RLG00000011872

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015856
Physical Location & Seq
Forward (+)
13456035 .. 13456812
778 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011872

Sequence Viewer

Length: 477 bp
ATGGTGGTTACGGTTTCTGCAGAACCTGAGTACAAGAAACCCAAACTAGAAAAGGAGAACTTACTATCAACCATTATGGGCATTCAAGGCCTTGTGTATGTGTATTGCAAATCAGGTCCTAAAGTCACTCCCCTTGAAGGATCGGTGGCCAGGATAACATGTGAGGCTGTAGATGAATATGGGTTCGAAACTGCACCAATCACTATTTTGAGTGATGCAACTGATGCAAAGGGTTACTTCCTTGCAACAATATCTCCATTTGAGATTCAAAACAAGAAGAAGAAACTGACACAGTGCAAAGCTTTTCTTGAACTCTCTCCACTAGATTCTTGCAACGTTCTCACAGATGCAAGCAATGGAATCAGTGGCGCTCTACTCACTTCATATCACCTCCTCCATGAGAAGAACATGAAGTTATTTACTGTAGGGCCTTTCATTTTTGCATCAGAATCTAAACCGGTCGATAATGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

159

Amino Acids

17.26

Weight (kDa)

5.71

Isoelectric Point (pI)

18.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 33 - 123 7.7e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 336
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 86, 137, 269, 311
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 3 cut(s) 88, 147, 428
AsiGI ACCGGT 1 cut(s) 457
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 116, 428
AsuHPI GGTGA 1 cut(s) 380
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 151
BfaI CTAG 3 cut(s) 47, 323, 475
BfmI CTRYAG 3 cut(s) 18, 168, 423
BfoI RGCGCY 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 116, 428
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 4 cut(s) 205, 214, 337, 452
Bpu14I TTCGAA 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 3 cut(s) 90, 149, 430
BshTI ACCGGT 1 cut(s) 457
BsiEI CGRYCG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 137
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 3 cut(s) 90, 149, 430
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 1 cut(s) 140
BspANI GGCC 3 cut(s) 90, 149, 430
BspCNI CTCAG 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 148
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 457
BssMI GATC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 13, 294, 424
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 2 cut(s) 87, 224
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 3 cut(s) 18, 168, 423
BsuRI GGCC 3 cut(s) 90, 149, 430
BtsIMutI CAGTG 2 cut(s) 299, 370
Cac8I GCNNGC 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 116, 428
Csp6I GTAC 1 cut(s) 31
CspAI ACCGGT 1 cut(s) 457
CviAII CATG 3 cut(s) 159, 398, 409
CviJI RGCY 5 cut(s) 90, 149, 167, 302, 430
CviKI_1 RGCY 5 cut(s) 90, 149, 167, 302, 430
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 116, 428
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 3 cut(s) 162, 401, 412
FaiI YATR 7 cut(s) 77, 99, 160, 180, 385, 399, 410
FalI AAGNNNNNCTT 6 cut(s) 44, 76, 221, 253, 291, 323
FatI CATG 3 cut(s) 158, 397, 408
FspBI CTAG 3 cut(s) 47, 323, 475
GlaI GCGC 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 3 cut(s) 90, 149, 430
HapII CCGG 1 cut(s) 458
HhaI GCGC 1 cut(s) 371
Hin1II CATG 3 cut(s) 162, 401, 412
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 4 cut(s) 265, 326, 360, 449
HpaII CCGG 1 cut(s) 458
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 13, 294, 424
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 224
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 3 cut(s) 162, 401, 412
HspAI GCGC 1 cut(s) 369
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 39, 99, 136, 163, 471
LweI GCATC 4 cut(s) 205, 214, 337, 452
MaeI CTAG 3 cut(s) 47, 323, 475
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 4 cut(s) 7, 124, 233, 470
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 3 cut(s) 289, 292, 415
MlsI TGGCCA 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 149
MnlI CCTC 3 cut(s) 157, 401, 404
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 87, 224
NdeII GATC 1 cut(s) 140
NlaIII CATG 3 cut(s) 162, 401, 412
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 162
NspV TTCGAA 1 cut(s) 186
PceI AGGCCT 1 cut(s) 90
PciI ACATGT 1 cut(s) 158
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 4 cut(s) 265, 326, 360, 449
PinAI ACCGGT 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 158
Psp1406I AACGTT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 2 cut(s) 116, 428
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 2 cut(s) 116, 428
ScrFI CCNGG 1 cut(s) 151
SetI ASST 5 cut(s) 28, 118, 304, 339, 393
SfaNI GCATC 4 cut(s) 205, 214, 337, 452
SfcI CTRYAG 3 cut(s) 18, 168, 423
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 90
SspMI CTAG 3 cut(s) 47, 323, 475
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 3 cut(s) 13, 294, 424
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 186, 462
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 4 cut(s) 265, 326, 360, 449
TscAI CASTG 2 cut(s) 299, 370
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 189, 372, 424, 425
TspRI CASTG 2 cut(s) 299, 370
VpaK11BI GGWCC 1 cut(s) 116
XceI RCATGY 1 cut(s) 162
XspI CTAG 3 cut(s) 47, 323, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.