Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368331.1

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 900

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

gataaaaagtcactgcagttggggcctgaagacaatctgtatcttgagggatttgctttaaatgtttttgggaaggcagacaagcaagatcgtgctggtcgagcagatttgaatactgctaaaaccttctatgctgcaagcattttctttgagattattaaccagtttggtgtgcttcaacctgatcttgagcagaaacagaagtatgcggcttggaaagcagcagatataaggaaagctgtcaaggaaggaaggaaacctcaggctggcccccctgctggtgatgatgatctttcagttccctcgagtacaactagtggttcatatgtatggttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

112

Amino Acids

12.33

Weight (kDa)

6.46

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	266, 278
AgsI	TTSAA	2 cut(s)	112, 179
AhlI	ACTAGT	1 cut(s)	314
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	2 cut(s)	23, 268
ApeKI	GCWGC	2 cut(s)	134, 221
AspS9I	GGNCC	2 cut(s)	23, 269
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	121, 233
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	3 cut(s)	135, 210, 222
BlsI	GCNGC	3 cut(s)	136, 211, 223
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	23, 269
BmiI	GGNNCC	2 cut(s)	24, 271
BpiI	GAAGAC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	65, 209
BsaBI	GATNNNNATC	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 278
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	266, 278
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	121, 233
BshFI	GGCC	2 cut(s)	25, 270
BsiHKCI	CYCGRG	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	266, 278
BsnI	GGCC	2 cut(s)	25, 270
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	88, 184, 289
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	2 cut(s)	25, 270
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	24, 271
BspMAI	CTGCAG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	88, 184, 289
BstC8I	GCNNGC	2 cut(s)	139, 268
BstDEI	CTNAG	1 cut(s)	261
BstKTI	GATC	3 cut(s)	91, 187, 292
BstMBI	GATC	3 cut(s)	88, 184, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 101, 218
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	121, 233
BstV2I	GAAGAC	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	25, 270
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	139, 268
Cfr13I	GGNCC	2 cut(s)	23, 269
Csp6I	GTAC	1 cut(s)	309
CviJI	RGCY	5 cut(s)	25, 212, 239, 266, 270
CviKI_1	RGCY	5 cut(s)	25, 212, 239, 266, 270
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	90, 186, 291
DpnII	GATC	3 cut(s)	88, 184, 289
DraI	TTTAAA	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	23
FaiI	YATR	6 cut(s)	132, 207, 230, 325, 327, 331
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	135, 210, 222
Fsp4HI	GCNGC	3 cut(s)	135, 210, 222
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	135, 210, 222
HaeIII	GGCC	2 cut(s)	25, 270
HphI	GGTGA	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	44, 188
HpyAV	CCTTC	4 cut(s)	67, 136, 242, 246
HpyCH4V	TGCA	2 cut(s)	16, 137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 101, 218
HpyF3I	CTNAG	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	88, 184, 289
LpnPI	CCDG	8 cut(s)	39, 81, 176, 195, 248, 252, 264, 288
Lsp1109I	GCAGC	2 cut(s)	121, 233
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	3 cut(s)	90, 186, 291
MboI	GATC	3 cut(s)	88, 184, 289
MboII	GAAGA	1 cut(s)	41
MnlI	CCTC	3 cut(s)	40, 270, 313
MseI	TTAA	2 cut(s)	59, 159
MslI	CAYNNNNRTG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	22, 101, 218
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	3 cut(s)	88, 184, 289
NlaIV	GGNNCC	2 cut(s)	24, 271
NmuCI	GTSAC	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	136, 211, 223
PspN4I	GGNNCC	2 cut(s)	24, 271
PspPI	GGNCC	2 cut(s)	23, 269
PspXI	VCTCGAGB	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	59, 159
SatI	GCNGC	3 cut(s)	135, 210, 222
Sau3AI	GATC	3 cut(s)	88, 184, 289
Sau96I	GGNCC	2 cut(s)	23, 269
SetI	ASST	4 cut(s)	128, 184, 241, 262
SfcI	CTRYAG	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	3 cut(s)	44, 188, 304
SmoI	CTYRAG	3 cut(s)	44, 188, 304
SpeI	ACTAGT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	315
TaqI	TCGA	2 cut(s)	100, 305
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	59, 159
Tru9I	TTAA	2 cut(s)	59, 159
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	2 cut(s)	134, 221
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	304
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.