Rw6G031110

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015856
Physical Location & Seq
Reverse (-)
55156665 .. 55157365
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031110.1

Sequence Viewer

Length: 462 bp
ATGGTTTCTGCAGAACCCGAGTACAAGAAACCCAAACTAGAAAAGGAGAACTTACTATCAACGATTGTGGGCATTCAAGGCCTTGTGTATTGCAAATCAGGCCCTAAAGTCACTCCCCTTGAAGGATCGGTGGCCAGGATAACATGTGAGGCTGTAGATCAATATGGGTTCGAAACTGCACCAATCACTATTTTGAGTGATGCAACTGATGCAAAGGGTTACTTCCTTGCAACTATATCTCCATTTGAGATTCAAAACAACAAGAAGAAGCTGACACAGTGCAAAGCTTTTCTTGAACTCTCTCCACTAGATTCTTGCAACGTTCTCACAGATGCAAACAATGGAATCAGTGGCGCTCTACTCACTTCATATCACCTCCTCCATGAGAAGAACATGAAGTTATTTACTGTAGGGCCTTTCATTTTCGCATCAGAATCTAAACCGGTCGATAATGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

153

Amino Acids

16.68

Weight (kDa)

5.69

Isoelectric Point (pI)

18.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 25 - 118 5e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 321
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 143
AgeI ACCGGT 1 cut(s) 442
AgsI TTSAA 4 cut(s) 77, 122, 254, 296
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 271, 287
AluI AGCT 2 cut(s) 271, 287
AlwI GGATC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 4 cut(s) 79, 100, 132, 413
AsiGI ACCGGT 1 cut(s) 442
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 101, 413
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 17
BalI TGGCCA 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 136
BfaI CTAG 3 cut(s) 38, 308, 460
BfmI CTRYAG 3 cut(s) 9, 153, 408
BfoI RGCGCY 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 101, 413
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 4 cut(s) 190, 199, 322, 437
Bpu14I TTCGAA 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 442
BseBI CCWGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 4 cut(s) 81, 102, 134, 415
BshTI ACCGGT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 122
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 4 cut(s) 81, 102, 134, 415
BsoBI CYCGRG 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 171
Bsp143I GATC 2 cut(s) 125, 157
BspANI GGCC 4 cut(s) 81, 102, 134, 415
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 442
BssMI GATC 2 cut(s) 125, 157
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 279, 409
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 2 cut(s) 128, 160
BstMBI GATC 2 cut(s) 125, 157
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 3 cut(s) 78, 99, 209
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 3 cut(s) 9, 153, 408
BsuRI GGCC 4 cut(s) 81, 102, 134, 415
BtsIMutI CAGTG 2 cut(s) 284, 355
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 101, 413
Csp6I GTAC 1 cut(s) 22
CspAI ACCGGT 1 cut(s) 442
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 3 cut(s) 144, 383, 394
CviJI RGCY 7 cut(s) 81, 102, 134, 152, 271, 287, 415
CviKI_1 RGCY 7 cut(s) 81, 102, 134, 152, 271, 287, 415
CviQI GTAC 1 cut(s) 22
DpnI GATC 2 cut(s) 127, 159
DpnII GATC 2 cut(s) 125, 157
EaeI YGGCCR 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 17
EcoO109I RGGNCCY 2 cut(s) 101, 413
EcoRII CCWGG 1 cut(s) 134
FaeI CATG 3 cut(s) 147, 386, 397
FaiI YATR 6 cut(s) 145, 165, 236, 370, 384, 395
FalI AAGNNNNNCTT 6 cut(s) 35, 67, 206, 238, 276, 308
FatI CATG 3 cut(s) 143, 382, 393
FspBI CTAG 3 cut(s) 38, 308, 460
GlaI GCGC 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 4 cut(s) 81, 102, 134, 415
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 356
Hin1II CATG 3 cut(s) 147, 386, 397
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 4 cut(s) 250, 311, 345, 434
HpaII CCGG 1 cut(s) 443
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 433
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 279, 409
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 9 cut(s) 11, 93, 179, 203, 212, 230, 282, 318, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 99, 209
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 3 cut(s) 147, 386, 397
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 125, 157
LpnPI CCDG 4 cut(s) 84, 121, 148, 456
LweI GCATC 4 cut(s) 190, 199, 322, 437
MaeI CTAG 3 cut(s) 38, 308, 460
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 109, 218, 455
MalI GATC 2 cut(s) 127, 159
MboI GATC 2 cut(s) 125, 157
MboII GAAGA 2 cut(s) 277, 400
MlsI TGGCCA 1 cut(s) 134
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 3 cut(s) 142, 386, 389
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 78, 99, 209
NdeII GATC 2 cut(s) 125, 157
NlaIII CATG 3 cut(s) 147, 386, 397
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 147
NspV TTCGAA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 81
PciI ACATGT 1 cut(s) 143
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 250, 311, 345, 434
PinAI ACCGGT 1 cut(s) 442
PscI ACATGT 1 cut(s) 143
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspPI GGNCC 2 cut(s) 101, 413
PstI CTGCAG 1 cut(s) 13
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
Sau3AI GATC 2 cut(s) 125, 157
Sau96I GGNCC 2 cut(s) 101, 413
ScrFI CCNGG 1 cut(s) 136
SetI ASST 4 cut(s) 273, 289, 324, 378
SfaNI GCATC 4 cut(s) 190, 199, 322, 437
SfcI CTRYAG 3 cut(s) 9, 153, 408
SfuI TTCGAA 1 cut(s) 171
SseBI AGGCCT 1 cut(s) 81
SspMI CTAG 3 cut(s) 38, 308, 460
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 279, 409
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 171, 447
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 4 cut(s) 250, 311, 345, 434
TscAI CASTG 2 cut(s) 284, 355
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 357, 409, 410
TspRI CASTG 2 cut(s) 284, 355
XceI RCATGY 1 cut(s) 147
XspI CTAG 3 cut(s) 38, 308, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.