Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Reverse (-)

20856498 .. 20859538

Gene Structure 3041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGAGAGAACAACAGCGGCAGCGAAGTTCCGGCGAATCAGACGATCTACATCAACAACCTGAACGAGAAAATCAAGCTCGACGAATTGAAGAAGACGCTGCACGCCATGTTCTCTCAGTTCGGGAAGGTTCTGGATGTGCTGGCCTTCAAGACGCTCAAGCACAAAGGCCAAGCTTGGGTCGTCTTCGAGGACGTGTCTTCTGCCACCAATGCCATTCGCCAAATGCAGAGCTTCCCTTTCTACGACAAGCCCATGAAAATACAATACGCCAAGACGAAATCAGATATAATAGCAAAGGCCGATGGTACTTTTGTTCCGCGTGAAAGACGAAAGAGGCACGAGGAGAAGGGGAGAAAACGGAAAGAGCAGCAGGATGCTAACCAAGCCGGAATGGTTCTCAATCCTGCTTATCCCGGTGCCTATGGTGGAGCACCTCCGCTCTCCCAAATACCATATCCTGGTGGTGTGAAATCTATGGTGCCCGAGGCCCCTGCTCCACCAAACAACATTCTTTTTGTTCAGAATCTTCCTCATGAGGCGACTTCCGCCATGCTGCAAATGCTCTTCTGTCAATACCCTGGTTTTAAGGAGGTTAGAATGGTGGAAGCAAAACCAGGTATTGCTTTTGTGGAATATGAAAATGAGATGCAATCAACAATGGCAATGCAGAACCTCCAGGCTTTTAAGGTGACACCACAGAATTCAATGTTGATTACATATGCAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

245

Amino Acids

27.42

Weight (kDa)

9.39

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	16 - 86	3.4e-10	RNA recognition motif
RRM_5	PF13893	164 - 233	5.6e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	172 - 231	3.7e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	419, 481
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccBSI	CCGCTC	1 cut(s)	442
AccII	CGCG	1 cut(s)	322
AciI	CCGC	4 cut(s)	18, 320, 440, 549
AcsI	RAATTY	1 cut(s)	703
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	178, 461
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	3 cut(s)	91, 151, 708
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	4 cut(s)	460, 580, 616, 678
AluBI	AGCT	3 cut(s)	79, 176, 234
AluI	AGCT	3 cut(s)	79, 176, 234
Alw21I	GWGCWC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	4 cut(s)	144, 169, 300, 489
ApeKI	GCWGC	4 cut(s)	21, 100, 370, 556
ApoI	RAATTY	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	486
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BanI	GGYRCC	2 cut(s)	419, 481
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	3 cut(s)	101, 178, 192
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	33, 87, 382, 543
BccI	CCATC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	4 cut(s)	462, 582, 618, 680
BcnI	CCSGG	1 cut(s)	417
BisI	GCNGC	5 cut(s)	19, 22, 101, 371, 557
BlsI	GCNGC	5 cut(s)	20, 23, 102, 372, 558
Bme1390I	CCNGG	5 cut(s)	417, 462, 582, 618, 680
BmeT110I	CYCGRG	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	3 cut(s)	421, 483, 492
BmrFI	CCNGG	5 cut(s)	417, 462, 582, 618, 680
BmsI	GCATC	2 cut(s)	367, 639
BpiI	GAAGAC	3 cut(s)	101, 178, 192
BpmI	CTGGAG	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	486, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 461
Bse3DI	GCAATG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	4 cut(s)	462, 582, 618, 680
BseDI	CCNNGG	2 cut(s)	486, 580
BseGI	GGATG	2 cut(s)	142, 382
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	178, 461
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	4 cut(s)	33, 87, 382, 543
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	146, 171, 302, 491
BshNI	GGYRCC	2 cut(s)	419, 481
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	32, 390, 417
BslI	CCNNNNNNNGG	2 cut(s)	178, 461
BsnI	GGCC	4 cut(s)	146, 171, 302, 491
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	436, 486
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	4 cut(s)	18, 320, 440, 549
BspANI	GGCC	4 cut(s)	146, 171, 302, 491
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	3 cut(s)	421, 483, 492
BspQI	GCTCTTC	1 cut(s)	572
BspT107I	GGYRCC	2 cut(s)	419, 481
BsrBI	CCGCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	672
BssECI	CCNNGG	2 cut(s)	486, 580
BssMI	GATC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	4 cut(s)	462, 582, 618, 680
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	105, 144
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	142, 382
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 386, 548, 562
BstNI	CCWGG	4 cut(s)	462, 582, 618, 680
BstSCI	CCNGG	5 cut(s)	415, 460, 580, 616, 678
BstSLI	GKGCMC	1 cut(s)	486
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	33, 87, 382, 543
BstV2I	GAAGAC	3 cut(s)	101, 178, 192
BsuRI	GGCC	4 cut(s)	146, 171, 302, 491
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	142, 382
Cac8I	GCNNGC	2 cut(s)	105, 144
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	2 cut(s)	106, 163
CsiI	ACCWGGT	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	4 cut(s)	109, 256, 536, 553
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EciI	GGCGGA	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	4 cut(s)	460, 580, 616, 678
FaeI	CATG	4 cut(s)	112, 259, 539, 556
FatI	CATG	4 cut(s)	108, 255, 535, 552
FauNDI	CATATG	1 cut(s)	721
Fnu4HI	GCNGC	5 cut(s)	19, 22, 101, 371, 557
FokI	GGATG	2 cut(s)	149, 389
Fsp4HI	GCNGC	5 cut(s)	19, 22, 101, 371, 557
GluI	GCNGC	5 cut(s)	19, 22, 101, 371, 557
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	4 cut(s)	146, 171, 302, 491
HapII	CCGG	3 cut(s)	32, 390, 417
HgaI	GACGC	2 cut(s)	106, 163
Hin1II	CATG	4 cut(s)	112, 259, 539, 556
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	37, 526
HpaII	CCGG	3 cut(s)	32, 390, 417
HphI	GGTGA	1 cut(s)	703
Hpy188I	TCNGA	3 cut(s)	42, 286, 525
Hpy188III	TCNNGA	4 cut(s)	124, 134, 151, 536
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	121, 157, 343
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	103, 229, 559, 652, 670, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 386, 548, 562
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	112, 259, 539, 556
Kzo9I	GATC	1 cut(s)	45
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	2 cut(s)	431, 502
Lsp1109I	GCAGC	4 cut(s)	33, 87, 382, 543
LweI	GCATC	2 cut(s)	367, 639
MabI	ACCWGGT	1 cut(s)	616
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	1 cut(s)	47
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	1 cut(s)	45
MboII	GAAGA	6 cut(s)	103, 106, 178, 192, 521, 559
MhlI	GDGCHC	2 cut(s)	436, 486
MluCI	AATT	2 cut(s)	86, 703
MnlI	CCTC	9 cut(s)	184, 330, 337, 447, 481, 532, 543, 586, 686
MseI	TTAA	2 cut(s)	588, 687
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	3 cut(s)	32, 390, 417
MspR9I	CCNGG	5 cut(s)	417, 462, 582, 618, 680
MvaI	CCWGG	4 cut(s)	462, 582, 618, 680
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	4 cut(s)	212, 386, 548, 562
NciI	CCSGG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	4 cut(s)	112, 259, 539, 556
NlaIV	GGNNCC	3 cut(s)	421, 483, 492
NmuCI	GTSAC	1 cut(s)	691
PagI	TCATGA	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	37, 526
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	5 cut(s)	20, 23, 102, 372, 558
Psp6I	CCWGG	4 cut(s)	460, 580, 616, 678
PspGI	CCWGG	4 cut(s)	460, 580, 616, 678
PspN4I	GGNNCC	3 cut(s)	421, 483, 492
PspPI	GGNCC	1 cut(s)	490
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	588, 687
SatI	GCNGC	5 cut(s)	19, 22, 101, 371, 557
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	490
ScrFI	CCNGG	5 cut(s)	417, 462, 582, 618, 680
SduI	GDGCHC	2 cut(s)	436, 486
SexAI	ACCWGGT	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	367, 639
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	86, 703
SsiI	CCGC	4 cut(s)	18, 320, 440, 549
StyD4I	CCNGG	5 cut(s)	415, 460, 580, 616, 678
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	81, 189
TasI	AATT	2 cut(s)	86, 703
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	37, 526
Tru1I	TTAA	2 cut(s)	588, 687
Tru9I	TTAA	2 cut(s)	588, 687
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	4 cut(s)	21, 100, 370, 556
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	272, 654
TspGWI	ACGGA	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.