Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Reverse (-)

2198956 .. 2201917

Gene Structure 2962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000581

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCGAGCGATAGCGAACCGGCGAAGCTTCTCTTACCCTACCTCCAACGAGCCGATGAGTTGCAGAAACACGAACCTCTCGTCGCTTATTACTGTCGATTATACGCAATGGAGCGAGGACTGAAGATTCCTCAGAACGAGCGCACCAAGACCACCAATTCCCTCCTGATTTCGCTCATGAAGCAGCTCGAAAAGGATAAGAAGTCACTGCAGTTGGGGCCTGAAGACAATCTGTATCTTGAGGGATTTGCTTTAAATGTTTTTGGGAAGGCAGACAAGCAAGATCGTGCTGGTCGAGCAGATTTGCTGTTAGGTTGCGTGTCTTGGGGAGGGATCCCCCCATTGTGTTTGTTAGGGATCCCCCCATTGTGTTTGTTAGCTTATGTTTCTTGGCAAGATTTTACAGTCCCTTTTGAAGATCTTGGGCCAAGCGAAACTCCAGCTACCAGTCCTGGGCCACGGTCCGATCCTTCATCCCAGTTTTATGATGAAGTCAACAAGCAGCATTCTACAAATATTGCACCTTCTCAATTTCATGATAAAGTCAGTTTCCAGCGTTCTTCTAGCTTTCAATCATCACCTCAGTTCCATGATAGAGTTAACGACCAGCATTCTGCTAACATTCCACCACCATCTCAATCTTACCCTAGTGCTGGCTACCCTTCCCATGATGTCCTTCCACCACCTCCTTCCCATGATATCCATCGACCGCCTCCTTCCCATGATGTTCATCTACCTCCTCCCTCCCATGATGTGCATCCACCTCCTCCCTCCCATGATCTCCATCTACCTCCTCCTCCATCCCATGATATCCATCTACCTCCTCCTCCCTCCCATGACATCCATCTACCTCCTCCAACAAATAGACCAAACACTTCTGATTATCCTCAGCCATACCATCAGCAACCCTACCCACATGAACCCCAACAGCCTTCGCCACATGACTATCCTCCTCATGATATTACTAATTACACCTATCCTAATTTGAGTAATTTCCAATCCTATCCAAGTTTTACGGAAAGCAGCATTCCAGCAGTCTCGTCCCAGTATCCCTCTTACTATCAGGGCACTGATCCTTCCTACTCTCCCCAGTCAGCTCCTTCAACAACTAACTACCCATCAGCGGCCCAACACCAGGTGAGCCACAGAAATGGGACTGCTTCAGAACCTGCTCCTCCTGCCCCATCAAAGACTTTCCAGTATGATAGTAGCTACATGCCATCACCAGAGAAAATAGCAGAGGCACATAAGGCAGCCAGATTTGCAGTTGGAGCATTGGCATTTGATGATGTGTCAGTTGCGGTGGATCACTTAATAAAATCACTTGAGTTGTTGACGAACCCATCAGCTGGGGTCGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

455

Amino Acids

50.11

Weight (kDa)

5.85

Isoelectric Point (pI)

70.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vta1	PF04652	12 - 101	3.3e-25	Vta1 like
Vta1_C	PF18097	409 - 446	1.6e-09	Vta1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1177
AccB7I	CCANNNNNTGG	1 cut(s)	1349
AciI	CCGC	3 cut(s)	710, 1124, 1301
AclWI	GGATC	7 cut(s)	328, 341, 352, 365, 461, 1067, 1314
AcuI	CTGAAG	3 cut(s)	143, 243, 1146
AdeI	CACNNNGTG	1 cut(s)	1138
AfiI	CCNNNNNNNGG	5 cut(s)	453, 653, 1123, 1135, 1349
AgsI	TTSAA	3 cut(s)	416, 572, 1104
AjnI	CCWGG	2 cut(s)	451, 1134
AluBI	AGCT	8 cut(s)	28, 187, 380, 443, 567, 1097, 1212, 1349
AluI	AGCT	8 cut(s)	28, 187, 380, 443, 567, 1097, 1212, 1349
Alw26I	GTCTC	1 cut(s)	1042
AlwI	GGATC	7 cut(s)	328, 341, 352, 365, 461, 1067, 1314
AlwNI	CAGNNNCTG	1 cut(s)	1169
AoxI	GGCC	4 cut(s)	218, 425, 455, 1125
ApeKI	GCWGC	4 cut(s)	184, 502, 1023, 1253
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	5 cut(s)	218, 425, 455, 462, 1126
AsuHPI	GGTGA	3 cut(s)	570, 1150, 1215
AvaII	GGWCC	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	1070
BamHI	GGATCC	2 cut(s)	333, 357
BbsI	GAAGAC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	4 cut(s)	196, 514, 1035, 1265
BciT130I	CCWGG	2 cut(s)	453, 1136
BciVI	GTATCC	1 cut(s)	1059
BcoDI	GTCTC	1 cut(s)	1042
BfaI	CTAG	2 cut(s)	564, 648
BfmI	CTRYAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	1177
BfuI	GTATCC	1 cut(s)	1059
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	5 cut(s)	185, 503, 1024, 1125, 1254
BlsI	GCNGC	5 cut(s)	186, 504, 1025, 1126, 1255
Bme1390I	CCNGG	2 cut(s)	453, 1136
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	5 cut(s)	218, 425, 455, 462, 1126
BmiI	GGNNCC	3 cut(s)	219, 335, 359
BmrFI	CCNGG	2 cut(s)	453, 1136
BmrI	ACTGGG	3 cut(s)	472, 1039, 1084
BmsI	GCATC	1 cut(s)	766
BmuI	ACTGGG	3 cut(s)	472, 1039, 1084
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	260, 1346
BsaBI	GATNNNNATC	5 cut(s)	702, 729, 756, 783, 813
BsaJI	CCNNGG	2 cut(s)	452, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	5 cut(s)	453, 653, 1123, 1135, 1349
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	5 cut(s)	447, 478, 1045, 1090, 1198
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	5 cut(s)	702, 729, 756, 783, 813
BseBI	CCWGG	2 cut(s)	453, 1136
BseDI	CCNNGG	2 cut(s)	452, 458
BseGI	GGATG	4 cut(s)	473, 757, 800, 840
BseJI	GATNNNNATC	5 cut(s)	702, 729, 756, 783, 813
BseLI	CCNNNNNNNGG	5 cut(s)	453, 653, 1123, 1135, 1349
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	3 cut(s)	146, 596, 902
BseNI	ACTGG	5 cut(s)	447, 478, 1045, 1090, 1198
BseRI	GAGGAG	9 cut(s)	729, 756, 783, 786, 813, 816, 843, 942, 1164
BseSI	GKGCMC	1 cut(s)	1070
BseXI	GCAGC	4 cut(s)	196, 514, 1035, 1265
BseYI	CCCAGC	1 cut(s)	1349
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	4 cut(s)	220, 427, 457, 1127
BsiEI	CGRYCG	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	3 cut(s)	392, 1027, 1168
BslI	CCNNNNNNNGG	5 cut(s)	453, 653, 1123, 1135, 1349
BsmAI	GTCTC	1 cut(s)	1042
BsmFI	GGGAC	3 cut(s)	392, 1027, 1168
BsmI	GAATGC	3 cut(s)	505, 610, 1026
BsnI	GGCC	4 cut(s)	220, 427, 457, 1127
Bsp1286I	GDGCHC	1 cut(s)	1070
Bsp143I	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
BspACI	CCGC	3 cut(s)	710, 1124, 1301
BspANI	GGCC	4 cut(s)	220, 427, 457, 1127
BspCNI	CTCAG	3 cut(s)	145, 595, 901
BspHI	TCATGA	3 cut(s)	177, 535, 955
BspLI	GGNNCC	3 cut(s)	219, 335, 359
BspMAI	CTGCAG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	1177
BspPI	GGATC	7 cut(s)	328, 341, 352, 365, 461, 1067, 1314
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	5 cut(s)	447, 478, 1045, 1090, 1198
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	452, 458
BssMI	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
Bst2UI	CCWGG	2 cut(s)	453, 1136
Bst4CI	ACNGT	3 cut(s)	95, 406, 462
BstC8I	GCNNGC	2 cut(s)	7, 655
BstDEI	CTNAG	3 cut(s)	132, 582, 888
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	473, 757, 800, 840
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	8 cut(s)	286, 336, 360, 421, 469, 781, 1075, 1309
BstMAI	GTCTC	1 cut(s)	1042
BstMBI	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 217, 296, 1178, 1250, 1262, 1271
BstNI	CCWGG	2 cut(s)	453, 1136
BstNSI	RCATGY	1 cut(s)	1219
BstSCI	CCNGG	2 cut(s)	451, 1134
BstSFI	CTRYAG	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	1070
BstV1I	GCAGC	4 cut(s)	196, 514, 1035, 1265
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	3 cut(s)	333, 357, 418
BstXI	CCANNNNNNTGG	1 cut(s)	1151
BstYI	RGATCY	3 cut(s)	333, 357, 418
BsuI	GTATCC	1 cut(s)	1059
BsuRI	GGCC	4 cut(s)	220, 427, 457, 1127
BtgI	CCRYGG	1 cut(s)	458
BtsCI	GGATG	4 cut(s)	473, 757, 800, 840
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	206, 1068
BveI	ACCTGC	1 cut(s)	1177
Cac8I	GCNNGC	2 cut(s)	7, 655
CaiI	CAGNNNCTG	1 cut(s)	1169
CciI	TCATGA	3 cut(s)	177, 535, 955
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	5 cut(s)	218, 425, 455, 462, 1126
CpoI	CGGWCCG	1 cut(s)	462
CsiI	ACCWGGT	1 cut(s)	1134
CspI	CGGWCCG	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	132, 582, 888
DpnI	GATC	8 cut(s)	285, 335, 359, 420, 468, 780, 1074, 1308
DpnII	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
DraI	TTTAAA	1 cut(s)	255
DraIII	CACNNNGTG	1 cut(s)	1138
Eco32I	GATATC	2 cut(s)	700, 811
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	3 cut(s)	143, 243, 1146
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	451, 1134
EcoRV	GATATC	2 cut(s)	700, 811
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	3 cut(s)	392, 1027, 1168
Fnu4HI	GCNGC	5 cut(s)	185, 503, 1024, 1125, 1254
FokI	GGATG	4 cut(s)	460, 744, 787, 827
Fsp4HI	GCNGC	5 cut(s)	185, 503, 1024, 1125, 1254
FspBI	CTAG	2 cut(s)	564, 648
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	5 cut(s)	185, 503, 1024, 1125, 1254
GsaI	CCCAGC	1 cut(s)	1353
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	220, 427, 457, 1127
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	3 cut(s)	496, 601, 1335
HindII	GTYRAC	3 cut(s)	496, 601, 1335
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	127
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	570, 1150, 1215
Hpy166II	GTNNAC	3 cut(s)	496, 601, 1335
Hpy188I	TCNGA	4 cut(s)	135, 466, 880, 1165
Hpy188III	TCNNGA	5 cut(s)	166, 178, 239, 536, 956
Hpy8I	GTNNAC	3 cut(s)	496, 601, 1335
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	95, 406, 462
HpyCH4V	TGCA	5 cut(s)	64, 211, 521, 757, 1265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 217, 296, 1178, 1250, 1262, 1271
HpyF3I	CTNAG	3 cut(s)	132, 582, 888
HspAI	GCGC	1 cut(s)	142
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
LmnI	GCTCC	4 cut(s)	112, 1102, 1177, 1271
Lsp1109I	GCAGC	4 cut(s)	196, 514, 1035, 1265
LweI	GCATC	1 cut(s)	766
MabI	ACCWGGT	1 cut(s)	1134
MaeI	CTAG	2 cut(s)	564, 648
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	8 cut(s)	285, 335, 359, 420, 468, 780, 1074, 1308
MboI	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
MboII	GAAGA	4 cut(s)	136, 236, 428, 552
MflI	RGATCY	3 cut(s)	333, 357, 418
MhlI	GDGCHC	1 cut(s)	1070
MluCI	AATT	5 cut(s)	157, 530, 967, 982, 991
MmeI	TCCRAC	3 cut(s)	70, 881, 1249
MseI	TTAA	3 cut(s)	254, 600, 1313
MslI	CAYNNNNRTG	1 cut(s)	1149
MspA1I	CMGCKG	2 cut(s)	1124, 1349
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	453, 1136
Mva1269I	GAATGC	3 cut(s)	505, 610, 1026
MvaI	CCWGG	2 cut(s)	453, 1136
MwoI	GCNNNNNNNGC	7 cut(s)	181, 217, 296, 1178, 1250, 1262, 1271
NdeII	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
NlaIV	GGNNCC	3 cut(s)	219, 335, 359
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	1219
PagI	TCATGA	3 cut(s)	177, 535, 955
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 292
PctI	GAATGC	3 cut(s)	505, 610, 1026
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	1349
PkrI	GCNGC	5 cut(s)	186, 504, 1025, 1126, 1255
Psp6I	CCWGG	2 cut(s)	451, 1134
PspFI	CCCAGC	1 cut(s)	1349
PspGI	CCWGG	2 cut(s)	451, 1134
PspN4I	GGNNCC	3 cut(s)	219, 335, 359
PspPI	GGNCC	5 cut(s)	218, 425, 455, 462, 1126
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	1169
PsuI	RGATCY	3 cut(s)	333, 357, 418
PvuII	CAGCTG	1 cut(s)	1349
RseI	CAYNNNNRTG	1 cut(s)	1149
Rsr2I	CGGWCCG	1 cut(s)	462
RsrII	CGGWCCG	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	254, 600, 1313
SatI	GCNGC	5 cut(s)	185, 503, 1024, 1125, 1254
Sau3AI	GATC	8 cut(s)	283, 333, 357, 418, 466, 778, 1072, 1306
Sau96I	GGNCC	5 cut(s)	218, 425, 455, 462, 1126
ScrFI	CCNGG	2 cut(s)	453, 1136
SduI	GDGCHC	1 cut(s)	1070
SexAI	ACCWGGT	1 cut(s)	1134
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	1149
SmlI	CTYRAG	2 cut(s)	239, 1325
SmoI	CTYRAG	2 cut(s)	239, 1325
Sse9I	AATT	5 cut(s)	157, 530, 967, 982, 991
SsiI	CCGC	3 cut(s)	710, 1124, 1301
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	2 cut(s)	564, 648
StyD4I	CCNGG	2 cut(s)	451, 1134
TaaI	ACNGT	3 cut(s)	95, 406, 462
TaqI	TCGA	4 cut(s)	97, 189, 295, 706
TasI	AATT	5 cut(s)	157, 530, 967, 982, 991
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	254, 600, 1313
Tru9I	TTAA	3 cut(s)	254, 600, 1313
TscAI	CASTG	2 cut(s)	213, 1075
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	4 cut(s)	184, 502, 1023, 1253
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	6 cut(s)	194, 462, 504, 524, 719, 933
TspGWI	ACGGA	1 cut(s)	1031
TspRI	CASTG	2 cut(s)	213, 1075
Van91I	CCANNNNNTGG	1 cut(s)	1349
VpaK11BI	GGWCC	1 cut(s)	462
XceI	RCATGY	1 cut(s)	1219
XspI	CTAG	2 cut(s)	564, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.