Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8080026.1

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Reverse (-)

29 .. 583

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8080026.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atccatctacctcctcctccctcccatgacatccatctacctcctccaacaaatagaccaaacacttctgattatcctcagccataccaccagcaaccctacccacatgaaccccaacagccttcgccacatgactatcctcctcatgatattactaattacacctatcctaatttgagtaatttccaatcctatccaagttttacggaaagcagcattccagcagtctcgtcccagtatccctcttactatcaaggcactgatccttcctactttccccagtcagctccttcaacaactaactacccatcagcggcccaacaccaggcgagccacagaaatgggactgtttcagaacctgctcctcctgccccatcaaagactttccagtatgatagtagctacatgccatcaccagagaaaatagcagaggcgcataaggcagccagatttgcagttggagcattggcatttgatgatgtgtcagttgcggtggatcacttaataaaatcacttgagttgttgacgaacccatcagctggggtcggcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

184

Amino Acids

20.21

Weight (kDa)

5.8

Isoelectric Point (pI)

72.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	539
AciI	CCGC	2 cut(s)	314, 491
AclWI	GGATC	2 cut(s)	257, 504
AfiI	CCNNNNNNNGG	3 cut(s)	313, 325, 539
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	287, 402, 539
AluI	AGCT	3 cut(s)	287, 402, 539
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	257, 504
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	213, 443
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	225, 455
BccI	CCATC	6 cut(s)	12, 42, 316, 382, 418, 541
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	3 cut(s)	214, 315, 444
BlsI	GCNGC	3 cut(s)	215, 316, 445
Bme1390I	CCNGG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	326
BmrI	ACTGGG	2 cut(s)	229, 274
BmuI	ACTGGG	2 cut(s)	229, 274
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 325, 539
Bse1I	ACTGG	3 cut(s)	235, 280, 388
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	313, 325, 539
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	3 cut(s)	235, 280, 388
BseRI	GAGGAG	4 cut(s)	6, 33, 132, 354
BseXI	GCAGC	2 cut(s)	225, 455
BseYI	CCCAGC	1 cut(s)	539
BshFI	GGCC	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	217, 358
BslI	CCNNNNNNNGG	3 cut(s)	313, 325, 539
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	217, 358
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	262, 496
BspACI	CCGC	2 cut(s)	314, 491
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	257, 504
BsrI	ACTGG	3 cut(s)	235, 280, 388
BssMI	GATC	2 cut(s)	262, 496
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	265, 499
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	262, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 440, 452, 461
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	225, 455
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	316
CviAII	CATG	5 cut(s)	26, 107, 131, 146, 406
CviJI	RGCY	8 cut(s)	82, 121, 287, 317, 333, 402, 446, 539
CviKI_1	RGCY	8 cut(s)	82, 121, 287, 317, 333, 402, 446, 539
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	264, 498
DpnII	GATC	2 cut(s)	262, 496
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	5 cut(s)	29, 110, 134, 149, 409
FaiI	YATR	8 cut(s)	27, 85, 108, 132, 147, 393, 407, 438
FaqI	GGGAC	2 cut(s)	217, 358
FatI	CATG	5 cut(s)	25, 106, 130, 145, 405
Fnu4HI	GCNGC	3 cut(s)	214, 315, 444
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	214, 315, 444
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	3 cut(s)	214, 315, 444
GsaI	CCCAGC	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	29, 110, 134, 149, 409
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	2 cut(s)	70, 355
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	3 cut(s)	132, 276, 300
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 440, 452, 461
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	29, 110, 134, 149, 409
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	2 cut(s)	262, 496
LmnI	GCTCC	3 cut(s)	292, 367, 461
Lsp1109I	GCAGC	2 cut(s)	225, 455
MalI	GATC	2 cut(s)	264, 498
MboI	GATC	2 cut(s)	262, 496
MluCI	AATT	3 cut(s)	157, 172, 181
MmeI	TCCRAC	2 cut(s)	71, 439
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	2 cut(s)	314, 539
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	368, 440, 452, 461
NdeII	GATC	2 cut(s)	262, 496
NlaIII	CATG	5 cut(s)	29, 110, 134, 149, 409
NspI	RCATGY	1 cut(s)	409
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	216
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	215, 316, 445
Psp6I	CCWGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	3 cut(s)	214, 315, 444
Sau3AI	GATC	2 cut(s)	262, 496
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	7 cut(s)	13, 43, 167, 289, 361, 404, 541
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	157, 172, 181
SsiI	CCGC	2 cut(s)	314, 491
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	349
TasI	AATT	3 cut(s)	157, 172, 181
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	213, 443
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	539
XceI	RCATGY	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.