Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Forward (+)

19517187 .. 19518913

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGATGCAAGAGGCTAATCAAGGAGGAGGATCGGAGGTTTCTCCGAATCAGACGATTTACATCAACAATCTCAACGAAAAAGTGAAGCTTGATGAGCTGAAGAAATCGCTGAATGCAGTGTTCTCTCAGTTCGGGAAGATACTGGAGATATTGGCGTTTAAGACCTTTAAGCACAAAGGACAAGCTTGGGTAGTCTTCGACAACACCGAGTCTGCTTCCACTGCTATTGCTAAAATGAATAATTTTCCTTTCTACGACAAGGAGATGAGAATACAATATGCCAAAACAAAATCAGATGTTGTTGCCAAGGCCGATGGTACATTTGTTCCTCGCGAGAAGAGAAAGAGACATGAGGAGAAAGGAGGCGGCAAGAAAAAGAAAGACCAGCACCATGATTCTACACAGATGGGCATGCCCATGAACTCAGCATATCCAGGTGTCTATGGAGCTGCACCTCCTCTATCGCAAGTACCATACCCTGGTGGTATGAAACCCAATATGCCCGAGGCACCAGCTCCGCCAAATAATATTCTCTTTGTCCAAAACCTTCCTCACGAGACAACTCCAATGGTGCTTCAGATGTTGTTCTGCCAGTACCAAGGATTTAAGGAAGTTAGAATGATTGAAGCCAAACCGGGAATCGCCTTTGTGGAGTTTGCTGATGAGATGCAGTCGACGGTCGCAATGCAGGGACTTCAAGGTTTCAAGATTCAGCAAAACCAGATGCTCATCACGTATGCCAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

250

Amino Acids

28.07

Weight (kDa)

9.17

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	20 - 90	2.5e-10	RNA recognition motif
RRM_5	PF13893	171 - 249	2.1e-08	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	179 - 243	2.1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	369, 521
AclWI	GGATC	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	122, 563
AfaI	GTAC	3 cut(s)	322, 474, 599
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	629, 701, 709
AjnI	CCWGG	2 cut(s)	436, 481
AluBI	AGCT	5 cut(s)	91, 100, 188, 452, 518
AluI	AGCT	5 cut(s)	91, 100, 188, 452, 518
Alw26I	GTCTC	2 cut(s)	343, 554
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	639
AvaI	CYCGRG	1 cut(s)	506
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BanI	GGYRCC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	2 cut(s)	311, 403
BciT130I	CCWGG	2 cut(s)	438, 483
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	343, 554
BisI	GCNGC	2 cut(s)	370, 453
BlsI	GCNGC	2 cut(s)	371, 454
Bme1390I	CCNGG	3 cut(s)	438, 483, 639
BmeT110I	CYCGRG	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	3 cut(s)	438, 483, 639
BmsI	GCATC	2 cut(s)	660, 717
BpiI	GAAGAC	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	639
BsaAI	YACGTR	1 cut(s)	738
BsaBI	GATNNNNATC	2 cut(s)	62, 731
BsaJI	CCNNGG	4 cut(s)	309, 481, 507, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	150, 595
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	2 cut(s)	62, 731
BseBI	CCWGG	2 cut(s)	438, 483
BseDI	CCNNGG	4 cut(s)	309, 481, 507, 601
BseJI	GATNNNNATC	2 cut(s)	62, 731
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	143, 441
BseNI	ACTGG	2 cut(s)	150, 595
BseRI	GAGGAG	3 cut(s)	42, 371, 450
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	511
BsiEI	CGRYCG	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	343, 554
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	506
Bsp143I	GATC	1 cut(s)	32
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	2 cut(s)	369, 521
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	142, 440
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	150, 595
BssECI	CCNNGG	4 cut(s)	309, 481, 507, 601
BssMI	GATC	1 cut(s)	32
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	2 cut(s)	309, 601
Bst2BI	CACGAG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	438, 483
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	129, 427
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	343, 554
BstMBI	GATC	1 cut(s)	32
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 224
BstNI	CCWGG	2 cut(s)	438, 483
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	436, 481, 637
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	314
BtsI	GCAGTG	2 cut(s)	126, 222
BtsIMutI	CAGTG	2 cut(s)	126, 222
BtuMI	TCGCGA	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	416
Csp6I	GTAC	3 cut(s)	321, 473, 598
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	4 cut(s)	353, 395, 415, 421
CviJI	RGCY	8 cut(s)	17, 91, 100, 188, 314, 452, 518, 632
CviKI_1	RGCY	8 cut(s)	17, 91, 100, 188, 314, 452, 518, 632
CviQI	GTAC	3 cut(s)	321, 473, 598
DdeI	CTNAG	2 cut(s)	129, 427
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	309, 601
Eco57I	CTGAAG	2 cut(s)	122, 563
Eco88I	CYCGRG	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	436, 481
EcoT14I	CCWWGG	2 cut(s)	309, 601
ErhI	CCWWGG	2 cut(s)	309, 601
FaeI	CATG	4 cut(s)	356, 398, 418, 424
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	4 cut(s)	352, 394, 414, 420
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	2 cut(s)	370, 453
Fsp4HI	GCNGC	2 cut(s)	370, 453
GluI	GCNGC	2 cut(s)	370, 453
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	638
Hin1II	CATG	4 cut(s)	356, 398, 418, 424
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	2 cut(s)	89, 186
HinfI	GANTC	5 cut(s)	49, 212, 398, 642, 712
HpaII	CCGG	1 cut(s)	638
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	5 cut(s)	37, 48, 54, 298, 582
Hpy188III	TCNNGA	4 cut(s)	136, 335, 557, 709
Hpy8I	GTNNAC	1 cut(s)	678
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	5 cut(s)	10, 119, 455, 673, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 224
HpyF3I	CTNAG	2 cut(s)	129, 427
HpySE526I	ACGT	1 cut(s)	737
Hsp92II	CATG	4 cut(s)	356, 398, 418, 424
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	449, 523
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	2 cut(s)	660, 717
MaeII	ACGT	1 cut(s)	737
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	4 cut(s)	115, 151, 190, 352
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	221
MseI	TTAA	3 cut(s)	162, 171, 609
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	3 cut(s)	438, 483, 639
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	438, 483
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	97, 224
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	4 cut(s)	356, 398, 418, 424
NlaIV	GGNNCC	1 cut(s)	513
NruI	TCGCGA	1 cut(s)	336
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	4 cut(s)	49, 398, 642, 712
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	371, 454
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	436, 481
PspGI	CCWGG	2 cut(s)	436, 481
PspN4I	GGNNCC	1 cut(s)	513
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	3 cut(s)	322, 474, 599
RsaNI	GTAC	3 cut(s)	321, 473, 598
RseI	CAYNNNNRTG	1 cut(s)	419
SalI	GTCGAC	1 cut(s)	676
SaqAI	TTAA	3 cut(s)	162, 171, 609
SatI	GCNGC	2 cut(s)	370, 453
Sau3AI	GATC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	438, 483, 639
SfaNI	GCATC	2 cut(s)	660, 717
SmiMI	CAYNNNNRTG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	2 cut(s)	369, 521
SspI	AATATT	1 cut(s)	532
StyD4I	CCNGG	3 cut(s)	436, 481, 637
StyI	CCWWGG	2 cut(s)	309, 601
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	201, 677
TasI	AATT	1 cut(s)	244
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	4 cut(s)	49, 398, 642, 712
Tru1I	TTAA	3 cut(s)	162, 171, 609
Tru9I	TTAA	3 cut(s)	162, 171, 609
TscAI	CASTG	2 cut(s)	126, 229
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	254, 437, 506
TspRI	CASTG	2 cut(s)	126, 229
Van91I	CCANNNNNTGG	1 cut(s)	482
XceI	RCATGY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.