FvH4_2g26050

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015856
Physical Location & Seq
Reverse (-)
20980424 .. 20981597
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26050.t1

Sequence Viewer

Length: 525 bp
ATGGCTTTGAATCATTTCATCTCATATGCTAGTTCATTGTTAATCTTGGCAGCAATGGTGGCTGCAGCTTCTGCAAAACCCGAGTATGAGAAACCCAAACTAGAAAAGGAGAACTTACTATCAACTATTATGGGCATTCAAGGTCTTGTTTACTGCAAATCAGGCCCTAAAGTCACTCCCCTTGAAGGATCAGTGGCCAGGATAACATGTGAGGCTGTAGATGAATATGGGTTTCAAGCTGCACCAATCACCATTTTGAGTGATGCAACTGATGAAAGAGGCTACTTCCTTGCAACGTTATCTCCTTTTGAGATTCAAAACAAGAAGAAGAAGCTGACACAGTGCAAAGCTTTTCTTGAACTCTCTCCACTAGATTCTTGCAACGTTCTCACAGATGCAAACAACGGAATCAGTGGCGCTCTACTCACTGCATATCAGCTCCTCCATGAGAAGAACATGAAGTTATTTACTGTAGGGCCTTTTGTTTTCACATCAGAATCTAAACCAGTCGATAATGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

175

Amino Acids

18.9

Weight (kDa)

5.71

Isoelectric Point (pI)

20.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 46 - 139 1.3e-18 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47540
fragaria_vesca FvH4_2g26050
malus_domestica MD03G1291600.v1.1
prunus_persica Prupe.8G264700_v2.0.a1
pyrus_communis pycom03g23100
rosa_chinensis RchiOBHm_Chr6g0294411
rosa_laevigata RLG00000011872
rosa_multiflora Rmu_sc0026241.1_g000001
rosa_roxburghii Rroxscaffold_7G00173390
rosa_rugosa Rorug06G0244500
rosa_samantha Rh6AG356900 Rh6BG363600 Rh6CG370900 Rh6DG357600
rosa_wichuraiana Rw6G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 296, 384
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 6 cut(s) 10, 140, 185, 236, 317, 359
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 5 cut(s) 68, 239, 334, 350, 439
AluI AGCT 5 cut(s) 68, 239, 334, 350, 439
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 3 cut(s) 163, 195, 476
ApeKI GCWGC 4 cut(s) 50, 62, 65, 239
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 2 cut(s) 164, 476
AsuHPI GGTGA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 80
BalI TGGCCA 1 cut(s) 197
BbvI GCAGC 4 cut(s) 49, 62, 77, 226
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 4 cut(s) 30, 101, 371, 523
BfmI CTRYAG 3 cut(s) 63, 216, 471
BfoI RGCGCY 1 cut(s) 420
BisI GCNGC 4 cut(s) 51, 63, 66, 240
BlsI GCNGC 4 cut(s) 52, 64, 67, 241
Bme1390I CCNGG 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 164, 476
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 253, 385
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 4 cut(s) 49, 62, 77, 226
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 3 cut(s) 165, 197, 478
BsiHKCI CYCGRG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 3 cut(s) 165, 197, 478
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 1 cut(s) 188
BspANI GGCC 3 cut(s) 165, 197, 478
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 506
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 342, 472
BstAPI GCANNNNNTGC 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 3 cut(s) 59, 71, 162
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 3 cut(s) 63, 216, 471
BstV1I GCAGC 4 cut(s) 49, 62, 77, 226
BsuRI GGCC 3 cut(s) 165, 197, 478
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 4 cut(s) 198, 347, 418, 426
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 164, 476
CviAII CATG 3 cut(s) 207, 446, 457
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 164, 476
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 3 cut(s) 210, 449, 460
FaiI YATR 9 cut(s) 25, 27, 87, 131, 208, 228, 433, 447, 458
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 339, 371
FatI CATG 3 cut(s) 206, 445, 456
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 51, 63, 66, 240
Fsp4HI GCNGC 4 cut(s) 51, 63, 66, 240
FspBI CTAG 4 cut(s) 30, 101, 371, 523
GlaI GCGC 1 cut(s) 418
GluI GCNGC 4 cut(s) 51, 63, 66, 240
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 3 cut(s) 165, 197, 478
HhaI GCGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 210, 449, 460
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 5 cut(s) 10, 313, 374, 408, 497
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 342, 472
HpyCH4IV ACGT 2 cut(s) 296, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 71, 162
HpySE526I ACGT 2 cut(s) 296, 384
Hsp92II CATG 3 cut(s) 210, 449, 460
HspAI GCGC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 4 cut(s) 147, 184, 211, 519
Lsp1109I GCAGC 4 cut(s) 49, 62, 77, 226
LweI GCATC 2 cut(s) 253, 385
MaeI CTAG 4 cut(s) 30, 101, 371, 523
MaeII ACGT 2 cut(s) 296, 384
MaeIII GTNAC 2 cut(s) 172, 518
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 3 cut(s) 337, 340, 463
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 3 cut(s) 205, 272, 452
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 59, 71, 162
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 188
NlaIII CATG 3 cut(s) 210, 449, 460
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 210
PciI ACATGT 1 cut(s) 206
PctI GAATGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 5 cut(s) 10, 313, 374, 408, 497
PkrI GCNGC 4 cut(s) 52, 64, 67, 241
PscI ACATGT 1 cut(s) 206
Psp1406I AACGTT 2 cut(s) 296, 384
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspPI GGNCC 2 cut(s) 164, 476
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 4 cut(s) 51, 63, 66, 240
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 2 cut(s) 164, 476
ScrFI CCNGG 1 cut(s) 199
SetI ASST 8 cut(s) 70, 145, 241, 299, 336, 352, 387, 441
SfaNI GCATC 2 cut(s) 253, 385
SfcI CTRYAG 3 cut(s) 63, 216, 471
SspMI CTAG 4 cut(s) 30, 101, 371, 523
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 342, 472
TaiI ACGT 2 cut(s) 299, 387
TaqI TCGA 1 cut(s) 510
TfiI GAWTC 5 cut(s) 10, 313, 374, 408, 497
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 4 cut(s) 198, 347, 418, 433
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 4 cut(s) 50, 62, 65, 239
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 5 cut(s) 7, 24, 237, 288, 473
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 4 cut(s) 198, 347, 418, 433
XceI RCATGY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 4 cut(s) 30, 101, 371, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.