Rmu_sc0026241.1_g000001

Proline-rich protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026241.1
Physical Location & Seq
Forward (+)
1 .. 473
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026241.1_g000001.1.cds

Sequence Viewer

Length: 338 bp
gatcggtggccaggataacatgtgaggctgtagatgaatatgggttcgaaactgcaccaatcactattttgagtgatgcaactgatgcaaagggttacttccttgcaacaatatctccatttgagattcaaaacaacaagaagaagctgacacagtgcaaagcttttcttgaactctctccactagattcttgcaacgttctcacagatgcaaacaatggaatcagtggcgctctactcacttcatatcacctcctccatgagaagaacatgaagttatttactgtagggcctttcattttcgcatcagaatctaaaccggtcgataatggttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.12

Weight (kDa)

4.99

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 19
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 130, 172
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 147, 163
AluI AGCT 2 cut(s) 147, 163
AoxI GGCC 2 cut(s) 8, 289
AsiGI ACCGGT 1 cut(s) 318
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 47
BalI TGGCCA 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 12
BfaI CTAG 2 cut(s) 184, 336
BfmI CTRYAG 2 cut(s) 29, 284
BfoI RGCGCY 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 66, 75, 198, 313
Bpu14I TTCGAA 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse118I RCCGGY 1 cut(s) 318
BseBI CCWGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 10, 291
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 319
BsnI GGCC 2 cut(s) 10, 291
Bsp119I TTCGAA 1 cut(s) 47
BspANI GGCC 2 cut(s) 10, 291
BspT104I TTCGAA 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 155, 285
BstAPI GCANNNNNTGC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 4
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 2 cut(s) 29, 284
BsuRI GGCC 2 cut(s) 10, 291
BtsIMutI CAGTG 2 cut(s) 160, 231
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 289
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 3 cut(s) 20, 259, 270
CviJI RGCY 5 cut(s) 10, 28, 147, 163, 291
CviKI_1 RGCY 5 cut(s) 10, 28, 147, 163, 291
DpnI GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 23, 262, 273
FaiI YATR 5 cut(s) 21, 41, 246, 260, 271
FalI AAGNNNNNCTT 4 cut(s) 82, 114, 152, 184
FatI CATG 3 cut(s) 19, 258, 269
FspBI CTAG 2 cut(s) 184, 336
GlaI GCGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 10, 291
HapII CCGG 1 cut(s) 319
HhaI GCGC 1 cut(s) 232
Hin1II CATG 3 cut(s) 23, 262, 273
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 4 cut(s) 126, 187, 221, 310
HpaII CCGG 1 cut(s) 319
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 155, 285
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 7 cut(s) 55, 79, 88, 106, 158, 194, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 23, 262, 273
HspAI GCGC 1 cut(s) 230
LpnPI CCDG 2 cut(s) 24, 332
LweI GCATC 4 cut(s) 66, 75, 198, 313
MaeI CTAG 2 cut(s) 184, 336
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 94, 331
MalI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 153, 276
MlsI TGGCCA 1 cut(s) 10
MluNI TGGCCA 1 cut(s) 10
MnlI CCTC 3 cut(s) 18, 262, 265
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
Msp20I TGGCCA 1 cut(s) 10
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 85
NlaIII CATG 3 cut(s) 23, 262, 273
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 47
PciI ACATGT 1 cut(s) 19
PfeI GAWTC 4 cut(s) 126, 187, 221, 310
PinAI ACCGGT 1 cut(s) 318
PscI ACATGT 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 12
SetI ASST 4 cut(s) 149, 165, 200, 254
SfaNI GCATC 4 cut(s) 66, 75, 198, 313
SfcI CTRYAG 2 cut(s) 29, 284
SfuI TTCGAA 1 cut(s) 47
SspMI CTAG 2 cut(s) 184, 336
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 155, 285
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 47, 323
TfiI GAWTC 4 cut(s) 126, 187, 221, 310
TscAI CASTG 2 cut(s) 160, 231
TspDTI ATGAA 4 cut(s) 50, 233, 285, 286
TspRI CASTG 2 cut(s) 160, 231
XceI RCATGY 1 cut(s) 23
XspI CTAG 2 cut(s) 184, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.