Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471061.1

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1133

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

atgggagagaacaacagcggcacggaggttccggcgaaccagacgatctacatcaacaacctgaacgagaaaatcaagctggacgaattgaagaagacgctgcaggccatgttctcgcagttcggcaaggttctggatgtgctggccttcaagacgctcaagcacaaaggccaagcttgggtcgtcttcgaggacgtctcttctgccaccaatgccattcgccaaatgcagagcttccctttctatgacaagcccatgaaaatacaatatgccaagacgaaatcagatataatagcaaaggccgatggtacgtttgttccacgtgaaagacgaaaaaggcatgaggagaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

117

Amino Acids

13.47

Weight (kDa)

9.58

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AciI	CCGC	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	91, 151
AluBI	AGCT	3 cut(s)	79, 176, 234
AluI	AGCT	3 cut(s)	79, 176, 234
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	4 cut(s)	105, 144, 169, 300
ApeKI	GCWGC	1 cut(s)	100
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	101, 178
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	19, 101
BlsI	GCNGC	2 cut(s)	20, 102
BmiI	GGNNCC	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	101, 178
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	50
BseGI	GGATG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	4 cut(s)	107, 146, 171, 302
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	4 cut(s)	107, 146, 171, 302
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	4 cut(s)	107, 146, 171, 302
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	105
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	105, 144
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	2 cut(s)	101, 178
BsuRI	GGCC	4 cut(s)	107, 146, 171, 302
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	105, 144
CseI	GACGC	2 cut(s)	106, 163
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	109, 256, 341
CviJI	RGCY	8 cut(s)	79, 107, 146, 171, 176, 234, 253, 302
CviKI_1	RGCY	8 cut(s)	79, 107, 146, 171, 176, 234, 253, 302
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	112, 259, 344
FaiI	YATR	6 cut(s)	110, 246, 257, 270, 290, 342
FatI	CATG	3 cut(s)	108, 255, 340
Fnu4HI	GCNGC	2 cut(s)	19, 101
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	19, 101
GluI	GCNGC	2 cut(s)	19, 101
HaeIII	GGCC	4 cut(s)	107, 146, 171, 302
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	2 cut(s)	106, 163
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	112, 259, 344
HindIII	AAGCTT	1 cut(s)	174
HpaII	CCGG	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	134, 151
HpyAV	CCTTC	2 cut(s)	157, 343
HpyCH4IV	ACGT	3 cut(s)	195, 311, 322
HpyCH4V	TGCA	2 cut(s)	103, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	3 cut(s)	195, 311, 322
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	112, 259, 344
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	7 cut(s)	45, 53, 65, 74, 89, 119, 128
Lsp1109I	GCAGC	1 cut(s)	87
MaeII	ACGT	3 cut(s)	195, 311, 322
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	4 cut(s)	103, 106, 178, 192
MluCI	AATT	1 cut(s)	86
MnlI	CCTC	3 cut(s)	19, 184, 337
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	112, 259, 344
NlaIV	GGNNCC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	20, 102
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
Ppu21I	YACGTR	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SatI	GCNGC	2 cut(s)	19, 101
Sau3AI	GATC	1 cut(s)	45
SetI	ASST	9 cut(s)	30, 63, 81, 132, 178, 198, 236, 314, 325
SfcI	CTRYAG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	18
TaiI	ACGT	3 cut(s)	198, 314, 325
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.