AT4G26750

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
13475617 .. 13478523
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26750.1

Sequence Viewer

Length: 1266 bp
ATGTCGAACCCAAACGAACCAGCCAGGGCTCTTCTGCCTTACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGGCTATATGCAATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAATTCGATTCTCATGTCTCTCATTAATCAACTCGAAAAGGATAAAAAATCATTGACTCTGTCCCCAGATGACAATATGCATGTGGAGGGGTTTGCACTTAGTGTCTTTGCTAAGGCAGACAAGCAGGATCGTGCAGGAAGAGCAGACTTGGGCACTGCCAAAACTTTTTATGCTGCGAGCATCTTCTTTGAAATTCTGAGCCAGTTTGGTCCCGTACCTCCTGATATAGAGCAGAAACACAAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCCACTCCAGGTGATCCTGTGGATGATGATACTGATTTATCCATCCCATCAAGCGGTCCTAGTGGCTCCTATGATCACAGTGCAAGTGATACCAACACAACAAGTCATCATAGAACAGAGCTTGATCCACCCCATGACTCGAATGATGACTCCAGCCACCATCAATTCCCTGAAGTGCCACAACACCCTCTACCTCCCAGGTTTTATGACAATCCGACCAACGATTATCCCGCAGATGTCCCACCTCCACCACCGTCTTCTTACCCTTCCAACGATCATCTTCCCCCTCCCACAGGACCATCAGACTCCCCTTACCCGCATCCTTACAGTCATCAACCATACCACCAAGACCCGCCAAAACACATGCCGCCACCGCAAAACTACTCATCTCATGAGCCTTCTCCAAATTCTCTCCCTAATTTCCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTTCTCCCCACTACCCTTCTCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCACTCTGCACCTGCTCCTTCTTCCACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATATTGCTCCCGTGCTAGATCCTGCACCGAGTTCAGCTCAGAAGTACCATTACGATAGCAGCTACCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACTCAAGGCTGCTAGATTCGCTGTGGGAGCTTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTCAAGAAGTCACTTGAGTTGCTAACAAATCCATCGGCCGGTGCCGGTCACTGA

Protein Analysis

421

Amino Acids

46.22

Weight (kDa)

5.77

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vta1 PF04652 12 - 148 4.8e-47 Vta1 like
Vta1_C PF18097 376 - 413 2.4e-09 Vta1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 991
Acc36I ACCTGC 2 cut(s) 51, 991
AccB1I GGYRCC 1 cut(s) 1253
AciI CCGC 8 cut(s) 131, 507, 684, 770, 806, 821, 827, 971
AclWI GGATC 4 cut(s) 291, 461, 572, 1064
AcoI YGGCCR 1 cut(s) 1248
AcsI RAATTY 2 cut(s) 348, 859
AcuI CTGAAG 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 2 cut(s) 372, 1097
AfiI CCNNNNNNNGG 4 cut(s) 461, 506, 746, 1250
AgsI TTSAA 2 cut(s) 124, 347
AjnI CCWGG 4 cut(s) 23, 460, 650, 1120
AluBI AGCT 7 cut(s) 61, 574, 891, 1002, 1088, 1113, 1175
AluI AGCT 7 cut(s) 61, 574, 891, 1002, 1088, 1113, 1175
Alw26I GTCTC 2 cut(s) 177, 1198
AlwI GGATC 4 cut(s) 291, 461, 572, 1064
AlwNI CAGNNNCTG 1 cut(s) 1127
AoxI GGCC 2 cut(s) 1124, 1248
ApeKI GCWGC 7 cut(s) 61, 329, 404, 416, 903, 1110, 1154
ApoI RAATTY 2 cut(s) 348, 859
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 4 cut(s) 365, 509, 749, 1124
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 3 cut(s) 365, 509, 749
BaeGI GKGCMC 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 1030, 1063
BanI GGYRCC 1 cut(s) 1253
BanII GRGCYC 1 cut(s) 31
BarI GAAGNNNNNNTAC 2 cut(s) 1085, 1117
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 7 cut(s) 48, 316, 391, 403, 915, 1122, 1141
BccI CCATC 6 cut(s) 503, 508, 621, 760, 919, 1252
BciT130I CCWGG 4 cut(s) 25, 462, 652, 1122
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 177, 1198
BfaI CTAG 4 cut(s) 513, 888, 1067, 1158
BfmI CTRYAG 2 cut(s) 62, 1203
BfuAI ACCTGC 2 cut(s) 51, 991
BisI GCNGC 8 cut(s) 62, 330, 405, 417, 821, 904, 1111, 1155
BlsI GCNGC 8 cut(s) 63, 331, 406, 418, 822, 905, 1112, 1156
Bme1390I CCNGG 4 cut(s) 25, 462, 652, 1122
Bme18I GGWCC 3 cut(s) 365, 509, 749
BmgT120I GGNCC 4 cut(s) 365, 509, 749, 1124
BmiI GGNNCC 3 cut(s) 367, 520, 1255
BmrFI CCNGG 4 cut(s) 25, 462, 652, 1122
BmsI GCATC 2 cut(s) 345, 781
BpiI GAAGAC 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 1072, 1104
BpmI CTGGAG 2 cut(s) 444, 589
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 3 cut(s) 1133, 1199, 1247
BsaJI CCNNGG 3 cut(s) 24, 650, 1121
Bsc4I CCNNNNNNNGG 4 cut(s) 461, 506, 746, 1250
Bse118I RCCGGY 2 cut(s) 1250, 1256
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 4 cut(s) 25, 462, 652, 1122
BseDI CCNNGG 3 cut(s) 24, 650, 1121
BseGI GGATG 4 cut(s) 481, 495, 772, 911
BseLI CCNNNNNNNGG 4 cut(s) 461, 506, 746, 1250
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 344, 1103, 1119
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 4 cut(s) 997, 1005, 1008, 1011
BseSI GKGCMC 1 cut(s) 311
BseX3I CGGCCG 1 cut(s) 1248
BseXI GCAGC 7 cut(s) 48, 316, 391, 403, 915, 1122, 1141
BsgI GTGCAG 3 cut(s) 309, 963, 1059
Bsh1285I CGRYCG 1 cut(s) 1251
BshFI GGCC 2 cut(s) 1126, 1250
BshNI GGYRCC 1 cut(s) 1253
BsiEI CGRYCG 1 cut(s) 1251
BsiSI CCGG 2 cut(s) 1251, 1257
BslFI GGGAC 3 cut(s) 202, 351, 677
BslI CCNNNNNNNGG 4 cut(s) 461, 506, 746, 1250
BsmAI GTCTC 2 cut(s) 177, 1198
BsmFI GGGAC 3 cut(s) 202, 351, 677
BsnI GGCC 2 cut(s) 1126, 1250
Bsp1286I GDGCHC 2 cut(s) 31, 311
Bsp143I GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
BspACI CCGC 8 cut(s) 131, 507, 684, 770, 806, 821, 827, 971
BspANI GGCC 2 cut(s) 1126, 1250
BspCNI CTCAG 3 cut(s) 345, 1102, 1120
BspHI TCATGA 1 cut(s) 844
BspLI GGNNCC 3 cut(s) 367, 520, 1255
BspMAI CTGCAG 1 cut(s) 66
BspMI ACCTGC 2 cut(s) 51, 991
BspPI GGATC 4 cut(s) 291, 461, 572, 1064
BspQI GCTCTTC 2 cut(s) 36, 289
BspT107I GGYRCC 1 cut(s) 1253
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 2 cut(s) 1250, 1256
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 2 cut(s) 1250, 1256
BssECI CCNNGG 3 cut(s) 24, 650, 1121
BssMI GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
Bst2UI CCWGG 4 cut(s) 25, 462, 652, 1122
Bst4CI ACNGT 4 cut(s) 95, 533, 708, 782
Bst6I CTCTTC 2 cut(s) 36, 289
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 6 cut(s) 147, 254, 267, 353, 1089, 1128
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 4 cut(s) 481, 495, 772, 911
BstKTI GATC 6 cut(s) 286, 469, 529, 580, 730, 1072
BstMAI GTCTC 2 cut(s) 177, 1198
BstMBI GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
BstMCI CGRYCG 1 cut(s) 1251
BstMWI GCNNNNNNNGC 8 cut(s) 43, 67, 296, 413, 826, 1151, 1163, 1172
BstNI CCWGG 4 cut(s) 25, 462, 652, 1122
BstNSI RCATGY 2 cut(s) 239, 820
BstSCI CCNGG 4 cut(s) 23, 460, 650, 1120
BstSFI CTRYAG 2 cut(s) 62, 1203
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 7 cut(s) 48, 316, 391, 403, 915, 1122, 1141
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 1069
BstYI RGATCY 1 cut(s) 1069
BstZI CGGCCG 1 cut(s) 1248
BsuRI GGCC 2 cut(s) 1126, 1250
BtsCI GGATG 4 cut(s) 481, 495, 772, 911
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 309, 538, 1261
BveI ACCTGC 2 cut(s) 51, 991
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 1127
CciI TCATGA 1 cut(s) 844
Cfr10I RCCGGY 2 cut(s) 1250, 1256
Cfr13I GGNCC 4 cut(s) 365, 509, 749, 1124
Csp6I GTAC 2 cut(s) 371, 1096
CviAII CATG 6 cut(s) 71, 169, 236, 587, 817, 845
CviQI GTAC 2 cut(s) 371, 1096
DdeI CTNAG 6 cut(s) 147, 254, 267, 353, 1089, 1128
DpnI GATC 6 cut(s) 285, 468, 528, 579, 729, 1071
DpnII GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
DraIII CACNNNGTG 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 1248
EagI CGGCCG 1 cut(s) 1248
Eam1104I CTCTTC 2 cut(s) 36, 289
EarI CTCTTC 2 cut(s) 36, 289
EclXI CGGCCG 1 cut(s) 1248
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 3 cut(s) 365, 509, 749
Eco52I CGGCCG 1 cut(s) 1248
Eco57I CTGAAG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 1124
EcoRII CCWGG 4 cut(s) 23, 460, 650, 1120
EcoT22I ATGCAT 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 6 cut(s) 74, 172, 239, 590, 820, 848
FaqI GGGAC 3 cut(s) 202, 351, 677
FatI CATG 6 cut(s) 70, 168, 235, 586, 816, 844
FauI CCCGC 3 cut(s) 691, 777, 813
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 8 cut(s) 62, 330, 405, 417, 821, 904, 1111, 1155
FokI GGATG 4 cut(s) 482, 488, 759, 898
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 8 cut(s) 62, 330, 405, 417, 821, 904, 1111, 1155
FspBI CTAG 4 cut(s) 513, 888, 1067, 1158
GluI GCNGC 8 cut(s) 62, 330, 405, 417, 821, 904, 1111, 1155
GsuI CTGGAG 2 cut(s) 444, 589
HaeIII GGCC 2 cut(s) 1126, 1250
HapII CCGG 2 cut(s) 1251, 1257
Hin1II CATG 6 cut(s) 74, 172, 239, 590, 820, 848
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 7 cut(s) 127, 163, 211, 590, 602, 758, 1161
HpaII CCGG 2 cut(s) 1251, 1257
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 4 cut(s) 354, 669, 757, 1092
Hpy188III TCNNGA 4 cut(s) 377, 845, 1195, 1216
HpyAV CCTTC 8 cut(s) 406, 437, 441, 729, 861, 942, 999, 1126
HpyCH4III ACNGT 4 cut(s) 95, 533, 708, 782
HpyCH4IV ACGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 8 cut(s) 43, 67, 296, 413, 826, 1151, 1163, 1172
HpyF3I CTNAG 6 cut(s) 147, 254, 267, 353, 1089, 1128
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 6 cut(s) 74, 172, 239, 590, 820, 848
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
LguI GCTCTTC 2 cut(s) 36, 289
LmnI GCTCC 5 cut(s) 524, 991, 1018, 1063, 1172
Lsp1109I GCAGC 7 cut(s) 48, 316, 391, 403, 915, 1122, 1141
LweI GCATC 2 cut(s) 345, 781
MaeI CTAG 4 cut(s) 513, 888, 1067, 1158
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 1221, 1259
MalI GATC 6 cut(s) 285, 468, 528, 579, 729, 1071
MboI GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
MboII GAAGA 8 cut(s) 23, 136, 306, 331, 702, 725, 957, 984
MflI RGATCY 1 cut(s) 1069
MhlI GDGCHC 2 cut(s) 31, 311
MluCI AATT 5 cut(s) 157, 348, 617, 859, 871
MlyI GAGTC 4 cut(s) 205, 584, 596, 752
MmeI TCCRAC 2 cut(s) 692, 747
Mph1103I ATGCAT 1 cut(s) 237
MseI TTAA 2 cut(s) 180, 438
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 2 cut(s) 1251, 1257
MspR9I CCNGG 4 cut(s) 25, 462, 652, 1122
MvaI CCWGG 4 cut(s) 25, 462, 652, 1122
MwoI GCNNNNNNNGC 8 cut(s) 43, 67, 296, 413, 826, 1151, 1163, 1172
NdeII GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
NlaIII CATG 6 cut(s) 74, 172, 239, 590, 820, 848
NlaIV GGNNCC 3 cut(s) 367, 520, 1255
NmuCI GTSAC 2 cut(s) 1221, 1259
NsiI ATGCAT 1 cut(s) 237
NspI RCATGY 2 cut(s) 239, 820
PagI TCATGA 1 cut(s) 844
PaqCI CACCTGC 1 cut(s) 991
PciSI GCTCTTC 2 cut(s) 36, 289
PfeI GAWTC 3 cut(s) 127, 163, 1161
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 8 cut(s) 63, 331, 406, 418, 822, 905, 1112, 1156
PleI GAGTC 4 cut(s) 205, 584, 596, 752
PpsI GAGTC 4 cut(s) 205, 584, 596, 752
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 4 cut(s) 23, 460, 650, 1120
PspGI CCWGG 4 cut(s) 23, 460, 650, 1120
PspN4I GGNNCC 3 cut(s) 367, 520, 1255
PspPI GGNCC 4 cut(s) 365, 509, 749, 1124
PstI CTGCAG 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 1 cut(s) 1069
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 2 cut(s) 372, 1097
RsaNI GTAC 2 cut(s) 371, 1096
RseI CAYNNNNRTG 1 cut(s) 399
SapI GCTCTTC 2 cut(s) 36, 289
SaqAI TTAA 2 cut(s) 180, 438
SatI GCNGC 8 cut(s) 62, 330, 405, 417, 821, 904, 1111, 1155
Sau3AI GATC 6 cut(s) 283, 466, 526, 577, 727, 1069
Sau96I GGNCC 4 cut(s) 365, 509, 749, 1124
SchI GAGTC 4 cut(s) 205, 584, 596, 752
ScrFI CCNGG 4 cut(s) 25, 462, 652, 1122
SduI GDGCHC 2 cut(s) 31, 311
SfaNI GCATC 2 cut(s) 345, 781
SfcI CTRYAG 2 cut(s) 62, 1203
SinI GGWCC 3 cut(s) 365, 509, 749
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 3 cut(s) 1148, 1214, 1226
SmoI CTYRAG 3 cut(s) 1148, 1214, 1226
Sse9I AATT 5 cut(s) 157, 348, 617, 859, 871
SsiI CCGC 8 cut(s) 131, 507, 684, 770, 806, 821, 827, 971
SspI AATATT 1 cut(s) 1054
SspMI CTAG 4 cut(s) 513, 888, 1067, 1158
StyD4I CCNGG 4 cut(s) 23, 460, 650, 1120
TaaI ACNGT 4 cut(s) 95, 533, 708, 782
TaiI ACGT 1 cut(s) 52
TaqI TCGA 5 cut(s) 5, 161, 189, 593, 1196
TasI AATT 5 cut(s) 157, 348, 617, 859, 871
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 3 cut(s) 127, 163, 1161
Tru1I TTAA 2 cut(s) 180, 438
Tru9I TTAA 2 cut(s) 180, 438
TscAI CASTG 2 cut(s) 316, 538
TseFI GTSAC 2 cut(s) 1221, 1259
TseI GCWGC 7 cut(s) 61, 329, 404, 416, 903, 1110, 1154
Tsp45I GTSAC 2 cut(s) 1221, 1259
TspDTI ATGAA 2 cut(s) 87, 1203
TspRI CASTG 2 cut(s) 316, 538
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 3 cut(s) 365, 509, 749
VspI ATTAAT 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 2 cut(s) 348, 859
XceI RCATGY 2 cut(s) 239, 820
XspI CTAG 4 cut(s) 513, 888, 1067, 1158
Zsp2I ATGCAT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.