MD00G1179000.v1.1

Vacuolar protein sorting-associated protein VTA1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
42083823 .. 42087155
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1179000.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGCGAGCGAAAACGAGCCGGCGAAGCTGCTGTTGCCGTATCTCCAGCGCGCCGATGAGTTGCAGAAACACGAGCCTCTCGTCGCTTATTACTGTCGATTATACGCAATGGAGAGAGGGCTGAAGATCCCGCAGAACGAGCGCACTAAGACCACGAATTCCCTCCTCATTTCCCTCATGAAGCAGCTTGAAAAGGATAAGAAGTCGCTGCAGTTGGGGCCTGAAGACAATCTGTATCTTGAGGGATTTGCCTTAAATGTTTTTGGCAAGGCGGACAAGCAAGATCGTGCTGGTCGAGCAGATTTGACTACTGCAAAAACATTTTATGCTGCAAGCATTTTTTTTGAGATTCTTAACCAATTCGGCGTGGTTCAGCCTGATCTTGAGCAAAAACAAAAGTATGCAGCTTGGAAAGCAGCAGATATAAGGAAAGCTTTGAAAGAAGGAAGGAGGCCTCAAGCAGGCCCCCCTGCTGGTGATGATGATCTCTCACTTCCATCTAGTGGAATGAGTGGTTCATATGATCTTGGCCCAAGTGATGCTGCAGTTACCAGTCCTGGATCACAGTCTGACCCTTCACCCCAGTTTCATGATGAAGTCAACAGGCAGCATTCTATAAAAACTGCACCACCGCAGTTTCAGGATCAGCATTCTACAAACATTGCACCTTATGAGTTTCATGATGACGCTAAATTCCAACGTTCTACTAGCCTTCAGTCACCACCTAAGTTTCCTGATGAAGTCAATGGCCAGCATTCTACTAACAATGTGTCACCGCCACCTCAGTCTTACCCTACTGCTGGTTACTCTTCCCATGATTTTCACCCACCTCCTCCTACAAATAGACCGGAAACGTCTGATTTTTCTCAGCCATACCACCAGCAATCCTACTCGCATGAACCCCAACAGCCTTTGCCACCTAACTATCCCCCTCATGAATCTAATTACCCCTATCCTAATTTCCAATCGTATCCAAGTTTTACAGAAACCAATATTCCAGCAGTTTCATCCCACTATCCCTCTTATTATCAGGGCTCTGATCCTTCCTACTCTCCCCAGTCAGCTCCTTCGACAACAGACCACCCTTCAACTACCCAATACCAGACGAGCAACAGAAATGGGACTGTTTCAGAACCTACTCCTGCTCCTCCCCCTGCCAAGACATACCAGTATGACAGTAGCTACCAGCCATCACCTGAGAAAATTGCCGAGGCACATAAGGCCGCAAGATTTGCAGTTGGAGCATTGGCATTTGATGACGTGTCAGTTGCTGTAGATCACTTGATAAAATCGCTTGAACTGTTGACTAATCCATCAGCTGGTCAGTAA

Protein Analysis

443

Amino Acids

48.96

Weight (kDa)

5.58

Isoelectric Point (pI)

62.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vta1 PF04652 12 - 148 8.8e-47 Vta1 like
Vta1_C PF18097 399 - 436 1.6e-09 Vta1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 503, 1319
AccII CGCG 1 cut(s) 51
AciI CCGC 5 cut(s) 131, 272, 632, 776, 1224
AclI AACGTT 1 cut(s) 700
AclWI GGATC 4 cut(s) 121, 568, 651, 1034
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 2 cut(s) 157, 692
AcuI CTGAAG 3 cut(s) 143, 243, 698
AfiI CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 4 cut(s) 191, 439, 1089, 1298
AjiI CACGTC 1 cut(s) 1261
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 7 cut(s) 28, 187, 407, 434, 1064, 1182, 1319
AluI AGCT 7 cut(s) 28, 187, 407, 434, 1064, 1182, 1319
AlwI GGATC 4 cut(s) 121, 568, 651, 1034
AlwNI CAGNNNCTG 1 cut(s) 1271
AoxI GGCC 6 cut(s) 218, 452, 463, 529, 748, 1221
ApeKI GCWGC 8 cut(s) 28, 184, 208, 329, 404, 416, 542, 607
ApoI RAATTY 2 cut(s) 157, 692
AspLEI GCGC 3 cut(s) 51, 53, 144
AspS9I GGNCC 3 cut(s) 218, 464, 530
AsuHPI GGTGA 6 cut(s) 488, 570, 711, 765, 815, 1185
BalI TGGCCA 1 cut(s) 750
BanII GRGCYC 1 cut(s) 1037
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 8 cut(s) 15, 195, 196, 316, 416, 428, 529, 619
BccI CCATC 3 cut(s) 505, 1198, 1321
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 558
BciVI GTATCC 1 cut(s) 981
BfaI CTAG 2 cut(s) 501, 708
BfmI CTRYAG 3 cut(s) 209, 543, 1272
BfuI GTATCC 1 cut(s) 981
BisI GCNGC 9 cut(s) 29, 185, 209, 330, 405, 417, 543, 608, 1224
BlsI GCNGC 9 cut(s) 30, 186, 210, 331, 406, 418, 544, 609, 1225
Bme1390I CCNGG 1 cut(s) 558
BmgBI CACGTC 1 cut(s) 1261
BmgT120I GGNCC 3 cut(s) 218, 464, 530
BmiI GGNNCC 2 cut(s) 219, 466
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 2 cut(s) 577, 1051
BmsI GCATC 1 cut(s) 529
BmuI ACTGGG 2 cut(s) 577, 1051
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 3 cut(s) 260, 404, 441
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 1209
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 1129, 1159
Bsc4I CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 4 cut(s) 552, 583, 1057, 1168
Bse3DI GCAATG 2 cut(s) 114, 660
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 1209
BseGI GGATG 1 cut(s) 1007
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
BseMI GCAATG 2 cut(s) 114, 660
BseMII CTCAG 3 cut(s) 797, 881, 1188
BseNI ACTGG 4 cut(s) 552, 583, 1057, 1168
BsePI GCGCGC 1 cut(s) 49
BseRI GAGGAG 3 cut(s) 155, 822, 1137
BseXI GCAGC 8 cut(s) 15, 195, 196, 316, 416, 428, 529, 619
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 6 cut(s) 220, 454, 465, 531, 750, 1223
BsiSI CCGG 2 cut(s) 20, 848
BslFI GGGAC 1 cut(s) 1135
BslI CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
BsmFI GGGAC 1 cut(s) 1135
BsmI GAATGC 3 cut(s) 610, 649, 754
BsnI GGCC 6 cut(s) 220, 454, 465, 531, 750, 1223
Bsp1286I GDGCHC 1 cut(s) 1037
Bsp143I GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
BspACI CCGC 5 cut(s) 131, 272, 632, 776, 1224
BspANI GGCC 6 cut(s) 220, 454, 465, 531, 750, 1223
BspCNI CTCAG 3 cut(s) 796, 880, 1189
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 4 cut(s) 177, 589, 679, 934
BspLI GGNNCC 2 cut(s) 219, 466
BspMAI CTGCAG 2 cut(s) 213, 547
BspPI GGATC 4 cut(s) 121, 568, 651, 1034
BsrDI GCAATG 2 cut(s) 114, 660
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 4 cut(s) 552, 583, 1057, 1168
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 1209
BssHII GCGCGC 1 cut(s) 49
BssMI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 5 cut(s) 95, 567, 1126, 1178, 1302
Bst6I CTCTTC 1 cut(s) 814
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstC8I GCNNGC 6 cut(s) 7, 21, 51, 334, 463, 752
BstDEI CTNAG 5 cut(s) 147, 726, 783, 867, 1197
BstENI CCTNNNNNAGG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 1007
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 3 cut(s) 51, 53, 144
BstKTI GATC 9 cut(s) 129, 286, 382, 487, 526, 563, 646, 1042, 1279
BstMBI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
BstMWI GCNNNNNNNGC 9 cut(s) 25, 34, 139, 217, 296, 413, 1220, 1232, 1241
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 3 cut(s) 209, 543, 1272
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 8 cut(s) 15, 195, 196, 316, 416, 428, 529, 619
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuI GTATCC 1 cut(s) 981
BsuRI GGCC 6 cut(s) 220, 454, 465, 531, 750, 1223
BtrI CACGTC 1 cut(s) 1261
BtsCI GGATG 1 cut(s) 1007
Cac8I GCNNGC 6 cut(s) 7, 21, 51, 334, 463, 752
CaiI CAGNNNCTG 1 cut(s) 1271
CciI TCATGA 4 cut(s) 177, 589, 679, 934
CfoI GCGC 3 cut(s) 51, 53, 144
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 218, 464, 530
CseI GACGC 1 cut(s) 695
CviAII CATG 6 cut(s) 178, 590, 680, 815, 896, 935
DdeI CTNAG 5 cut(s) 147, 726, 783, 867, 1197
DpnI GATC 9 cut(s) 128, 285, 381, 486, 525, 562, 645, 1041, 1278
DpnII GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
EciI GGCGGA 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 1037
Eco57I CTGAAG 3 cut(s) 143, 243, 698
EcoNI CCTNNNNNAGG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 218, 464
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 1037
FaeI CATG 6 cut(s) 181, 593, 683, 818, 899, 938
FalI AAGNNNNNCTT 2 cut(s) 418, 450
FaqI GGGAC 1 cut(s) 1135
FatI CATG 6 cut(s) 177, 589, 679, 814, 895, 934
FauI CCCGC 1 cut(s) 138
FauNDI CATATG 1 cut(s) 520
Fnu4HI GCNGC 9 cut(s) 29, 185, 209, 330, 405, 417, 543, 608, 1224
FokI GGATG 1 cut(s) 994
FriOI GRGCYC 1 cut(s) 1037
Fsp4HI GCNGC 9 cut(s) 29, 185, 209, 330, 405, 417, 543, 608, 1224
FspBI CTAG 2 cut(s) 501, 708
GlaI GCGC 3 cut(s) 50, 52, 143
GluI GCNGC 9 cut(s) 29, 185, 209, 330, 405, 417, 543, 608, 1224
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 6 cut(s) 220, 454, 465, 531, 750, 1223
HapII CCGG 2 cut(s) 20, 848
HgaI GACGC 1 cut(s) 695
HhaI GCGC 3 cut(s) 51, 53, 144
Hin1II CATG 6 cut(s) 181, 593, 683, 818, 899, 938
Hin6I GCGC 3 cut(s) 49, 51, 142
HinP1I GCGC 3 cut(s) 49, 51, 142
HincII GTYRAC 2 cut(s) 601, 1305
HindII GTYRAC 2 cut(s) 601, 1305
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 2 cut(s) 349, 938
HpaII CCGG 2 cut(s) 20, 848
HphI GGTGA 6 cut(s) 488, 570, 711, 765, 815, 1185
Hpy166II GTNNAC 2 cut(s) 601, 1305
Hpy188I TCNGA 4 cut(s) 571, 859, 1039, 1132
Hpy188III TCNNGA 8 cut(s) 178, 239, 383, 590, 641, 680, 734, 935
Hpy8I GTNNAC 2 cut(s) 601, 1305
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 7 cut(s) 437, 441, 585, 722, 1053, 1077, 1095
HpyCH4III ACNGT 5 cut(s) 95, 567, 1126, 1178, 1302
HpyCH4IV ACGT 3 cut(s) 700, 854, 1260
HpyCH4V TGCA 9 cut(s) 64, 211, 314, 332, 404, 545, 626, 665, 1235
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 34, 139, 217, 296, 413, 1220, 1232, 1241
HpyF3I CTNAG 5 cut(s) 147, 726, 783, 867, 1197
HpySE526I ACGT 3 cut(s) 700, 854, 1260
Hsp92II CATG 6 cut(s) 181, 593, 683, 818, 899, 938
HspAI GCGC 3 cut(s) 49, 51, 142
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
LmnI GCTCC 3 cut(s) 1069, 1150, 1241
Lsp1109I GCAGC 8 cut(s) 15, 195, 196, 316, 416, 428, 529, 619
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 501, 708
MaeII ACGT 3 cut(s) 700, 854, 1260
MaeIII GTNAC 4 cut(s) 547, 717, 771, 803
MalI GATC 9 cut(s) 128, 285, 381, 486, 525, 562, 645, 1041, 1278
MboI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
MboII GAAGA 3 cut(s) 136, 236, 801
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 1037
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 6 cut(s) 157, 359, 692, 943, 958, 1203
MluNI TGGCCA 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 721, 1219
Mox20I TGGCCA 1 cut(s) 750
MroNI GCCGGC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 750
MseI TTAA 2 cut(s) 254, 354
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 1319
MspI CCGG 2 cut(s) 20, 848
MspR9I CCNGG 1 cut(s) 558
Mva1269I GAATGC 3 cut(s) 610, 649, 754
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 9 cut(s) 25, 34, 139, 217, 296, 413, 1220, 1232, 1241
NaeI GCCGGC 1 cut(s) 21
NdeI CATATG 1 cut(s) 520
NdeII GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 6 cut(s) 181, 593, 683, 818, 899, 938
NlaIV GGNNCC 2 cut(s) 219, 466
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 2 cut(s) 717, 771
PagI TCATGA 4 cut(s) 177, 589, 679, 934
PauI GCGCGC 1 cut(s) 49
PceI AGGCCT 1 cut(s) 454
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 292
PctI GAATGC 3 cut(s) 610, 649, 754
PdiI GCCGGC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 349, 938
PflMI CCANNNNNTGG 2 cut(s) 503, 1319
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 9 cut(s) 30, 186, 210, 331, 406, 418, 544, 609, 1225
Psp1406I AACGTT 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 2 cut(s) 219, 466
PspPI GGNCC 3 cut(s) 218, 464, 530
PstI CTGCAG 2 cut(s) 213, 547
PstNI CAGNNNCTG 1 cut(s) 1271
PsuI RGATCY 1 cut(s) 126
PteI GCGCGC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 1319
SaqAI TTAA 2 cut(s) 254, 354
SatI GCNGC 9 cut(s) 29, 185, 209, 330, 405, 417, 543, 608, 1224
Sau3AI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 643, 1039, 1276
Sau96I GGNCC 3 cut(s) 218, 464, 530
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 1037
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 3 cut(s) 209, 543, 1272
SmlI CTYRAG 3 cut(s) 239, 383, 456
SmoI CTYRAG 3 cut(s) 239, 383, 456
Sse9I AATT 6 cut(s) 157, 359, 692, 943, 958, 1203
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 5 cut(s) 131, 272, 632, 776, 1224
SspI AATATT 1 cut(s) 994
SspMI CTAG 2 cut(s) 501, 708
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 5 cut(s) 95, 567, 1126, 1178, 1302
TaiI ACGT 3 cut(s) 703, 857, 1263
TaqI TCGA 3 cut(s) 97, 295, 1070
TasI AATT 6 cut(s) 157, 359, 692, 943, 958, 1203
TauI GCSGC 1 cut(s) 1226
TfiI GAWTC 2 cut(s) 349, 938
Tru1I TTAA 2 cut(s) 254, 354
Tru9I TTAA 2 cut(s) 254, 354
TseFI GTSAC 2 cut(s) 717, 771
TseI GCWGC 8 cut(s) 28, 184, 208, 329, 404, 416, 542, 607
Tsp45I GTSAC 2 cut(s) 717, 771
TspDTI ATGAA 9 cut(s) 194, 507, 578, 609, 668, 753, 912, 951, 996
Van91I CCANNNNNTGG 2 cut(s) 503, 1319
XagI CCTNNNNNAGG 1 cut(s) 459
XapI RAATTY 2 cut(s) 157, 692
XspI CTAG 2 cut(s) 501, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.