Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Forward (+)

55454726 .. 55458292

Gene Structure 3567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG469100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGATCTTTTTGCAGCTTGAGCAGAAACAGAAGTATGCAGCTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCCCCCTGCGGGTGATGATGATCTTTCAGTTCCCTCGAGTACAACTAGTGGTTCATATGATCTTGGGCCAAGTGAAACTGCAGCTACCAGTCCTGGGCCACAGTCCGATCCTTCATCCCAGTTTTATGATGAAGTCAACAAGCAGCATCCTACAAATATTGCACCTTCTCAATTTCATGATAAAGTCAATTTCCAGCGTTCTGCTAGCTTTCAATCATCACCGCAGTTCCATGATAGAGTCAACGACCAGCATTCTGCTAACATTCCACCACCATCTCAATCTTACCCTAGTGCTGGCTACCCTTCCCATGATGCCCTTCCTCCACCTCCTTCCCATGATATCCATCGACCGCCTCCTTCCCATGATATCCATCCACCTCCTCCTTCCCATGATGTTCATCCACCTCCTCCTTCCCATGATCTCCATCTACCTCCTCCTCCCTCCCATGATATCCATCTACCTCCTCCTCCCTCCCATGACATCCATCTACCTCCTCCAACAAATAGACCAAACACTTCTGATTATCCTCAGCCATACCACCAGCAACCCTACCCACATGAACCCCAACAGCCTTCGCCACATGACTATCCTCCTCATGATATTACTAATTACACCTATCCTAATTTGAGTAATTTCCAATCCTATCCAAGTTTTACGGAAAGCAGCATTCCAGCAGTCTCGTCCCAGTATCCCTCTTACTATCAGGGCACTGATCCTTCCTACTCTCCCCAGTCAGCTCCTTCAACAACTAACTACCCATCAGCGGCCCAACACCAGGCGAGCCACAGAAATGGGACTGTTTCAGAACCTGCTCCTCCTGCCCCATCAAAGACTTTCCAGTATGATAGTAGCTACATGCCATCACCAGAGAAAATAGCAGAGGCACATAAGGCAGCCAGATTTGCAGTTGGAGCATTGGCATTTGATGATGTGTCAGTTGCGGTGGATCACTTAATAAAATCACTTGAGTTGTTGACGAACCCATCAGCTGGGGTCGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

367

Amino Acids

40.02

Weight (kDa)

5.92

Isoelectric Point (pI)

79.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vta1_C	PF18097	322 - 359	1.2e-09	Vta1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	916
AccB7I	CCANNNNNTGG	1 cut(s)	1088
AciI	CCGC	5 cut(s)	107, 320, 449, 863, 1040
AclWI	GGATC	3 cut(s)	200, 806, 1053
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	8 cut(s)	95, 106, 107, 192, 392, 862, 874, 1088
AgsI	TTSAA	2 cut(s)	311, 843
AhlI	ACTAGT	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	190, 873
AluBI	AGCT	8 cut(s)	16, 41, 68, 182, 306, 836, 951, 1088
AluI	AGCT	8 cut(s)	16, 41, 68, 182, 306, 836, 951, 1088
Alw26I	GTCTC	1 cut(s)	781
AlwI	GGATC	3 cut(s)	200, 806, 1053
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	4 cut(s)	97, 164, 194, 864
ApeKI	GCWGC	7 cut(s)	13, 38, 50, 179, 241, 762, 992
AspS9I	GGNCC	4 cut(s)	98, 164, 194, 865
AsuHPI	GGTGA	3 cut(s)	122, 309, 954
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	133
AxyI	CCTNAGG	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	809
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	7 cut(s)	25, 50, 62, 191, 253, 774, 1004
BciT130I	CCWGG	2 cut(s)	192, 875
BciVI	GTATCC	1 cut(s)	798
BcoDI	GTCTC	1 cut(s)	781
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	3 cut(s)	144, 303, 387
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	916
BfuI	GTATCC	1 cut(s)	798
BisI	GCNGC	8 cut(s)	14, 39, 51, 180, 242, 763, 864, 993
BlsI	GCNGC	8 cut(s)	15, 40, 52, 181, 243, 764, 865, 994
Bme1390I	CCNGG	2 cut(s)	192, 875
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	98, 164, 194, 865
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	192, 875
BmrI	ACTGGG	3 cut(s)	211, 778, 823
BmsI	GCATC	2 cut(s)	253, 400
BmtI	GCTAGC	1 cut(s)	306
BmuI	ACTGGG	3 cut(s)	211, 778, 823
Bpu10I	CCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	38, 1085
BsaBI	GATNNNNATC	6 cut(s)	117, 441, 468, 495, 522, 552
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	8 cut(s)	95, 106, 107, 192, 392, 862, 874, 1088
Bse1I	ACTGG	5 cut(s)	186, 217, 784, 829, 937
Bse21I	CCTNAGG	1 cut(s)	90
Bse8I	GATNNNNATC	6 cut(s)	117, 441, 468, 495, 522, 552
BseBI	CCWGG	2 cut(s)	192, 875
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	5 cut(s)	212, 244, 469, 496, 579
BseJI	GATNNNNATC	6 cut(s)	117, 441, 468, 495, 522, 552
BseLI	CCNNNNNNNGG	8 cut(s)	95, 106, 107, 192, 392, 862, 874, 1088
BseMII	CTCAG	2 cut(s)	104, 641
BseNI	ACTGG	5 cut(s)	186, 217, 784, 829, 937
BseRI	GAGGAG	9 cut(s)	468, 495, 522, 525, 552, 555, 582, 681, 903
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	7 cut(s)	25, 50, 62, 191, 253, 774, 1004
BseYI	CCCAGC	1 cut(s)	1088
Bsh1285I	CGRYCG	1 cut(s)	449
BshFI	GGCC	4 cut(s)	99, 166, 196, 866
BsiEI	CGRYCG	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	133
BslFI	GGGAC	2 cut(s)	766, 907
BslI	CCNNNNNNNGG	8 cut(s)	95, 106, 107, 192, 392, 862, 874, 1088
BsmAI	GTCTC	1 cut(s)	781
BsmFI	GGGAC	2 cut(s)	766, 907
BsmI	GAATGC	2 cut(s)	349, 765
BsnI	GGCC	4 cut(s)	99, 166, 196, 866
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
BspACI	CCGC	5 cut(s)	107, 320, 449, 863, 1040
BspANI	GGCC	4 cut(s)	99, 166, 196, 866
BspCNI	CTCAG	2 cut(s)	103, 640
BspHI	TCATGA	2 cut(s)	274, 694
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	916
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	200, 806, 1053
BsrI	ACTGG	5 cut(s)	186, 217, 784, 829, 937
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
Bst2UI	CCWGG	2 cut(s)	192, 875
Bst4CI	ACNGT	2 cut(s)	201, 898
BstC8I	GCNNGC	4 cut(s)	97, 304, 394, 880
BstDEI	CTNAG	2 cut(s)	90, 627
BstF5I	GGATG	5 cut(s)	212, 244, 469, 496, 579
BstKTI	GATC	7 cut(s)	6, 121, 160, 208, 520, 814, 1048
BstMAI	GTCTC	1 cut(s)	781
BstMBI	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 47, 917, 989, 1001, 1010
BstNI	CCWGG	2 cut(s)	192, 875
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	2 cut(s)	190, 873
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	7 cut(s)	25, 50, 62, 191, 253, 774, 1004
BstXI	CCANNNNNNTGG	1 cut(s)	890
Bsu36I	CCTNAGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	798
BsuRI	GGCC	4 cut(s)	99, 166, 196, 866
BtsCI	GGATG	5 cut(s)	212, 244, 469, 496, 579
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	1 cut(s)	916
Cac8I	GCNNGC	4 cut(s)	97, 304, 394, 880
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	2 cut(s)	274, 694
Cfr13I	GGNCC	4 cut(s)	98, 164, 194, 865
Csp6I	GTAC	1 cut(s)	138
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	90, 627
DpnI	GATC	7 cut(s)	5, 120, 159, 207, 519, 813, 1047
DpnII	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
Eco32I	GATATC	3 cut(s)	439, 466, 550
Eco81I	CCTNAGG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	190, 873
EcoRV	GATATC	3 cut(s)	439, 466, 550
FaqI	GGGAC	2 cut(s)	766, 907
FauI	CCCGC	1 cut(s)	100
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	8 cut(s)	14, 39, 51, 180, 242, 763, 864, 993
FokI	GGATG	5 cut(s)	199, 231, 456, 483, 566
Fsp4HI	GCNGC	8 cut(s)	14, 39, 51, 180, 242, 763, 864, 993
FspBI	CTAG	3 cut(s)	144, 303, 387
GluI	GCNGC	8 cut(s)	14, 39, 51, 180, 242, 763, 864, 993
GsaI	CCCAGC	1 cut(s)	1092
HaeIII	GGCC	4 cut(s)	99, 166, 196, 866
HincII	GTYRAC	3 cut(s)	235, 340, 1074
HindII	GTYRAC	3 cut(s)	235, 340, 1074
HinfI	GANTC	1 cut(s)	336
HphI	GGTGA	3 cut(s)	122, 309, 954
Hpy166II	GTNNAC	3 cut(s)	235, 340, 1074
Hpy188I	TCNGA	3 cut(s)	205, 619, 904
Hpy188III	TCNNGA	2 cut(s)	275, 695
Hpy8I	GTNNAC	3 cut(s)	235, 340, 1074
HpyCH4III	ACNGT	2 cut(s)	201, 898
HpyCH4V	TGCA	5 cut(s)	13, 38, 179, 260, 1004
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 47, 917, 989, 1001, 1010
HpyF3I	CTNAG	2 cut(s)	90, 627
Kzo9I	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
LmnI	GCTCC	3 cut(s)	841, 916, 1010
Lsp1109I	GCAGC	7 cut(s)	25, 50, 62, 191, 253, 774, 1004
LweI	GCATC	2 cut(s)	253, 400
MaeI	CTAG	3 cut(s)	144, 303, 387
MalI	GATC	7 cut(s)	5, 120, 159, 207, 519, 813, 1047
MboI	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	5 cut(s)	269, 286, 706, 721, 730
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	2 cut(s)	620, 988
MseI	TTAA	1 cut(s)	1052
MslI	CAYNNNNRTG	1 cut(s)	888
MspA1I	CMGCKG	2 cut(s)	863, 1088
MspR9I	CCNGG	2 cut(s)	192, 875
Mva1269I	GAATGC	2 cut(s)	349, 765
MvaI	CCWGG	2 cut(s)	192, 875
MwoI	GCNNNNNNNGC	6 cut(s)	19, 47, 917, 989, 1001, 1010
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
NheI	GCTAGC	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	958
PaeR7I	CTCGAG	1 cut(s)	133
PagI	TCATGA	2 cut(s)	274, 694
PctI	GAATGC	2 cut(s)	349, 765
PflMI	CCANNNNNTGG	1 cut(s)	1088
PkrI	GCNGC	8 cut(s)	15, 40, 52, 181, 243, 764, 865, 994
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	190, 873
PspFI	CCCAGC	1 cut(s)	1088
PspGI	CCWGG	2 cut(s)	190, 873
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	4 cut(s)	98, 164, 194, 865
PspXI	VCTCGAGB	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	888
SaqAI	TTAA	1 cut(s)	1052
SatI	GCNGC	8 cut(s)	14, 39, 51, 180, 242, 763, 864, 993
Sau3AI	GATC	7 cut(s)	3, 118, 157, 205, 517, 811, 1045
Sau96I	GGNCC	4 cut(s)	98, 164, 194, 865
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	2 cut(s)	192, 875
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	2 cut(s)	253, 400
SfcI	CTRYAG	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	3 cut(s)	17, 133, 1064
SmoI	CTYRAG	3 cut(s)	17, 133, 1064
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	5 cut(s)	269, 286, 706, 721, 730
SsiI	CCGC	5 cut(s)	107, 320, 449, 863, 1040
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	3 cut(s)	144, 303, 387
StyD4I	CCNGG	2 cut(s)	190, 873
TaaI	ACNGT	2 cut(s)	201, 898
TaqI	TCGA	2 cut(s)	134, 445
TasI	AATT	5 cut(s)	269, 286, 706, 721, 730
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	866
Tru1I	TTAA	1 cut(s)	1052
Tru9I	TTAA	1 cut(s)	1052
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	7 cut(s)	13, 38, 50, 179, 241, 762, 992
TspDTI	ATGAA	6 cut(s)	141, 201, 243, 263, 485, 672
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	814
Van91I	CCANNNNNTGG	1 cut(s)	1088
XceI	RCATGY	1 cut(s)	958
XhoI	CTCGAG	1 cut(s)	133
XspI	CTAG	3 cut(s)	144, 303, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.