Rorug06G0244500

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015856
Physical Location & Seq
Reverse (-)
39052185 .. 39056180
3996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0244500.1

Sequence Viewer

Length: 891 bp
ATGGAGTGCTCAAATGCAAATGGGGTAGAACATCCATGTACAGTGTTGTACAGGACAGAACATTGGAATCTTCCTGCCGGTGTGCCTTTCGCACACCTATACCTCAATCGCTTCTCGGAGCTTTTGGTTCATAAGCCTGGTGAAGGCCTCCTACTCAATCTCCTTGCAACAATTCTTTCACCTATGAGATGGGCATTTTCAAAATTTGTTGAAAGCTACATAGATAAGAAGCTTGGATTATCCAAGTATGGAATGGTACCTAAGCATAGTTTCCTTCAAGATATTAGTTCCTGTCTGATCTCAGCCATGCCTGAAAAATTCTATGACCGAGTCCAAGAAGGAAGCATTTTACTTAAGAAATCTCCCAAAAGCTTCAGCTTTTGCCGAGAAGGCATTTTGGTTGAAGGAGAAAACTCCCTTGTAAAGACAGATTTGGTCATATTGGCTACTGGATTTAGAGGTGATGAGAATCTTAAAGACATCTTTGTGTCACCAACATTTCAAGACAACATAGCTGGATCACCTACGTCCATTTTACCTCTCTACAGGGGATGCATCCATGGACGAATTCCACAACTAGCTGTAATTGGATTCGGCGTCAGTATCTCAAACTTGTACACATCCGAGATGAGGTGCAGATGGCTAGCAGAGCTTCTTGGAGGCACATTCAAGGTACCAAGCATAAAAGAAACGGAGAAAGATGTGAAACAATGGGATGAGTATGCCAAGCGATACTCCAGAAAATACTACTGGAGATCATGCATCGGAGCGCTTCATATATGGTACAATGACCAATTGTGCAAGGATATGGGATGGAATCCCAAAAGGAAGAAGGGACTTCTTGCTGAACTATTTGAGCCTTATGGCCCAACGGATTATATTTCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

296

Amino Acids

33.7

Weight (kDa)

8.65

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 67 - 275 2.5e-07 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 256, 673
AccB1I GGYRCC 2 cut(s) 256, 673
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 3 cut(s) 203, 317, 567
AcuI CTGAAG 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 6 cut(s) 40, 50, 258, 617, 675, 785
AfeI AGCGCT 1 cut(s) 771
AfiI CCNNNNNNNGG 2 cut(s) 143, 630
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 6 cut(s) 201, 212, 278, 404, 503, 670
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 8 cut(s) 121, 216, 232, 372, 378, 515, 581, 652
AluI AGCT 8 cut(s) 121, 216, 232, 372, 378, 515, 581, 652
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 771
AoxI GGCC 2 cut(s) 145, 865
ApoI RAATTY 3 cut(s) 203, 317, 567
Asp718I GGTACC 2 cut(s) 256, 673
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 1 cut(s) 866
AsuHPI GGTGA 5 cut(s) 152, 171, 473, 483, 513
AsuNHI GCTAGC 1 cut(s) 643
BanI GGYRCC 2 cut(s) 256, 673
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
Bbv12I GWGCWC 1 cut(s) 11
BccI CCATC 3 cut(s) 183, 633, 807
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 2 cut(s) 578, 644
BfmI CTRYAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 773
BfrI CTTAAG 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 2 cut(s) 258, 675
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 3 cut(s) 542, 564, 771
BmtI GCTAGC 1 cut(s) 647
BpmI CTGGAG 2 cut(s) 721, 772
Bpu10I CCTNAGC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 630
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 454, 755
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 6 cut(s) 31, 555, 557, 620, 721, 818
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 143, 630
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 454, 755
BsgI GTGCAG 1 cut(s) 655
BshFI GGCC 2 cut(s) 147, 867
BshNI GGYRCC 2 cut(s) 256, 673
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 2 cut(s) 143, 630
BsmFI GGGAC 1 cut(s) 849
BsnI GGCC 2 cut(s) 147, 867
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 3 cut(s) 38, 48, 615
Bsp143I GATC 3 cut(s) 297, 518, 755
Bsp19I CCATGG 1 cut(s) 559
BspANI GGCC 2 cut(s) 147, 867
BspCNI CTCAG 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 258, 675
BspOI GCTAGC 1 cut(s) 647
BspPI GGATC 1 cut(s) 526
BspT107I GGYRCC 2 cut(s) 256, 673
BspTI CTTAAG 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 3 cut(s) 38, 48, 615
BsrI ACTGG 2 cut(s) 454, 755
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 3 cut(s) 297, 518, 755
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 597
BstAFI CTTAAG 1 cut(s) 353
BstAUI TGTACA 3 cut(s) 38, 48, 615
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 2 cut(s) 261, 301
BstDSI CCRYGG 1 cut(s) 559
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 6 cut(s) 31, 555, 557, 620, 721, 818
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 3 cut(s) 300, 521, 758
BstMBI GATC 3 cut(s) 297, 518, 755
BstMWI GCNNNNNNNGC 2 cut(s) 390, 649
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 544
BsuRI GGCC 2 cut(s) 147, 867
BtgI CCRYGG 1 cut(s) 559
BtsCI GGATG 6 cut(s) 31, 555, 557, 620, 721, 818
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 645
CfoI GCGC 1 cut(s) 772
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 866
CseI GACGC 1 cut(s) 586
Csp6I GTAC 6 cut(s) 39, 49, 257, 616, 674, 784
CviAII CATG 4 cut(s) 36, 307, 560, 759
CviQI GTAC 6 cut(s) 39, 49, 257, 616, 674, 784
DdeI CTNAG 2 cut(s) 261, 301
DpnI GATC 3 cut(s) 299, 520, 757
DpnII GATC 3 cut(s) 297, 518, 755
Eco130I CCWWGG 1 cut(s) 559
Eco147I AGGCCT 1 cut(s) 147
Eco47III AGCGCT 1 cut(s) 771
Eco57I CTGAAG 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 559
EcoT22I ATGCAT 2 cut(s) 557, 764
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 4 cut(s) 39, 310, 563, 762
FaqI GGGAC 1 cut(s) 849
FatI CATG 4 cut(s) 35, 306, 559, 758
FokI GGATG 6 cut(s) 18, 542, 564, 607, 728, 825
FspBI CTAG 2 cut(s) 578, 644
GlaI GCGC 1 cut(s) 771
GsuI CTGGAG 2 cut(s) 721, 772
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 2 cut(s) 147, 867
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 586
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 4 cut(s) 39, 310, 563, 762
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HindIII AAGCTT 2 cut(s) 230, 370
HinfI GANTC 5 cut(s) 67, 330, 469, 591, 817
HpaII CCGG 1 cut(s) 78
HphI GGTGA 5 cut(s) 152, 171, 473, 483, 513
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 4 cut(s) 118, 297, 625, 767
Hpy188III TCNNGA 3 cut(s) 278, 503, 738
Hpy8I GTNNAC 1 cut(s) 618
HpyAV CCTTC 6 cut(s) 137, 284, 332, 383, 398, 826
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 6 cut(s) 17, 167, 555, 636, 762, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 649
HpyF3I CTNAG 2 cut(s) 261, 301
HpySE526I ACGT 1 cut(s) 527
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 4 cut(s) 39, 310, 563, 762
HspAI GCGC 1 cut(s) 770
KpnI GGTACC 2 cut(s) 260, 677
Kzo9I GATC 3 cut(s) 297, 518, 755
LmnI GCTCC 2 cut(s) 118, 767
LweI GCATC 3 cut(s) 542, 564, 771
MaeI CTAG 2 cut(s) 578, 644
MaeII ACGT 1 cut(s) 527
MaeIII GTNAC 1 cut(s) 489
MalI GATC 3 cut(s) 299, 520, 757
MboI GATC 3 cut(s) 297, 518, 755
MboII GAAGA 2 cut(s) 62, 841
MfeI CAATTG 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 6 cut(s) 171, 203, 317, 567, 585, 794
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 6 cut(s) 113, 158, 452, 549, 624, 653
Mph1103I ATGCAT 2 cut(s) 557, 764
MseI TTAA 3 cut(s) 354, 474, 889
MslI CAYNNNNRTG 1 cut(s) 485
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 794
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 390, 649
NcoI CCATGG 1 cut(s) 559
NdeII GATC 3 cut(s) 297, 518, 755
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 4 cut(s) 39, 310, 563, 762
NlaIV GGNNCC 2 cut(s) 258, 675
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 489
NsiI ATGCAT 2 cut(s) 557, 764
PceI AGGCCT 1 cut(s) 147
PfeI GAWTC 4 cut(s) 67, 469, 591, 817
PflFI GACNNNGTC 1 cut(s) 329
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 258, 675
PspPI GGNCC 1 cut(s) 866
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 6 cut(s) 40, 50, 258, 617, 675, 785
RsaNI GTAC 6 cut(s) 39, 49, 257, 616, 674, 784
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 3 cut(s) 354, 474, 889
Sau3AI GATC 3 cut(s) 297, 518, 755
Sau96I GGNCC 1 cut(s) 866
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 3 cut(s) 542, 564, 771
SfcI CTRYAG 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 6 cut(s) 171, 203, 317, 567, 585, 794
SseBI AGGCCT 1 cut(s) 147
SspMI CTAG 2 cut(s) 578, 644
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 530
TaqII GACCGA 1 cut(s) 342
TasI AATT 6 cut(s) 171, 203, 317, 567, 585, 794
TatI WGTACW 3 cut(s) 38, 48, 615
TfiI GAWTC 4 cut(s) 67, 469, 591, 817
Tru1I TTAA 3 cut(s) 354, 474, 889
Tru9I TTAA 3 cut(s) 354, 474, 889
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 2 cut(s) 119, 764
TspGWI ACGGA 2 cut(s) 707, 887
TspRI CASTG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 3 cut(s) 203, 317, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 2 cut(s) 578, 644
Zsp2I ATGCAT 2 cut(s) 557, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.