Prupe.8G264700_v2.0.a1

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015856
Physical Location & Seq
Reverse (-)
22205322 .. 22205965
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G264700.1

Sequence Viewer

Length: 501 bp
ATGGCTTTTAACCGTTTCTTCTCTGCAACCTCTTTGCTAGTCTTGGCATTAGTAGCATTGCTGATTACGCCTTCTTCTGCTGCTAGCAATAATCACTATGATGAGATAAACCTACAACCAACCAAATCCATTTTGGGCATTCAAGGCCTTGTTTATTGCAAATCAGGCCCTAAAGTCATCCCTCTCGAAGGGGCGGTGGCCAGGATAACATGTGAGGCTGTGGACGAATATGGGATGGAAAGTGCACCCATGACCATCTTGAGCGATGCAACTGATGCCAGGGGTTATTTCTTTGCAACACTTTCTCCTTATGAGATTGAAAATCACAAGAAGCTCACTCAGTGCAGAGCCTTTCTCGAACTCTCTCCATTGGAGTCTTGTAACGTTCCCACAGACTTGAACAATGGAATAAGTGGTGCTGTGCTTGCTTCATATCGTCTCCTCCACGACAAGAACATAAGGCTTTATACTGTAGGGCCTTTCACGTTCACATCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

167

Amino Acids

18.06

Weight (kDa)

5.55

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AclI AACGTT 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 143, 320, 400
AjnI CCWGG 2 cut(s) 200, 278
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 443
Alw44I GTGCAC 1 cut(s) 243
AoxI GGCC 4 cut(s) 145, 166, 198, 476
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 167, 476
AsuNHI GCTAGC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 247
BalI TGGCCA 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 229, 263
BciT130I CCWGG 2 cut(s) 202, 280
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 2 cut(s) 38, 84
BfmI CTRYAG 1 cut(s) 471
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 202, 280
BmgT120I GGNCC 2 cut(s) 167, 476
BmrFI CCNGG 2 cut(s) 202, 280
BmsI GCATC 2 cut(s) 256, 265
BmtI GCTAGC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BpuEI CTTGAG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 56
BseBI CCWGG 2 cut(s) 202, 280
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 3 cut(s) 177, 240, 494
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 4 cut(s) 147, 168, 200, 478
BsiHKAI GWGCWC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 443
BsmBI CGTCTC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 4 cut(s) 147, 168, 200, 478
Bsp1286I GDGCHC 1 cut(s) 247
BspACI CCGC 1 cut(s) 194
BspANI GGCC 4 cut(s) 147, 168, 200, 478
BspCNI CTCAG 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 202, 280
Bst4CI ACNGT 2 cut(s) 14, 472
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 85, 426
BstDEI CTNAG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 3 cut(s) 177, 240, 494
BstMAI GTCTC 1 cut(s) 443
BstMWI GCNNNNNNNGC 6 cut(s) 53, 67, 144, 165, 275, 425
BstNI CCWGG 2 cut(s) 202, 280
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 200, 278
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 4 cut(s) 147, 168, 200, 478
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 177, 240, 494
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 2 cut(s) 85, 426
Cfr13I GGNCC 2 cut(s) 167, 476
CviAII CATG 2 cut(s) 210, 250
CviJI RGCY 9 cut(s) 5, 147, 168, 200, 218, 334, 350, 463, 478
CviKI_1 RGCY 9 cut(s) 5, 147, 168, 200, 218, 334, 350, 463, 478
DdeI CTNAG 1 cut(s) 339
DraIII CACNNNGTG 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoO109I RGGNCCY 2 cut(s) 167, 476
EcoRII CCWGG 2 cut(s) 200, 278
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 2 cut(s) 213, 253
FaiI YATR 8 cut(s) 99, 211, 231, 251, 312, 433, 458, 468
FatI CATG 2 cut(s) 209, 249
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 164, 247, 481
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 38, 84
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 4 cut(s) 147, 168, 200, 478
Hin1II CATG 2 cut(s) 213, 253
HinfI GANTC 1 cut(s) 374
Hpy166II GTNNAC 3 cut(s) 223, 245, 489
Hpy188III TCNNGA 3 cut(s) 185, 259, 356
Hpy8I GTNNAC 3 cut(s) 223, 245, 489
HpyAV CCTTC 2 cut(s) 81, 182
HpyCH4III ACNGT 2 cut(s) 14, 472
HpyCH4IV ACGT 2 cut(s) 384, 485
HpyCH4V TGCA 6 cut(s) 26, 159, 245, 269, 296, 345
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 67, 144, 165, 275, 425
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 2 cut(s) 384, 485
Hsp92II CATG 2 cut(s) 213, 253
LpnPI CCDG 5 cut(s) 150, 187, 214, 265, 292
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 256, 265
MaeI CTAG 2 cut(s) 38, 84
MaeII ACGT 2 cut(s) 384, 485
MaeIII GTNAC 1 cut(s) 380
MboII GAAGA 2 cut(s) 10, 66
MhlI GDGCHC 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 40, 192, 208, 452
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 202, 280
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 2 cut(s) 202, 280
MwoI GCNNNNNNNGC 6 cut(s) 53, 67, 144, 165, 275, 425
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 213, 253
NspI RCATGY 1 cut(s) 213
PceI AGGCCT 1 cut(s) 147
PciI ACATGT 1 cut(s) 209
PctI GAATGC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PscI ACATGT 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 200, 278
PspGI CCWGG 2 cut(s) 200, 278
PspPI GGNCC 2 cut(s) 167, 476
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 81
Sau96I GGNCC 2 cut(s) 167, 476
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 202, 280
SduI GDGCHC 1 cut(s) 247
SetI ASST 5 cut(s) 32, 114, 336, 387, 488
SfaNI GCATC 2 cut(s) 256, 265
SfcI CTRYAG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 194
SspMI CTAG 2 cut(s) 38, 84
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 200, 278
TaaI ACNGT 2 cut(s) 14, 472
TaiI ACGT 2 cut(s) 387, 488
TaqI TCGA 2 cut(s) 186, 357
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 347
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 420
TspRI CASTG 1 cut(s) 347
VneI GTGCAC 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 186
XceI RCATGY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 2 cut(s) 38, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.