Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030862.1

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Forward (+)

4862 .. 5200

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030862.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atggcgagcgatagcgaaccggcgaagctcctcttaccgtacctccaacgagccgatgagttgcagaaacacgagcctctcgtcgcttattactgtcgattatacgcaatggagcgagggctgaagattcctcagaacgagcgcaccaagaccaccaattccctcctgatttcgctcatgaagcagctcgaaaaggtctcttcttctcccataaccacttctctataccatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

78

Amino Acids

9.0

Weight (kDa)

8.79

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	41
AluBI	AGCT	2 cut(s)	28, 187
AluI	AGCT	2 cut(s)	28, 187
Alw26I	GTCTC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse118I	RCCGGY	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	39, 95
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	5 cut(s)	28, 53, 76, 121, 187
CviKI_1	RGCY	5 cut(s)	28, 53, 76, 121, 187
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	143
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	103, 179, 212, 226
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	185
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	166, 178
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	39, 95
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	33, 112
LpnPI	CCDG	2 cut(s)	33, 179
Lsp1109I	GCAGC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	136, 192, 195
MluCI	AATT	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	41, 53, 87, 110, 141, 173
MspI	CCGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	181
PagI	TCATGA	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	185
SetI	ASST	4 cut(s)	30, 45, 189, 198
Sse9I	AATT	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	39, 95
TaqI	TCGA	2 cut(s)	97, 189
TasI	AATT	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.