Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009452

Physical Location & Seq

Genomic Coordinates Forward (+)

22301206 .. 22304380

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G266900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCGAGCGATAACGAGCCCGCGAAGCTCCTCTTGCCGTACCTCCAACGTGCCGATGAGTTGCAGAAACACGAGCCTCTCGTCGCTTATTACTGTCGATTGTACGCAATGGAGCGAGGGCTGAAGATCCCTCAGAACGAGCGTACCAAGACCACCAATTCCCTCCTTATTTCCCTCATGAAGCAGCTTGAAAAGGATAAGAAGTCACTGCAGTTGGGGCCTGAAGACAATCTGTATCTTGAGGGATTTGCCTTAAATGTTTTTGGGAAGGCAGACAAGCAAGATCGTGCTGGTCGAGCAGATTTGAATACTGCAAAAACATTTTATGCTGCAAGTATTTTCTTTGAGATTATTAACCAGTTTGGCGTGCTTCAGCCTGATCTTGAGCAGAAACAAAAGTACGCAGCTTGGAAAGCAGCAGATATAAGGAAAGCTTTGAAAGAAGGAAGGAAGCCTGAAGCAGGCCCCCCTGCTGGAGATGATGATCTTTCAATTCCATCGAGTGGGATGAGTGGTTCATATGATCTTGGGCCAAGTGAAGCAGCAGTTATCAGTCCTGGACCACCATCTGATCCATCACCCCAGTTTTATGATGAAGTCAACAAGCAGCACTCAACAGACACTTTACCTCCTCAGTTTCATGATAATGCCAAAATCCAGCGTTCGGTTAGCCTTCAATCCTCACCTAAGTTCCATGATGAAGTCAATGGCCAGCATTCTTCTAACAATGCACCACCACCGCAGTCTTACCCTACTGCTGGTTACTCTTCCCATGATTTCCATCCACCTCCTCCAACAAATAGACCAGAAACTTCTGATTATTCTCAGCCATACCAGCAGCAACCCTACCCACATGAACCCCAACAGCATTTGCCACATAACTATCCTTCTCATGAAAATAATTTCTCCTATCCTAATTTCCAATCTTATCCAAGTTTTACAGAAAGCAATATTCCAGCAGTCACATCCCACTATCCCTCTTACTATCAGGGCTCTGATCCTTCCTACTCTGCCCAGTCAGCTCCTTCCTTCTCTCCCCAGTCAGCTCCTTCCTTCTCTCCCCAGTCAGCTCCTTCACCTGCCCAATACCTGTCGAGCAACAGAAATGGGACTGTTCCAGAACCTGCTCCTACTCCTACTCCTGCAAAGACATACCAGTATGACAGTAGCTACCAGCCATCACCTGAGAAAATTGCCGAGGCACATAAGGCTGCCAGATTTGCAGTTGGGGCGTTGGCATTTGATGATGTGTCAGTTGCAGTAGATCACTTAATTAAATCGCTTGAACTGTTGACGAATCCATCAGCTGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

439

Amino Acids

48.29

Weight (kDa)

5.6

Isoelectric Point (pI)

66.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26750
fragaria_vesca	FvH4_5g39180 FvH4_5g39180
malus_domestica	MD00G1179000.v1.1 MD03G1294800.v1.1
prunus_persica	Prupe.8G266900_v2.0.a1
pyrus_communis	pycom03g23320 pycom11g27410
rosa_chinensis	RchiOBHm_Chr7g0241441
rosa_laevigata	RLG00000000581
rosa_multiflora	Rmu_co8080026.1_g000001 Rmu_co8368331.1_g000001 Rmu_sc0015905.1_g000004 Rmu_sc0030862.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219140
rosa_rugosa	Rorug07G0343900 Rorug07G0343900
rosa_samantha	Rh7AG498500 Rh7BG469100 Rh7CG515400 Rh7DG483200
rosa_wichuraiana	Rw7G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1087
Acc36I	ACCTGC	2 cut(s)	1087, 1132
AccB7I	CCANNNNNTGG	2 cut(s)	503, 1307
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	21, 740
AclWI	GGATC	3 cut(s)	121, 566, 992
AcoI	YGGCCR	1 cut(s)	709
AcuI	CTGAAG	4 cut(s)	143, 243, 356, 477
AfaI	GTAC	4 cut(s)	41, 104, 145, 401
AfiI	CCNNNNNNNGG	6 cut(s)	461, 473, 503, 664, 758, 1307
AgsI	TTSAA	6 cut(s)	191, 307, 439, 492, 677, 1286
AjnI	CCWGG	1 cut(s)	556
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
AluBI	AGCT	9 cut(s)	28, 187, 407, 434, 1022, 1046, 1070, 1170, 1307
AluI	AGCT	9 cut(s)	28, 187, 407, 434, 1022, 1046, 1070, 1170, 1307
AlwI	GGATC	3 cut(s)	121, 566, 992
AlwNI	CAGNNNCTG	1 cut(s)	1124
AoxI	GGCC	4 cut(s)	218, 463, 530, 709
ApeKI	GCWGC	8 cut(s)	184, 329, 404, 416, 542, 607, 838, 1211
AspS9I	GGNCC	4 cut(s)	218, 464, 530, 560
AsuHPI	GGTGA	4 cut(s)	570, 675, 1068, 1173
AvaII	GGWCC	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BalI	TGGCCA	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	21, 995
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	8 cut(s)	196, 316, 416, 428, 554, 619, 850, 1198
BccI	CCATC	6 cut(s)	505, 574, 583, 789, 1186, 1309
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	209
BfuAI	ACCTGC	2 cut(s)	1087, 1132
BisI	GCNGC	8 cut(s)	185, 330, 405, 417, 543, 608, 839, 1212
BlsI	GCNGC	8 cut(s)	186, 331, 406, 418, 544, 609, 840, 1213
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	4 cut(s)	218, 464, 530, 560
BmiI	GGNNCC	2 cut(s)	219, 466
BmrFI	CCNGG	1 cut(s)	558
BmrI	ACTGGG	4 cut(s)	577, 1009, 1033, 1057
BmuI	ACTGGG	4 cut(s)	577, 1009, 1033, 1057
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	260, 404
BsaBI	GATNNNNATC	2 cut(s)	483, 780
BsaJI	CCNNGG	1 cut(s)	1197
BsaXI	ACNNNNNCTCC	4 cut(s)	613, 643, 1123, 1153
Bsc4I	CCNNNNNNNGG	6 cut(s)	461, 473, 503, 664, 758, 1307
Bse1I	ACTGG	6 cut(s)	358, 583, 1015, 1039, 1063, 1156
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	2 cut(s)	483, 780
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	1197
BseGI	GGATG	3 cut(s)	513, 781, 965
BseJI	GATNNNNATC	2 cut(s)	483, 780
BseLI	CCNNNNNNNGG	6 cut(s)	461, 473, 503, 664, 758, 1307
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	4 cut(s)	146, 647, 839, 1176
BseNI	ACTGG	6 cut(s)	358, 583, 1015, 1039, 1063, 1156
BseRI	GAGGAG	3 cut(s)	20, 621, 780
BseXI	GCAGC	8 cut(s)	196, 316, 416, 428, 554, 619, 850, 1198
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	4 cut(s)	220, 465, 532, 711
BslFI	GGGAC	1 cut(s)	1123
BslI	CCNNNNNNNGG	6 cut(s)	461, 473, 503, 664, 758, 1307
BsmFI	GGGAC	1 cut(s)	1123
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	4 cut(s)	220, 465, 532, 711
Bsp1286I	GDGCHC	2 cut(s)	21, 995
Bsp143I	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
BspACI	CCGC	2 cut(s)	21, 740
BspANI	GGCC	4 cut(s)	220, 465, 532, 711
BspCNI	CTCAG	4 cut(s)	145, 646, 838, 1177
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	3 cut(s)	177, 640, 892
BspLI	GGNNCC	2 cut(s)	219, 466
BspMAI	CTGCAG	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	1087, 1132
BspPI	GGATC	3 cut(s)	121, 566, 992
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	6 cut(s)	358, 583, 1015, 1039, 1063, 1156
BssECI	CCNNGG	1 cut(s)	1197
BssMI	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	4 cut(s)	95, 1114, 1166, 1290
Bst6I	CTCTTC	1 cut(s)	772
BstC8I	GCNNGC	5 cut(s)	7, 21, 368, 463, 713
BstDEI	CTNAG	5 cut(s)	132, 633, 687, 825, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	513, 781, 965
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	8 cut(s)	129, 286, 382, 487, 526, 574, 1000, 1267
BstMBI	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	8 cut(s)	196, 316, 416, 428, 554, 619, 850, 1198
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	220, 465, 532, 711
BtsCI	GGATG	3 cut(s)	513, 781, 965
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
BveI	ACCTGC	2 cut(s)	1087, 1132
Cac8I	GCNNGC	5 cut(s)	7, 21, 368, 463, 713
CaiI	CAGNNNCTG	1 cut(s)	1124
CciI	TCATGA	3 cut(s)	177, 640, 892
Cfr13I	GGNCC	4 cut(s)	218, 464, 530, 560
Csp6I	GTAC	4 cut(s)	40, 103, 144, 400
CviAII	CATG	6 cut(s)	178, 641, 695, 773, 854, 893
CviQI	GTAC	4 cut(s)	40, 103, 144, 400
DdeI	CTNAG	5 cut(s)	132, 633, 687, 825, 1185
DpnI	GATC	8 cut(s)	128, 285, 381, 486, 525, 573, 999, 1266
DpnII	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
Eco24I	GRGCYC	2 cut(s)	21, 995
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	4 cut(s)	143, 243, 356, 477
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	2 cut(s)	218, 464
EcoRII	CCWGG	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	21, 995
FaeI	CATG	6 cut(s)	181, 644, 698, 776, 857, 896
FalI	AAGNNNNNCTT	4 cut(s)	17, 49, 418, 450
FaqI	GGGAC	1 cut(s)	1123
FatI	CATG	6 cut(s)	177, 640, 694, 772, 853, 892
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	8 cut(s)	185, 330, 405, 417, 543, 608, 839, 1212
FokI	GGATG	3 cut(s)	520, 768, 952
FriOI	GRGCYC	2 cut(s)	21, 995
Fsp4HI	GCNGC	8 cut(s)	185, 330, 405, 417, 543, 608, 839, 1212
GluI	GCNGC	8 cut(s)	185, 330, 405, 417, 543, 608, 839, 1212
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	4 cut(s)	220, 465, 532, 711
Hin1II	CATG	6 cut(s)	181, 644, 698, 776, 857, 896
HincII	GTYRAC	2 cut(s)	601, 1293
HindII	GTYRAC	2 cut(s)	601, 1293
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	1297
HphI	GGTGA	4 cut(s)	570, 675, 1068, 1173
Hpy166II	GTNNAC	2 cut(s)	601, 1293
Hpy188I	TCNGA	4 cut(s)	135, 571, 817, 997
Hpy188III	TCNNGA	6 cut(s)	178, 239, 383, 641, 893, 1118
Hpy8I	GTNNAC	2 cut(s)	601, 1293
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	4 cut(s)	95, 1114, 1166, 1290
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	8 cut(s)	64, 211, 314, 332, 731, 1145, 1223, 1259
HpyF3I	CTNAG	5 cut(s)	132, 633, 687, 825, 1185
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	6 cut(s)	181, 644, 698, 776, 857, 896
Kzo9I	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
LmnI	GCTCC	6 cut(s)	33, 112, 1027, 1051, 1075, 1132
Lsp1109I	GCAGC	8 cut(s)	196, 316, 416, 428, 554, 619, 850, 1198
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	3 cut(s)	204, 761, 961
MalI	GATC	8 cut(s)	128, 285, 381, 486, 525, 573, 999, 1266
MboI	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
MboII	GAAGA	4 cut(s)	136, 236, 711, 759
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	21, 995
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	6 cut(s)	157, 492, 901, 916, 1191, 1272
MluNI	TGGCCA	1 cut(s)	711
MmeI	TCCRAC	2 cut(s)	70, 818
Mox20I	TGGCCA	1 cut(s)	711
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	4 cut(s)	254, 354, 1271, 1275
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	1307
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
NlaIII	CATG	6 cut(s)	181, 644, 698, 776, 857, 896
NlaIV	GGNNCC	2 cut(s)	219, 466
NmeAIII	GCCGAG	1 cut(s)	1222
NmuCI	GTSAC	2 cut(s)	204, 961
PacI	TTAATTAA	1 cut(s)	1275
PagI	TCATGA	3 cut(s)	177, 640, 892
PaqCI	CACCTGC	1 cut(s)	1087
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 292
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	1 cut(s)	1297
PflMI	CCANNNNNTGG	2 cut(s)	503, 1307
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	8 cut(s)	186, 331, 406, 418, 544, 609, 840, 1213
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	2 cut(s)	219, 466
PspPI	GGNCC	4 cut(s)	218, 464, 530, 560
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	1124
PsuI	RGATCY	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	1307
RsaI	GTAC	4 cut(s)	41, 104, 145, 401
RsaNI	GTAC	4 cut(s)	40, 103, 144, 400
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	254, 354, 1271, 1275
SatI	GCNGC	8 cut(s)	185, 330, 405, 417, 543, 608, 839, 1212
Sau3AI	GATC	8 cut(s)	126, 283, 379, 484, 523, 571, 997, 1264
Sau96I	GGNCC	4 cut(s)	218, 464, 530, 560
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	2 cut(s)	21, 995
SfcI	CTRYAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	239, 383
SmoI	CTYRAG	2 cut(s)	239, 383
Sse9I	AATT	6 cut(s)	157, 492, 901, 916, 1191, 1272
SsiI	CCGC	2 cut(s)	21, 740
SspI	AATATT	1 cut(s)	952
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	4 cut(s)	95, 1114, 1166, 1290
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	4 cut(s)	97, 295, 500, 1094
TasI	AATT	6 cut(s)	157, 492, 901, 916, 1191, 1272
TfiI	GAWTC	1 cut(s)	1297
Tru1I	TTAA	4 cut(s)	254, 354, 1271, 1275
Tru9I	TTAA	4 cut(s)	254, 354, 1271, 1275
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	204, 961
TseI	GCWGC	8 cut(s)	184, 329, 404, 416, 542, 607, 838, 1211
Tsp45I	GTSAC	2 cut(s)	204, 961
TspDTI	ATGAA	7 cut(s)	194, 507, 609, 629, 714, 870, 909
TspRI	CASTG	1 cut(s)	213
Van91I	CCANNNNNTGG	2 cut(s)	503, 1307
VpaK11BI	GGWCC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.