Rh6AG356900

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015856
Physical Location & Seq
Reverse (-)
55640688 .. 55641926
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG356900.1

Sequence Viewer

Length: 525 bp
ATGGCTTTGAACCATTTCATCTCATATGCTAGCTTTTTGTTAATCTTGGCAGTAATGGTGGTTACGGTTTCTGCAGAACCCGAGTACAAGAAACCCAAACTAGAAAAGGAGAACTTACTATCAACCACTGTGGGCATTCAAGGCCTTGTGTATTGCAAATCAGGCCCTAAAGTCACTCCCCTTGAAGGATCAGTGGCCAGGATAACATGTGAGGCTGTAGATGAATATGGGTTCGAAACTGCACCAATCACTATTTTGAGTGATGCAACTGATGCAAAGGGTTACTTCCTTGCAACAATATCTCCATTTGAGATTAAAAACAACAAGAAGAAGCTGACACGGTGCAAAGCTTTTCTTGAACTCTCTCCACTAGATTCTTGCAACGTTCTCACAGATGCAAACAATGGAATCAGTGGCGCTCTACTCACTTCATATCACCTCCTCCATGAGAAGAACATGAAGTTATTTACTGTAGGGCCTTTCATTTTCGCATCAGAATCTAAACCGGTCGATAATGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

174

Amino Acids

19.0

Weight (kDa)

6.3

Isoelectric Point (pI)

21.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 46 - 139 9.2e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 384
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 206
AgeI ACCGGT 1 cut(s) 505
AgsI TTSAA 4 cut(s) 10, 140, 185, 359
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 33, 334, 350
AluI AGCT 3 cut(s) 33, 334, 350
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 4 cut(s) 142, 163, 195, 476
AsiGI ACCGGT 1 cut(s) 505
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 2 cut(s) 164, 476
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 234
AsuNHI GCTAGC 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 80
BalI TGGCCA 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 4 cut(s) 30, 101, 371, 523
BfmI CTRYAG 3 cut(s) 72, 216, 471
BfoI RGCGCY 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 164, 476
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 4 cut(s) 253, 262, 385, 500
BmtI GCTAGC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 505
BseBI CCWGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 4 cut(s) 144, 165, 197, 478
BshTI ACCGGT 1 cut(s) 505
BsiEI CGRYCG 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 4 cut(s) 144, 165, 197, 478
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 188
BspANI GGCC 4 cut(s) 144, 165, 197, 478
BspMAI CTGCAG 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 4 cut(s) 67, 130, 342, 472
BstAPI GCANNNNNTGC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 3 cut(s) 141, 162, 272
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 3 cut(s) 72, 216, 471
BsuRI GGCC 4 cut(s) 144, 165, 197, 478
BtsIMutI CAGTG 3 cut(s) 126, 198, 418
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 419
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 164, 476
Csp6I GTAC 1 cut(s) 85
CspAI ACCGGT 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 3 cut(s) 207, 446, 457
CviJI RGCY 9 cut(s) 5, 33, 144, 165, 197, 215, 334, 350, 478
CviKI_1 RGCY 9 cut(s) 5, 33, 144, 165, 197, 215, 334, 350, 478
CviQI GTAC 1 cut(s) 85
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 164, 476
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 3 cut(s) 210, 449, 460
FaiI YATR 7 cut(s) 25, 27, 208, 228, 433, 447, 458
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 269, 301, 339, 371
FatI CATG 3 cut(s) 206, 445, 456
FauNDI CATATG 1 cut(s) 25
FspBI CTAG 4 cut(s) 30, 101, 371, 523
GlaI GCGC 1 cut(s) 418
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 4 cut(s) 144, 165, 197, 478
HapII CCGG 1 cut(s) 506
HhaI GCGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 210, 449, 460
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 3 cut(s) 374, 408, 497
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 4 cut(s) 67, 130, 342, 472
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 9 cut(s) 74, 156, 242, 266, 275, 293, 345, 381, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 162, 272
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 210, 449, 460
HspAI GCGC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 147, 184, 211, 519
LweI GCATC 4 cut(s) 253, 262, 385, 500
MaeI CTAG 4 cut(s) 30, 101, 371, 523
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 4 cut(s) 61, 172, 281, 518
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 2 cut(s) 340, 463
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 3 cut(s) 205, 449, 452
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 41, 315
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 141, 162, 272
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 3 cut(s) 210, 449, 460
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 210
NspV TTCGAA 1 cut(s) 234
PceI AGGCCT 1 cut(s) 144
PciI ACATGT 1 cut(s) 206
PctI GAATGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 374, 408, 497
PinAI ACCGGT 1 cut(s) 505
PscI ACATGT 1 cut(s) 206
Psp1406I AACGTT 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspPI GGNCC 2 cut(s) 164, 476
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 41, 315
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 2 cut(s) 164, 476
ScrFI CCNGG 1 cut(s) 199
SetI ASST 5 cut(s) 35, 336, 352, 387, 441
SfaNI GCATC 4 cut(s) 253, 262, 385, 500
SfcI CTRYAG 3 cut(s) 72, 216, 471
SfuI TTCGAA 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 144
SspMI CTAG 4 cut(s) 30, 101, 371, 523
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 4 cut(s) 67, 130, 342, 472
TaiI ACGT 1 cut(s) 387
TaqI TCGA 2 cut(s) 234, 510
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 3 cut(s) 374, 408, 497
Tru1I TTAA 2 cut(s) 41, 315
Tru9I TTAA 2 cut(s) 41, 315
TscAI CASTG 3 cut(s) 133, 198, 418
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 5 cut(s) 7, 237, 420, 472, 473
TspRI CASTG 3 cut(s) 133, 198, 418
XceI RCATGY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 4 cut(s) 30, 101, 371, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.