Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Forward (+)

28920807 .. 28923996

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39180.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCGAGCGATAACGAACCCGCGAAGCTGCTCTTACCGTACCTCCAACGAGCCGATGAGTTGCAGAAACACGAGCCTCTCGTCGCTTATTACTGTCGATTATACGCAATGGAGCGAGGGCTCAAGATTCCTCAGAACGAGCGCACCAAGACCACCAACTCCCTCCTGATTTCGCTGATGAAGCAGCTCGAAAAGGATAAGAAGTCGCTGGAGCTGGGGCCTGAAGACAATCTGTATCTTGAGGGGTTTGCCTTGAATGTTTTCGGGAAGGCAGACAAGCAGGATCGTGCTGGTCGAGCAGATTTGAATACTGCAAAAACATTCTATGCTGCAAGCATTTTCTTTGAGATTATTAACCAGTTTGGTGTGCTTCAGCCTGATCTTGAGCAGAAACAGAAGTATGCAGCATGGAAAGCAGCAGACATAAGGAAGGCTGTGAAAGAAGGAAGGAAGCCTCAAGCTGGCCCCCCTGCTGGTGATGATGATCTTTCAGTTCCCTCGCGGACAACTAGTGATTCATATGATCTTGGGCCAAGTGAAACTGCAGCTACCAGTCCTGGGCCACAGTCCGATTCTTCATCCCAGTTTTATGATGAAGTCAACAAGCAGCATCCTACAAATATTACACCTTCTCAATATCATGATAAAGTCAATTTCCAGCGTTCTGCTAGCTTTCAATCATCACCTCAGTTCCCTGATAGATTTAACGACCAGCATTCTGCTGACGTTCTACCATCATCTCAATCTTTCCCTAGTGCTGGCTACCCTTCCCATGATGGCCTTCCACCACCTCCTTCCCATGATATCCATCGACCACCTCCTTCCCATGATGTCCATTCACCTCCTCCTTCCCATGATGTCCATCCACCTCCTCCTTCCCATGATTTCCATCTACCTCCTCCTCCCTCTCATGATATCCATCTACCTCCTCCAACAAATAGACCAAACACTTCTGATTATCCTCAGCCATACCACCAGCAACCCCCCTACCCACATGATCCCCAACAGCTTTCGCCGCATGACTATCCTCCTCCTCATGATACTACTAATTACACCTATCCTAATTTAAGTAATTTCCAATCCTATCCAAGTTTTACAGAAAGCAACATTCCAGCAGTCTCGTCCCAGTATCCCTCGTATTATCAGGGCACTGATCCTTCCTACTCTTCCCCGTCAGCTCCTTCAACAACTAACTACCCATCAGCGGCCCAACACCAGGCGAGCCACAGAAATGGGACTGTTTCAGGACCTGCTCCTGTTGCCCCATCAAAGACTTACCATTATGATAGTAGCTACATGCCATCACCAGAGAAAATAGCAGAGGCGCATAAGGCAGCCAGGTTTGCAGTTGGAGCATTGGCATTTGATGATGTGTCAGTTGCTGTGGATCACTTAATAAAATCACTTGAGTTGTTGACGAAACCATCATCTGGGGTTAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

482

Amino Acids

53.14

Weight (kDa)

5.97

Isoelectric Point (pI)

67.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vta1	PF04652	20 - 98	4e-24	Vta1 like
Vta1_C	PF18097	386 - 423	1.5e-09	Vta1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1258
AccB7I	CCANNNNNTGG	1 cut(s)	1430
AccII	CGCG	2 cut(s)	23, 502
AciI	CCGC	4 cut(s)	21, 502, 1016, 1205
AclWI	GGATC	4 cut(s)	291, 992, 1148, 1395
AcuI	CTGAAG	2 cut(s)	243, 356
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1204, 1216, 1430
AgsI	TTSAA	4 cut(s)	256, 307, 677, 1185
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	3 cut(s)	556, 1215, 1337
AluBI	AGCT	9 cut(s)	28, 187, 214, 461, 548, 672, 1009, 1178, 1293
AluI	AGCT	9 cut(s)	28, 187, 214, 461, 548, 672, 1009, 1178, 1293
Alw26I	GTCTC	1 cut(s)	1123
AlwI	GGATC	4 cut(s)	291, 992, 1148, 1395
AlwNI	CAGNNNCTG	2 cut(s)	1250, 1382
AoxI	GGCC	6 cut(s)	218, 463, 530, 560, 778, 1206
ApeKI	GCWGC	8 cut(s)	28, 184, 329, 404, 416, 545, 607, 1334
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	144, 1327
AspS9I	GGNCC	6 cut(s)	218, 464, 530, 560, 1207, 1247
AsuHPI	GGTGA	4 cut(s)	488, 675, 831, 1296
AsuNHI	GCTAGC	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	1247
BaeGI	GKGCMC	1 cut(s)	1151
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	963
BbvI	GCAGC	8 cut(s)	15, 196, 316, 416, 428, 557, 619, 1346
BciT130I	CCWGG	3 cut(s)	558, 1217, 1339
BciVI	GTATCC	1 cut(s)	1140
BcoDI	GTCTC	1 cut(s)	1123
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	3 cut(s)	510, 669, 753
BfmI	CTRYAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	1258
BfuI	GTATCC	1 cut(s)	1140
Bme1390I	CCNGG	3 cut(s)	558, 1217, 1339
Bme18I	GGWCC	1 cut(s)	1247
BmgT120I	GGNCC	6 cut(s)	218, 464, 530, 560, 1207, 1247
BmiI	GGNNCC	2 cut(s)	219, 466
BmrFI	CCNGG	3 cut(s)	558, 1217, 1339
BmrI	ACTGGG	2 cut(s)	577, 1120
BmsI	GCATC	1 cut(s)	619
BmtI	GCTAGC	1 cut(s)	672
BmuI	ACTGGG	2 cut(s)	577, 1120
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	5 cut(s)	107, 260, 404, 441, 1427
BsaBI	GATNNNNATC	5 cut(s)	483, 807, 861, 888, 918
BsaJI	CCNNGG	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1204, 1216, 1430
Bse1I	ACTGG	4 cut(s)	358, 552, 583, 1126
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	5 cut(s)	483, 807, 861, 888, 918
BseBI	CCWGG	3 cut(s)	558, 1217, 1339
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	3 cut(s)	578, 610, 862
BseJI	GATNNNNATC	5 cut(s)	483, 807, 861, 888, 918
BseLI	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1204, 1216, 1430
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	3 cut(s)	146, 701, 977
BseNI	ACTGG	4 cut(s)	358, 552, 583, 1126
BseRI	GAGGAG	7 cut(s)	834, 861, 888, 891, 918, 1020, 1023
BseSI	GKGCMC	1 cut(s)	1151
BseXI	GCAGC	8 cut(s)	15, 196, 316, 416, 428, 557, 619, 1346
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	2 cut(s)	23, 502
BshFI	GGCC	6 cut(s)	220, 465, 532, 562, 780, 1208
BslFI	GGGAC	2 cut(s)	1108, 1249
BslI	CCNNNNNNNGG	7 cut(s)	461, 473, 558, 758, 1204, 1216, 1430
BsmAI	GTCTC	1 cut(s)	1123
BsmFI	GGGAC	2 cut(s)	1108, 1249
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	6 cut(s)	220, 465, 532, 562, 780, 1208
Bsp1286I	GDGCHC	2 cut(s)	123, 1151
Bsp143I	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
BspACI	CCGC	4 cut(s)	21, 502, 1016, 1205
BspANI	GGCC	6 cut(s)	220, 465, 532, 562, 780, 1208
BspCNI	CTCAG	3 cut(s)	145, 700, 976
BspFNI	CGCG	2 cut(s)	23, 502
BspHI	TCATGA	3 cut(s)	640, 910, 1036
BspLI	GGNNCC	2 cut(s)	219, 466
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	1258
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	4 cut(s)	291, 992, 1148, 1395
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	358, 552, 583, 1126
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	558, 1217, 1339
Bst4CI	ACNGT	4 cut(s)	39, 95, 567, 1240
Bst6I	CTCTTC	1 cut(s)	1171
BstC8I	GCNNGC	6 cut(s)	7, 334, 463, 670, 760, 1222
BstDEI	CTNAG	3 cut(s)	132, 687, 963
BstF5I	GGATG	3 cut(s)	578, 610, 862
BstFNI	CGCG	2 cut(s)	23, 502
BstHHI	GCGC	2 cut(s)	144, 1327
BstKTI	GATC	7 cut(s)	286, 382, 487, 526, 1000, 1156, 1390
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
BstMWI	GCNNNNNNNGC	8 cut(s)	181, 296, 413, 1015, 1259, 1331, 1343, 1352
BstNI	CCWGG	3 cut(s)	558, 1217, 1339
BstNSI	RCATGY	1 cut(s)	1300
BstSCI	CCNGG	3 cut(s)	556, 1215, 1337
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	1151
BstUI	CGCG	2 cut(s)	23, 502
BstV1I	GCAGC	8 cut(s)	15, 196, 316, 416, 428, 557, 619, 1346
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	1232
BsuI	GTATCC	1 cut(s)	1140
BsuRI	GGCC	6 cut(s)	220, 465, 532, 562, 780, 1208
BtsCI	GGATG	3 cut(s)	578, 610, 862
BtsIMutI	CAGTG	1 cut(s)	1149
BveI	ACCTGC	1 cut(s)	1258
Cac8I	GCNNGC	6 cut(s)	7, 334, 463, 670, 760, 1222
CaiI	CAGNNNCTG	2 cut(s)	1250, 1382
CciI	TCATGA	3 cut(s)	640, 910, 1036
CfoI	GCGC	2 cut(s)	144, 1327
Cfr13I	GGNCC	6 cut(s)	218, 464, 530, 560, 1207, 1247
Csp6I	GTAC	1 cut(s)	40
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	132, 687, 963
DpnI	GATC	7 cut(s)	285, 381, 486, 525, 999, 1155, 1389
DpnII	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
Eam1104I	CTCTTC	1 cut(s)	1171
EarI	CTCTTC	1 cut(s)	1171
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	2 cut(s)	805, 916
Eco47I	GGWCC	1 cut(s)	1247
Eco57I	CTGAAG	2 cut(s)	243, 356
EcoO109I	RGGNCCY	2 cut(s)	218, 1247
EcoRII	CCWGG	3 cut(s)	556, 1215, 1337
EcoRV	GATATC	2 cut(s)	805, 916
EcoT38I	GRGCYC	1 cut(s)	123
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	2 cut(s)	1108, 1249
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	520
FokI	GGATG	3 cut(s)	565, 597, 849
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	510, 669, 753
GlaI	GCGC	2 cut(s)	143, 1326
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	6 cut(s)	220, 465, 532, 562, 780, 1208
HhaI	GCGC	2 cut(s)	144, 1327
Hin6I	GCGC	2 cut(s)	142, 1325
HinP1I	GCGC	2 cut(s)	142, 1325
HincII	GTYRAC	2 cut(s)	601, 1416
HindII	GTYRAC	2 cut(s)	601, 1416
HinfI	GANTC	3 cut(s)	127, 515, 572
HphI	GGTGA	4 cut(s)	488, 675, 831, 1296
Hpy166II	GTNNAC	2 cut(s)	601, 1416
Hpy188I	TCNGA	3 cut(s)	135, 571, 955
Hpy188III	TCNNGA	9 cut(s)	124, 166, 239, 265, 383, 641, 911, 1037, 1245
Hpy8I	GTNNAC	2 cut(s)	601, 1416
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	4 cut(s)	39, 95, 567, 1240
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	6 cut(s)	64, 314, 332, 404, 545, 1346
HpyF10VI	GCNNNNNNNGC	8 cut(s)	181, 296, 413, 1015, 1259, 1331, 1343, 1352
HpyF3I	CTNAG	3 cut(s)	132, 687, 963
HpySE526I	ACGT	1 cut(s)	726
HspAI	GCGC	2 cut(s)	142, 1325
Kzo9I	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
LmnI	GCTCC	5 cut(s)	112, 211, 1183, 1258, 1352
Lsp1109I	GCAGC	8 cut(s)	15, 196, 316, 416, 428, 557, 619, 1346
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	3 cut(s)	510, 669, 753
MaeII	ACGT	1 cut(s)	726
MalI	GATC	7 cut(s)	285, 381, 486, 525, 999, 1155, 1389
MboI	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
MboII	GAAGA	3 cut(s)	236, 567, 1158
MhlI	GDGCHC	2 cut(s)	123, 1151
MluCI	AATT	4 cut(s)	652, 1048, 1063, 1072
MmeI	TCCRAC	3 cut(s)	70, 956, 1330
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	5 cut(s)	354, 705, 1067, 1394, 1437
MslI	CAYNNNNRTG	1 cut(s)	1230
MspA1I	CMGCKG	1 cut(s)	1205
MspR9I	CCNGG	3 cut(s)	558, 1217, 1339
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	3 cut(s)	558, 1217, 1339
MvnI	CGCG	2 cut(s)	23, 502
MwoI	GCNNNNNNNGC	8 cut(s)	181, 296, 413, 1015, 1259, 1331, 1343, 1352
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
NheI	GCTAGC	1 cut(s)	668
NlaIV	GGNNCC	2 cut(s)	219, 466
NspI	RCATGY	1 cut(s)	1300
PagI	TCATGA	3 cut(s)	640, 910, 1036
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 292
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	127, 515, 572
PflMI	CCANNNNNTGG	1 cut(s)	1430
PpuMI	RGGWCCY	1 cut(s)	1247
Psp5II	RGGWCCY	1 cut(s)	1247
Psp6I	CCWGG	3 cut(s)	556, 1215, 1337
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	3 cut(s)	556, 1215, 1337
PspN4I	GGNNCC	2 cut(s)	219, 466
PspPI	GGNCC	6 cut(s)	218, 464, 530, 560, 1207, 1247
PspPPI	RGGWCCY	1 cut(s)	1247
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	2 cut(s)	1250, 1382
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	1230
SaqAI	TTAA	5 cut(s)	354, 705, 1067, 1394, 1437
Sau3AI	GATC	7 cut(s)	283, 379, 484, 523, 997, 1153, 1387
Sau96I	GGNCC	6 cut(s)	218, 464, 530, 560, 1207, 1247
ScrFI	CCNGG	3 cut(s)	558, 1217, 1339
SduI	GDGCHC	2 cut(s)	123, 1151
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	1 cut(s)	1247
SmiMI	CAYNNNNRTG	1 cut(s)	1230
SmlI	CTYRAG	5 cut(s)	122, 239, 383, 456, 1406
SmoI	CTYRAG	5 cut(s)	122, 239, 383, 456, 1406
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	4 cut(s)	652, 1048, 1063, 1072
SsiI	CCGC	4 cut(s)	21, 502, 1016, 1205
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	3 cut(s)	510, 669, 753
StyD4I	CCNGG	3 cut(s)	556, 1215, 1337
TaaI	ACNGT	4 cut(s)	39, 95, 567, 1240
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	4 cut(s)	97, 189, 295, 811
TasI	AATT	4 cut(s)	652, 1048, 1063, 1072
TauI	GCSGC	2 cut(s)	1018, 1208
TfiI	GAWTC	3 cut(s)	127, 515, 572
Tru1I	TTAA	5 cut(s)	354, 705, 1067, 1394, 1437
Tru9I	TTAA	5 cut(s)	354, 705, 1067, 1394, 1437
TscAI	CASTG	1 cut(s)	1156
TseI	GCWGC	8 cut(s)	28, 184, 329, 404, 416, 545, 607, 1334
TspDTI	ATGAA	4 cut(s)	194, 507, 567, 609
TspRI	CASTG	1 cut(s)	1156
Van91I	CCANNNNNTGG	1 cut(s)	1430
VpaK11BI	GGWCC	1 cut(s)	1247
XceI	RCATGY	1 cut(s)	1300
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	3 cut(s)	510, 669, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.