RchiOBHm_Chr6g0294411

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015856
Physical Location & Seq
Reverse (-)
56743457 .. 56744219
763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26423

Sequence Viewer

Length: 522 bp
ATGGCTTTGAACCATTTCATCTCATATGCTAGCTTTTTGTTAATCTTGGCAGTAATGGTGGTTACGGTTTCTGCAGAACCCGAGTACAAGAAACCCAAACTAGAAAAGGAGAACTTACTATCAACCATTGTGGGCATTCAAGGCCTTGTGTATTGCAAATCAGGCCCTAAAGTCACTCCCCTTGAAGGATCGGTGGCCAGGATAACATGTGACGCTGTAGATGAATATGGGTTCGAAACTGCACCAATCACTATTTTGAGTGATGCAACTGATGCAAAGGGTTACTTCCTTGCAACAATATCTCCATTTGAGATTCAAAACAAGAAGAAGCTGACACAGTGCAAAGCTTTTCTTGAACTCTCTCCACTAGATTCTTGCAACGTTCTCACAGATGCAAACAATGGAATCAGTGGCGCTCTACTCACTTCATATCACCTCCTCCATGAGAAGAACATGAAGTTATTTACTGTAGGGCCTTTCATTTGCGCATCAGAATCTAAACCGGTCGATAATGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

5.6

Isoelectric Point (pI)

21.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 46 - 138 4.5e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 487
AclI AACGTT 1 cut(s) 381
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 206
AgeI ACCGGT 1 cut(s) 502
AgsI TTSAA 5 cut(s) 10, 140, 185, 317, 356
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 33, 331, 347
AluI AGCT 3 cut(s) 33, 331, 347
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 4 cut(s) 142, 163, 195, 473
AsiGI ACCGGT 1 cut(s) 502
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 416, 488
AspS9I GGNCC 2 cut(s) 164, 473
AsuHPI GGTGA 1 cut(s) 425
AsuII TTCGAA 1 cut(s) 234
AsuNHI GCTAGC 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 80
BalI TGGCCA 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 4 cut(s) 30, 101, 368, 520
BfmI CTRYAG 3 cut(s) 72, 216, 468
BfoI RGCGCY 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 164, 473
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 4 cut(s) 253, 262, 382, 497
BmtI GCTAGC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 502
BseBI CCWGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 4 cut(s) 144, 165, 197, 475
BshTI ACCGGT 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 4 cut(s) 144, 165, 197, 475
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 188
BspANI GGCC 4 cut(s) 144, 165, 197, 475
BspMAI CTGCAG 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 67, 339, 469
BstAPI GCANNNNNTGC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 2 cut(s) 416, 488
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 3 cut(s) 141, 162, 272
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 3 cut(s) 72, 216, 468
BsuRI GGCC 4 cut(s) 144, 165, 197, 475
BtsIMutI CAGTG 2 cut(s) 344, 415
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 2 cut(s) 416, 488
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 164, 473
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 85
CspAI ACCGGT 1 cut(s) 502
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 3 cut(s) 207, 443, 454
CviJI RGCY 8 cut(s) 5, 33, 144, 165, 197, 331, 347, 475
CviKI_1 RGCY 8 cut(s) 5, 33, 144, 165, 197, 331, 347, 475
CviQI GTAC 1 cut(s) 85
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 164, 473
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 3 cut(s) 210, 446, 457
FaiI YATR 7 cut(s) 25, 27, 208, 228, 430, 444, 455
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 269, 301, 336, 368
FatI CATG 3 cut(s) 206, 442, 453
FauNDI CATATG 1 cut(s) 25
FspBI CTAG 4 cut(s) 30, 101, 368, 520
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 2 cut(s) 415, 487
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 4 cut(s) 144, 165, 197, 475
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 221
HhaI GCGC 2 cut(s) 416, 488
Hin1II CATG 3 cut(s) 210, 446, 457
Hin6I GCGC 2 cut(s) 414, 486
HinP1I GCGC 2 cut(s) 414, 486
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 4 cut(s) 313, 371, 405, 494
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 425
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 67, 339, 469
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 9 cut(s) 74, 156, 242, 266, 275, 293, 342, 378, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 162, 272
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 3 cut(s) 210, 446, 457
HspAI GCGC 2 cut(s) 414, 486
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 147, 184, 211, 516
LweI GCATC 4 cut(s) 253, 262, 382, 497
MaeI CTAG 4 cut(s) 30, 101, 368, 520
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 5 cut(s) 61, 172, 209, 281, 515
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 2 cut(s) 337, 460
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 2 cut(s) 446, 449
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 141, 162, 272
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 3 cut(s) 210, 446, 457
NmuCI GTSAC 2 cut(s) 172, 209
NsbI TGCGCA 1 cut(s) 487
NspI RCATGY 1 cut(s) 210
NspV TTCGAA 1 cut(s) 234
PceI AGGCCT 1 cut(s) 144
PciI ACATGT 1 cut(s) 206
PctI GAATGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 4 cut(s) 313, 371, 405, 494
PinAI ACCGGT 1 cut(s) 502
PscI ACATGT 1 cut(s) 206
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspPI GGNCC 2 cut(s) 164, 473
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 2 cut(s) 164, 473
ScrFI CCNGG 1 cut(s) 199
SetI ASST 5 cut(s) 35, 333, 349, 384, 438
SfaNI GCATC 4 cut(s) 253, 262, 382, 497
SfcI CTRYAG 3 cut(s) 72, 216, 468
SfuI TTCGAA 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 144
SspMI CTAG 4 cut(s) 30, 101, 368, 520
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 3 cut(s) 67, 339, 469
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 234, 507
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 4 cut(s) 313, 371, 405, 494
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 2 cut(s) 344, 415
TseFI GTSAC 2 cut(s) 172, 209
Tsp45I GTSAC 2 cut(s) 172, 209
TspDTI ATGAA 5 cut(s) 7, 237, 417, 469, 470
TspRI CASTG 2 cut(s) 344, 415
XceI RCATGY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 4 cut(s) 30, 101, 368, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.