, 465, 532, 1232
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	2 cut(s)	601, 1440
HindII	GTYRAC	2 cut(s)	601, 1440
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	488, 675, 1320
Hpy166II	GTNNAC	2 cut(s)	601, 1440
Hpy188I	TCNGA	4 cut(s)	135, 571, 985, 1270
Hpy188III	TCNNGA	6 cut(s)	166, 178, 239, 383, 641, 1061
Hpy8I	GTNNAC	2 cut(s)	601, 1440
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	4 cut(s)	39, 95, 567, 1264
HpyCH4V	TGCA	7 cut(s)	64, 211, 332, 545, 626, 862, 1370
HpyF10VI	GCNNNNNNNGC	9 cut(s)	181, 217, 296, 413, 764, 1283, 1355, 1367, 1376
HpyF3I	CTNAG	4 cut(s)	132, 456, 687, 993
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
LmnI	GCTCC	5 cut(s)	33, 112, 1207, 1282, 1376
Lsp1109I	GCAGC	6 cut(s)	196, 316, 428, 619, 1140, 1370
LweI	GCATC	2 cut(s)	619, 871
MaeI	CTAG	3 cut(s)	510, 669, 753
MaeIII	GTNAC	3 cut(s)	204, 547, 561
MalI	GATC	8 cut(s)	285, 381, 486, 525, 573, 885, 1179, 1413
MboI	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
MboII	GAAGA	2 cut(s)	136, 236
MluCI	AATT	6 cut(s)	157, 635, 652, 1072, 1087, 1096
MmeI	TCCRAC	3 cut(s)	70, 986, 1354
MseI	TTAA	4 cut(s)	254, 354, 705, 1418
MslI	CAYNNNNRTG	1 cut(s)	1254
MspA1I	CMGCKG	2 cut(s)	1229, 1454
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	558, 1241
Mva1269I	GAATGC	2 cut(s)	715, 1131
MvaI	CCWGG	2 cut(s)	558, 1241
MwoI	GCNNNNNNNGC	9 cut(s)	181, 217, 296, 413, 764, 1283, 1355, 1367, 1376
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
NheI	GCTAGC	1 cut(s)	668
NlaIV	GGNNCC	2 cut(s)	219, 466
NmuCI	GTSAC	2 cut(s)	204, 561
NspI	RCATGY	1 cut(s)	1324
PaeR7I	CTCGAG	1 cut(s)	499
PagI	TCATGA	3 cut(s)	177, 640, 1060
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 292
PctI	GAATGC	2 cut(s)	715, 1131
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	1454
PkrI	GCNGC	8 cut(s)	186, 331, 406, 418, 609, 1130, 1231, 1360
Psp6I	CCWGG	2 cut(s)	556, 1239
PspFI	CCCAGC	1 cut(s)	1454
PspGI	CCWGG	2 cut(s)	556, 1239
PspN4I	GGNNCC	2 cut(s)	219, 466
PspPI	GGNCC	5 cut(s)	218, 464, 530, 567, 1231
PspXI	VCTCGAGB	1 cut(s)	499
PstI	CTGCAG	2 cut(s)	213, 547
PstNI	CAGNNNCTG	1 cut(s)	1274
PvuII	CAGCTG	1 cut(s)	1454
RsaI	GTAC	2 cut(s)	41, 505
RsaNI	GTAC	2 cut(s)	40, 504
RseI	CAYNNNNRTG	1 cut(s)	1254
Rsr2I	CGGWCCG	1 cut(s)	567
RsrII	CGGWCCG	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	254, 354, 705, 1418
SatI	GCNGC	8 cut(s)	185, 330, 405, 417, 608, 1129, 1230, 1359
Sau3AI	GATC	8 cut(s)	283, 379, 484, 523, 571, 883, 1177, 1411
Sau96I	GGNCC	5 cut(s)	218, 464, 530, 567, 1231
ScrFI	CCNGG	2 cut(s)	558, 1241
SfaNI	GCATC	2 cut(s)	619, 871
SfcI	CTRYAG	2 cut(s)	209, 543
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	567
SlaI	CTCGAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	1254
SmlI	CTYRAG	4 cut(s)	239, 383, 499, 1430
SmoI	CTYRAG	4 cut(s)	239, 383, 499, 1430
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	6 cut(s)	157, 635, 652, 1072, 1087, 1096
SsiI	CCGC	5 cut(s)	404, 815, 872, 1229, 1406
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	3 cut(s)	510, 669, 753
StyD4I	CCNGG	2 cut(s)	556, 1239
TaaI	ACNGT	4 cut(s)	39, 95, 567, 1264
TaqI	TCGA	4 cut(s)	97, 189, 295, 500
TasI	AATT	6 cut(s)	157, 635, 652, 1072, 1087, 1096
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	2 cut(s)	407, 1232
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	4 cut(s)	254, 354, 705, 1418
Tru9I	TTAA	4 cut(s)	254, 354, 705, 1418
TscAI	CASTG	2 cut(s)	213, 1180
TseFI	GTSAC	2 cut(s)	204, 561
TseI	GCWGC	6 cut(s)	184, 329, 416, 607, 1128, 1358
Tsp45I	GTSAC	2 cut(s)	204, 561
TspDTI	ATGAA	7 cut(s)	194, 507, 567, 609, 629, 824, 1038
TspGWI	ACGGA	1 cut(s)	1136
TspRI	CASTG	2 cut(s)	213, 1180
Van91I	CCANNNNNTGG	1 cut(s)	1454
VpaK11BI	GGWCC	1 cut(s)	567
XceI	RCATGY	1 cut(s)	1324
XhoI	CTCGAG	1 cut(s)	499
XspI	CTAG	3 cut(s)	510, 669, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.