AT2G47540

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015856
Physical Location & Seq
Forward (+)
19505827 .. 19506681
855 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47540.1

Sequence Viewer

Length: 522 bp
ATGGCCCAAACTTGTTCGATTCTCTACATTCCCTACATGCTGCTTCTCTCGTCTCTGTTTGCCGCCGGAATAGCCACAATCACCGAGGGGGAACTGCTTTCCTCGATGATCGGAGTCCAAGGTCTCATCTACTGCAAACGAGGATCTAAGCTTACACCTATCCAAGGTGCAGTGGCGAGAGTGACATGTGAGAGAACTGATGAATATGGTTACGAAGCGGAGGATGTGACGGTGCTTAGCCAAGCGACGGATGCAAAGGGTTATTTCTTGGCGACGCTTTCTTCGTCGGAGGTGAAGGATTATAAGAAGGTGATCAAGATCAAAGAGTGCAGGGCGTTTCTTGAGCTTTCTCCATCTGACACGTGTTCTTTTCCGACGGAGATTAACCGTGGAATCAGCGGAGCCATTCTCCAAAACTATCGTCTCCTAGAAAACAAGCTTAAGATGAAGCTTTTCACCGTTGGCCCTTTCGTCTTCTCCTCTGAGGAAACTCAGGACAAGTCTATCCCCAACGGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

19.05

Weight (kDa)

5.6

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 39 - 134 1.8e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AciI CCGC 3 cut(s) 63, 218, 399
AclWI GGATC 1 cut(s) 151
AcvI CACGTG 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 164, 247
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 3 cut(s) 185, 360, 362
AluBI AGCT 4 cut(s) 151, 346, 439, 451
AluI AGCT 4 cut(s) 151, 346, 439, 451
Alw26I GTCTC 3 cut(s) 57, 128, 428
AlwI GGATC 1 cut(s) 151
AoxI GGCC 2 cut(s) 3, 463
ApeKI GCWGC 1 cut(s) 40
ArsI GACNNNNNNTTYG 4 cut(s) 265, 297, 406, 438
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 4, 464
AsuHPI GGTGA 4 cut(s) 73, 304, 322, 448
BbrPI CACGTG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 361
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 57, 128, 428
BfaI CTAG 1 cut(s) 428
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 2 cut(s) 41, 63
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 2 cut(s) 42, 64
BmgT120I GGNCC 2 cut(s) 4, 464
BmiI GGNNCC 1 cut(s) 403
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 466
BplI GAGNNNNNCTC 2 cut(s) 393, 425
Bpu1102I GCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 362
BsaAI YACGTR 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 84, 118, 163, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 247
Bse8I GATNNNNATC 1 cut(s) 317
BseDI CCNNGG 4 cut(s) 84, 118, 163, 388
BseGI GGATG 2 cut(s) 229, 256
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 2 cut(s) 164, 247
BseMII CTCAG 2 cut(s) 474, 506
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 27
BsgI GTGCAG 2 cut(s) 189, 349
BshFI GGCC 2 cut(s) 5, 465
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 164, 247
BsmAI GTCTC 3 cut(s) 57, 128, 428
BsmBI CGTCTC 2 cut(s) 57, 428
BsnI GGCC 2 cut(s) 5, 465
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 4 cut(s) 108, 143, 312, 318
Bsp1720I GCTNAGC 1 cut(s) 236
BspACI CCGC 3 cut(s) 63, 218, 399
BspANI GGCC 2 cut(s) 5, 465
BspCNI CTCAG 2 cut(s) 475, 505
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 1 cut(s) 151
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 84, 118, 163, 388
BssMI GATC 4 cut(s) 108, 143, 312, 318
BssT1I CCWWGG 2 cut(s) 118, 163
Bst4CI ACNGT 3 cut(s) 232, 389, 460
BstAFI CTTAAG 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 363
BstDEI CTNAG 4 cut(s) 147, 236, 483, 492
BstDSI CCRYGG 1 cut(s) 388
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 229, 256
BstKTI GATC 4 cut(s) 111, 146, 315, 321
BstMAI GTCTC 3 cut(s) 57, 128, 428
BstMBI GATC 4 cut(s) 108, 143, 312, 318
BstMWI GCNNNNNNNGC 2 cut(s) 71, 251
BstNSI RCATGY 2 cut(s) 40, 189
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 2 cut(s) 5, 465
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 229, 256
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 4, 464
CseI GACGC 1 cut(s) 283
CviAII CATG 2 cut(s) 37, 186
DdeI CTNAG 4 cut(s) 147, 236, 483, 492
DpnI GATC 4 cut(s) 110, 145, 314, 320
DpnII GATC 4 cut(s) 108, 143, 312, 318
Eco130I CCWWGG 2 cut(s) 118, 163
Eco31I GGTCTC 1 cut(s) 128
Eco72I CACGTG 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 118, 163
ErhI CCWWGG 2 cut(s) 118, 163
Esp3I CGTCTC 2 cut(s) 57, 428
FaeI CATG 2 cut(s) 40, 189
FaiI YATR 4 cut(s) 38, 187, 207, 303
FatI CATG 2 cut(s) 36, 185
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 41, 63
FokI GGATG 2 cut(s) 236, 263
Fsp4HI GCNGC 2 cut(s) 41, 63
FspBI CTAG 1 cut(s) 428
GluI GCNGC 2 cut(s) 41, 63
HaeIII GGCC 2 cut(s) 5, 465
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 40, 189
HindIII AAGCTT 3 cut(s) 149, 437, 449
HinfI GANTC 3 cut(s) 19, 114, 393
HpaII CCGG 1 cut(s) 66
HphI GGTGA 4 cut(s) 73, 304, 322, 448
Hpy188I TCNGA 5 cut(s) 113, 289, 358, 375, 484
Hpy188III TCNNGA 3 cut(s) 316, 341, 494
Hpy99I CGWCG 4 cut(s) 250, 277, 289, 379
HpyAV CCTTC 2 cut(s) 289, 301
HpyCH4III ACNGT 3 cut(s) 232, 389, 460
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 4 cut(s) 135, 170, 254, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 251
HpyF3I CTNAG 4 cut(s) 147, 236, 483, 492
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 2 cut(s) 40, 189
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 4 cut(s) 108, 143, 312, 318
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 3 cut(s) 79, 316, 479
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 181, 209, 226
MalI GATC 4 cut(s) 110, 145, 314, 320
MboI GATC 4 cut(s) 108, 143, 312, 318
MboII GAAGA 2 cut(s) 273, 466
MflI RGATCY 1 cut(s) 143
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 2 cut(s) 267, 398
MnlI CCTC 7 cut(s) 79, 112, 134, 214, 283, 478, 490
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 2 cut(s) 384, 441
MspA1I CMGCKG 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 71, 251
NdeII GATC 4 cut(s) 108, 143, 312, 318
NlaIII CATG 2 cut(s) 40, 189
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 181, 226
NspI RCATGY 2 cut(s) 40, 189
PciI ACATGT 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 19, 393
PkrI GCNGC 2 cut(s) 42, 64
PleI GAGTC 1 cut(s) 122
PmaCI CACGTG 1 cut(s) 363
PmlI CACGTG 1 cut(s) 363
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 363
PscI ACATGT 1 cut(s) 185
PsiI TTATAA 1 cut(s) 303
PspCI CACGTG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 2 cut(s) 4, 464
PsuI RGATCY 1 cut(s) 143
SaqAI TTAA 2 cut(s) 384, 441
SatI GCNGC 2 cut(s) 41, 63
Sau3AI GATC 4 cut(s) 108, 143, 312, 318
Sau96I GGNCC 2 cut(s) 4, 464
SchI GAGTC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 341, 440
SmoI CTYRAG 2 cut(s) 341, 440
SsiI CCGC 3 cut(s) 63, 218, 399
SspMI CTAG 1 cut(s) 428
StyI CCWWGG 2 cut(s) 118, 163
TaaI ACNGT 3 cut(s) 232, 389, 460
TaiI ACGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 17, 104
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 19, 393
Tru1I TTAA 2 cut(s) 384, 441
Tru9I TTAA 2 cut(s) 384, 441
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 2 cut(s) 181, 226
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 181, 226
TspDTI ATGAA 2 cut(s) 216, 461
TspGWI ACGGA 2 cut(s) 263, 392
TspRI CASTG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 162
XceI RCATGY 2 cut(s) 40, 189
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.