pycom03g23320

Vacuolar protein sorting-associated protein VTA1 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
23179887 .. 23182626
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g23320.2

Sequence Viewer

Length: 1329 bp
ATGGCGAGCGACAACGAGCCGGCGAAGCTGCTGTTGCCGTACCTCCAGCGCGCCGACGAGTTGCAGAAACACGAGCCTCTCGTCGCTTATTACTGTCGATTATACGCAATGGAGCGAGGGTTGAAGATCCCACAGAGCGAGCGTACCAAGACCACAAATTCCCTCCTCGTTTCCCTCATGAAGCAGCTTGAAAAGGATAAGAAGTCACTGAAGTTGGGGCCTGAAGACAATCTGTACCTTGAGGGATTTGCCTTAAATGTTTTTGGCAAGGCAGACAAGCAAGATCGTGCTGGTCGAGCAGATTTGACTACTGCAAAAACATTCTATGCTGCAAGCATTTTCTTTGAGATTCTTAACCAATTCGGCGTGGTTCAGCCTGATCTTGAGCAGAAACAAAAGTATGCAGCTTGGAAAGCAGCAGATATAAGGAAGGCTTTGAAAGAAGGAAGAAAGCCTCAAGCGGGCCCCCCTGCTGGTGATGATGATCTCTCACTTCCATCAAGTGGAATGAGTGGTTCATATGATCTTGGTCCAAGCGATGCTGCAGTTACCAGTCCTGGATCACAATCTGATCCCTCGCCCCAGTTTTATGATGAAATTAACAGGCAGCATTCTATAAAAACTGCACCGCCGCAGTTTCAAGATCAGCATCCTACAAACATTGCACCTTCTGAGTTTCGTGATGATGCCAAATTCCAGCGTTCTACTAGCCTTCAGTCACCACCTAAGTTCCATGATGAAGTCAATGGCCAGCATTCTGCAAACAATGCGCCACCGCCACCTCAGTCTTACCCTACTGCTGGTTACTCTTCCCATGATTTTCATCCACCTCCTCCAACAAATAGACCAGAAACGTCTGATTTTTCTCAGCCATACCACCAGCAATCCTACTCGCACGAACCCCAACAGCCTTTGCCACCTAACTATCCTCCTCATGAATCTAATTACTCTTATCCTAATTTTCAATCTTATCCAAGTTTTACAGAAACCAATATTCCAGCAGTCTCATCCCACTATCCCTCTTATTATCAGGGCTCTGACCCTGCCTACTCTCCCCCGTCAGCTCCTCCGACAACAAACCACCCTTCAACTACCCAATATCAGACAAGCAACAGAAATGGAACTGTTTCAGAACCTGCTCCTCCTCCTGCCCCTGCCAAGACGTACCAGTATGACAGCAGCTACCAGCCATCACCTGAGAAAATTGCCGAGGCACATAAGGCTGCAAGATTTGCAGTTGGAGCGTTGGCATTTGATGACGTGCCAGTTGCAGTAGATCACTTGATAAAATCGCTTGAAATGTTGACAAATCCATCAGCTGGTCGGTAA

Protein Analysis

443

Amino Acids

48.84

Weight (kDa)

5.87

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1144
AccB7I CCANNNNNTGG 2 cut(s) 503, 1319
AccII CGCG 1 cut(s) 51
AciI CCGC 4 cut(s) 461, 629, 632, 776
AclWI GGATC 3 cut(s) 121, 566, 568
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 2 cut(s) 157, 692
AcuI CTGAAG 3 cut(s) 230, 243, 698
AfaI GTAC 4 cut(s) 41, 145, 236, 1166
AfiI CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
AgsI TTSAA 7 cut(s) 124, 191, 439, 641, 965, 1089, 1298
AjiI CACGTC 1 cut(s) 1261
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 6 cut(s) 28, 187, 407, 1064, 1182, 1319
AluI AGCT 6 cut(s) 28, 187, 407, 1064, 1182, 1319
Alw26I GTCTC 1 cut(s) 1009
AlwI GGATC 3 cut(s) 121, 566, 568
AlwNI CAGNNNCTG 1 cut(s) 1136
AoxI GGCC 3 cut(s) 218, 463, 748
ApaI GGGCCC 1 cut(s) 467
ApeKI GCWGC 9 cut(s) 28, 184, 329, 404, 416, 542, 607, 1179, 1223
ApoI RAATTY 2 cut(s) 157, 692
Asp700I GAANNNNTTC 1 cut(s) 1126
AspLEI GCGC 3 cut(s) 51, 53, 772
AspS9I GGNCC 4 cut(s) 218, 463, 464, 530
AsuHPI GGTGA 3 cut(s) 488, 711, 1185
AvaII GGWCC 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 750
BanII GRGCYC 2 cut(s) 467, 1037
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 9 cut(s) 15, 196, 316, 416, 428, 529, 619, 1191, 1210
BccI CCATC 3 cut(s) 505, 1198, 1321
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 1009
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 1144
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 530
BmgBI CACGTC 1 cut(s) 1261
BmgT120I GGNCC 4 cut(s) 218, 463, 464, 530
BmiI GGNNCC 3 cut(s) 219, 465, 466
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 3 cut(s) 529, 658, 676
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 3 cut(s) 260, 404, 441
BsaBI GATNNNNATC 4 cut(s) 483, 565, 648, 822
BsaJI CCNNGG 1 cut(s) 1209
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 4 cut(s) 552, 583, 1168, 1265
Bse3DI GCAATG 2 cut(s) 114, 660
Bse8I GATNNNNATC 4 cut(s) 483, 565, 648, 822
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 1209
BseGI GGATG 3 cut(s) 649, 823, 1007
BseJI GATNNNNATC 4 cut(s) 483, 565, 648, 822
BseLI CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
BseMI GCAATG 2 cut(s) 114, 660
BseMII CTCAG 4 cut(s) 663, 797, 881, 1188
BseNI ACTGG 4 cut(s) 552, 583, 1168, 1265
BsePI GCGCGC 1 cut(s) 49
BseRI GAGGAG 6 cut(s) 155, 822, 921, 1056, 1131, 1134
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 9 cut(s) 15, 196, 316, 416, 428, 529, 619, 1191, 1210
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 220, 465, 750
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 5 cut(s) 461, 473, 503, 800, 1319
BsmAI GTCTC 1 cut(s) 1009
BsmI GAATGC 2 cut(s) 610, 754
BsnI GGCC 3 cut(s) 220, 465, 750
Bsp120I GGGCCC 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 467, 1037
Bsp143I GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
BspACI CCGC 4 cut(s) 461, 629, 632, 776
BspANI GGCC 3 cut(s) 220, 465, 750
BspCNI CTCAG 4 cut(s) 664, 796, 880, 1189
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 2 cut(s) 177, 934
BspLI GGNNCC 3 cut(s) 219, 465, 466
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 1144
BspPI GGATC 3 cut(s) 121, 566, 568
BsrDI GCAATG 2 cut(s) 114, 660
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 4 cut(s) 552, 583, 1168, 1265
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 1209
BssHII GCGCGC 1 cut(s) 49
BssMI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 95, 1126
Bst6I CTCTTC 1 cut(s) 814
BstAPI GCANNNNNTGC 2 cut(s) 767, 1232
BstC8I GCNNGC 7 cut(s) 7, 21, 51, 140, 334, 463, 752
BstDEI CTNAG 5 cut(s) 672, 726, 783, 867, 1197
BstF5I GGATG 3 cut(s) 649, 823, 1007
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 3 cut(s) 51, 53, 772
BstKTI GATC 9 cut(s) 129, 286, 382, 487, 526, 563, 574, 646, 1279
BstMAI GTCTC 1 cut(s) 1009
BstMBI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
BstMWI GCNNNNNNNGC 8 cut(s) 25, 34, 296, 413, 767, 1220, 1232, 1241
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 467
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 9 cut(s) 15, 196, 316, 416, 428, 529, 619, 1191, 1210
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 3 cut(s) 220, 465, 750
BtgZI GCGATG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 1261
BtsCI GGATG 3 cut(s) 649, 823, 1007
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 1144
Cac8I GCNNGC 7 cut(s) 7, 21, 51, 140, 334, 463, 752
CaiI CAGNNNCTG 1 cut(s) 1136
CciI TCATGA 2 cut(s) 177, 934
CfoI GCGC 3 cut(s) 51, 53, 772
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 4 cut(s) 218, 463, 464, 530
Csp6I GTAC 4 cut(s) 40, 144, 235, 1165
CviAII CATG 4 cut(s) 178, 734, 815, 935
CviQI GTAC 4 cut(s) 40, 144, 235, 1165
DdeI CTNAG 5 cut(s) 672, 726, 783, 867, 1197
DpnI GATC 9 cut(s) 128, 285, 381, 486, 525, 562, 573, 645, 1278
DpnII GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Eco24I GRGCYC 2 cut(s) 467, 1037
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 3 cut(s) 230, 243, 698
EcoO109I RGGNCCY 2 cut(s) 218, 464
EcoRII CCWGG 1 cut(s) 556
EcoT38I GRGCYC 2 cut(s) 467, 1037
FaeI CATG 4 cut(s) 181, 737, 818, 938
FalI AAGNNNNNCTT 2 cut(s) 418, 450
FatI CATG 4 cut(s) 177, 733, 814, 934
FauI CCCGC 1 cut(s) 454
FauNDI CATATG 1 cut(s) 520
FokI GGATG 3 cut(s) 636, 810, 994
FriOI GRGCYC 2 cut(s) 467, 1037
FspBI CTAG 1 cut(s) 708
GlaI GCGC 3 cut(s) 50, 52, 771
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 3 cut(s) 220, 465, 750
HapII CCGG 1 cut(s) 20
HhaI GCGC 3 cut(s) 51, 53, 772
Hin1II CATG 4 cut(s) 181, 737, 818, 938
Hin6I GCGC 3 cut(s) 49, 51, 770
HinP1I GCGC 3 cut(s) 49, 51, 770
HincII GTYRAC 1 cut(s) 1305
HindII GTYRAC 1 cut(s) 1305
HinfI GANTC 2 cut(s) 349, 938
HpaII CCGG 1 cut(s) 20
HphI GGTGA 3 cut(s) 488, 711, 1185
Hpy166II GTNNAC 1 cut(s) 1305
Hpy188I TCNGA 7 cut(s) 571, 673, 859, 1039, 1071, 1104, 1132
Hpy188III TCNNGA 5 cut(s) 178, 383, 641, 680, 935
Hpy8I GTNNAC 1 cut(s) 1305
Hpy99I CGWCG 2 cut(s) 59, 86
HpyAV CCTTC 5 cut(s) 424, 437, 678, 722, 1095
HpyCH4III ACNGT 2 cut(s) 95, 1126
HpyCH4IV ACGT 3 cut(s) 854, 1163, 1260
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 34, 296, 413, 767, 1220, 1232, 1241
HpyF3I CTNAG 5 cut(s) 672, 726, 783, 867, 1197
HpySE526I ACGT 3 cut(s) 854, 1163, 1260
Hsp92II CATG 4 cut(s) 181, 737, 818, 938
HspAI GCGC 3 cut(s) 49, 51, 770
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
LmnI GCTCC 4 cut(s) 112, 1069, 1144, 1241
Lsp1109I GCAGC 9 cut(s) 15, 196, 316, 416, 428, 529, 619, 1191, 1210
LweI GCATC 3 cut(s) 529, 658, 676
MaeI CTAG 1 cut(s) 708
MaeII ACGT 3 cut(s) 854, 1163, 1260
MaeIII GTNAC 4 cut(s) 204, 547, 717, 803
MalI GATC 9 cut(s) 128, 285, 381, 486, 525, 562, 573, 645, 1278
MboI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
MboII GAAGA 4 cut(s) 136, 236, 459, 801
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 467, 1037
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 7 cut(s) 157, 359, 597, 692, 943, 958, 1203
MluNI TGGCCA 1 cut(s) 750
MmeI TCCRAC 3 cut(s) 860, 1094, 1219
Mox20I TGGCCA 1 cut(s) 750
MroNI GCCGGC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 1126
MscI TGGCCA 1 cut(s) 750
MseI TTAA 3 cut(s) 254, 354, 600
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 1319
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 558
Mva1269I GAATGC 2 cut(s) 610, 754
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 8 cut(s) 25, 34, 296, 413, 767, 1220, 1232, 1241
NaeI GCCGGC 1 cut(s) 21
NdeI CATATG 1 cut(s) 520
NdeII GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 4 cut(s) 181, 737, 818, 938
NlaIV GGNNCC 3 cut(s) 219, 465, 466
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 2 cut(s) 204, 717
PagI TCATGA 2 cut(s) 177, 934
PauI GCGCGC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 292
PctI GAATGC 2 cut(s) 610, 754
PdiI GCCGGC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 1126
PfeI GAWTC 2 cut(s) 349, 938
PflMI CCANNNNNTGG 2 cut(s) 503, 1319
PfoI TCCNGGA 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 219, 465, 466
PspOMI GGGCCC 1 cut(s) 463
PspPI GGNCC 4 cut(s) 218, 463, 464, 530
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 1136
PsuI RGATCY 1 cut(s) 126
PteI GCGCGC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 1319
RsaI GTAC 4 cut(s) 41, 145, 236, 1166
RsaNI GTAC 4 cut(s) 40, 144, 235, 1165
SaqAI TTAA 3 cut(s) 254, 354, 600
Sau3AI GATC 9 cut(s) 126, 283, 379, 484, 523, 560, 571, 643, 1276
Sau96I GGNCC 4 cut(s) 218, 463, 464, 530
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 2 cut(s) 467, 1037
SfaNI GCATC 3 cut(s) 529, 658, 676
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 1 cut(s) 530
SmlI CTYRAG 3 cut(s) 239, 383, 456
SmoI CTYRAG 3 cut(s) 239, 383, 456
Sse9I AATT 7 cut(s) 157, 359, 597, 692, 943, 958, 1203
SsiI CCGC 4 cut(s) 461, 629, 632, 776
SspI AATATT 1 cut(s) 994
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 95, 1126
TaiI ACGT 3 cut(s) 857, 1166, 1263
TaqI TCGA 2 cut(s) 97, 295
TasI AATT 7 cut(s) 157, 359, 597, 692, 943, 958, 1203
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 2 cut(s) 349, 938
Tru1I TTAA 3 cut(s) 254, 354, 600
Tru9I TTAA 3 cut(s) 254, 354, 600
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 204, 717
TseI GCWGC 9 cut(s) 28, 184, 329, 404, 416, 542, 607, 1179, 1223
Tsp45I GTSAC 2 cut(s) 204, 717
TspDTI ATGAA 6 cut(s) 194, 507, 609, 753, 812, 951
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 2 cut(s) 503, 1319
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 2 cut(s) 157, 692
XmnI GAANNNNTTC 1 cut(s) 1126
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.