Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Reverse (-)

22939611 .. 22941716

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCGAGAACAACAGCGGCGGAGGCGGCGGCGACGGTGGCGTTGTTGGTGGTGGGGAAGTCTCGGCGAACCAGACGATCTACATCAACAACCTGAACGAGAAAATAAAGCTGGACGAACTGAAAAAGTCGCTTCTGGCGGTGTTCTCGCAGTTCGGGAAGATTGTGGAGGTCTTGGCTTTCAAGACGCTCAAGCACAAAGGCCAAGCCTGGCTCGTCTTCGAGGACGTCTCCTCCGCCACCAAAGCCCTTCACCAAATGCAGGGCTTCCCCTTTTACGACAAGCCCATGAGAATACAATATGCCAAGACGAAATCGGATGTGATAGCAAAGGCTGATGGTACTTTTGTTCCACGCGAAAGACGAAAGAGGCATGAGGAAAAGGGGAGAAAACGAAAAGAGCAACATGATGCGAGCCAAGCCGGAATGGGTGGCGTTCCTGCTTATGCTGGTCCCTATGGTTCAGCACCTCCGCTTTCCCAAATACCGTATCCTGGTGGTGTGAAGTTACCCGAGGCTCCTGCTCCACCAAACAACATACTATTTGTTCAGAATCTTCCGCAGGAGACAACTCCCATGATGCTGCAAATGCTCTTCTGCCAGTATGCTGGTTTTAAGGAGGTTAGAATGGTTGAAGCGAAGCCTGGTATTGCTTTTGTGGAGTATGGAGATGAGATGCAATCAACGGTAGCAATGCAGGAACTCCAAGCTTTTAAGTTGACACCGCAGAGTTCGATGTTGATTACCTATGCCAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

254

Amino Acids

27.76

Weight (kDa)

9.2

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	357
AciI	CCGC	9 cut(s)	18, 21, 27, 30, 140, 237, 473, 560, 725
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	262, 494
AgsI	TTSAA	2 cut(s)	184, 635
AjnI	CCWGG	3 cut(s)	209, 493, 643
AluBI	AGCT	2 cut(s)	112, 710
AluI	AGCT	2 cut(s)	112, 710
Alw26I	GTCTC	3 cut(s)	67, 235, 560
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	3, 202
ApeKI	GCWGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	452
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	3 cut(s)	211, 495, 645
BciVI	GTATCC	1 cut(s)	501
BcoDI	GTCTC	3 cut(s)	67, 235, 560
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	4 cut(s)	19, 28, 31, 584
BlsI	GCNGC	4 cut(s)	20, 29, 32, 585
Bme1390I	CCNGG	3 cut(s)	211, 495, 645
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	454, 519
BmrFI	CCNGG	3 cut(s)	211, 495, 645
BmsI	GCATC	3 cut(s)	400, 570, 666
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 494
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	3 cut(s)	211, 495, 645
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	262, 494
BseMI	GCAATG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	5, 204
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	262, 494
BsmAI	GTCTC	3 cut(s)	67, 235, 560
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	5, 204
BsoBI	CYCGRG	1 cut(s)	512
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	9 cut(s)	18, 21, 27, 30, 140, 237, 473, 560, 725
BspANI	GGCC	2 cut(s)	5, 204
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	454, 519
BspQI	GCTCTTC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	3 cut(s)	211, 495, 645
Bst4CI	ACNGT	3 cut(s)	38, 489, 688
Bst6I	CTCTTC	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	3 cut(s)	67, 235, 560
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 27, 39, 245, 419, 589
BstNI	CCWGG	3 cut(s)	211, 495, 645
BstSCI	CCNGG	3 cut(s)	209, 493, 643
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	5, 204
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	4 cut(s)	289, 374, 407, 577
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	2 cut(s)	36, 226
Eco47I	GGWCC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	512
EcoRII	CCWGG	3 cut(s)	209, 493, 643
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	4 cut(s)	292, 377, 410, 580
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	4 cut(s)	288, 373, 406, 576
Fnu4HI	GCNGC	4 cut(s)	19, 28, 31, 584
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	4 cut(s)	19, 28, 31, 584
GluI	GCNGC	4 cut(s)	19, 28, 31, 584
HaeIII	GGCC	2 cut(s)	5, 204
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	292, 377, 410, 580
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	2 cut(s)	319, 552
Hpy188III	TCNNGA	2 cut(s)	157, 184
Hpy8I	GTNNAC	1 cut(s)	720
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	3 cut(s)	38, 489, 688
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	262, 586, 679, 697
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 27, 39, 245, 419, 589
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	292, 377, 410, 580
Kzo9I	GATC	1 cut(s)	78
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	2 cut(s)	523, 529
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	3 cut(s)	400, 570, 666
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	172, 211, 548, 586
MnlI	CCTC	9 cut(s)	17, 163, 217, 244, 363, 370, 480, 508, 613
MseI	TTAA	2 cut(s)	615, 714
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	3 cut(s)	211, 495, 645
MvaI	CCWGG	3 cut(s)	211, 495, 645
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	6 cut(s)	24, 27, 39, 245, 419, 589
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	4 cut(s)	292, 377, 410, 580
NlaIV	GGNNCC	2 cut(s)	454, 519
NmeAIII	GCCGAG	2 cut(s)	31, 44
PciSI	GCTCTTC	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	20, 29, 32, 585
Psp6I	CCWGG	3 cut(s)	209, 493, 643
PspGI	CCWGG	3 cut(s)	209, 493, 643
PspN4I	GGNNCC	2 cut(s)	454, 519
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	615, 714
SatI	GCNGC	4 cut(s)	19, 28, 31, 584
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	211, 495, 645
SetI	ASST	8 cut(s)	96, 114, 174, 231, 472, 624, 712, 749
SfaNI	GCATC	3 cut(s)	400, 570, 666
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SsiI	CCGC	9 cut(s)	18, 21, 27, 30, 140, 237, 473, 560, 725
StyD4I	CCNGG	3 cut(s)	209, 493, 643
TaaI	ACNGT	3 cut(s)	38, 489, 688
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	222, 734
TauI	GCSGC	3 cut(s)	21, 30, 33
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	615, 714
Tru9I	TTAA	2 cut(s)	615, 714
TseI	GCWGC	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	452
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.