Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Forward (+)

42217849 .. 42220166

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1308500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCAGAGAACAACAGCGGAGGCGGAGGCGGCGGCGGCGGTGATGGTGGCGGCGAAGTCGTGGCGAACCAGACGATCTACATCAACAACCTGAACGAGAAAATAAAGCTGGACGAACTGAAAAAGTCGCTTCTGGCTGTGTTCTCGCAGTTCGGGAAGATTGTGGAGGTCTTGGCTTTCAAGACGCTCAAGCACAAAGGTCAAGCCTGGCTCGTCTTCGAGGACGTCTCCTCCGCCACCAAAGCCCTTCACCAGATGCAGGGCTTCCCCTTTTACGACAAGCCTATGAGAATACAATATGCCAAGACAAAATCGGATGTGATAGCAAAGGCTGATGGTACCTTTGTTCCACGTGAAAGACGGAAGAGGCATGAGGAAAAGGGGAAAAAACGAAAAGAGCAACATGATGCAAGCCAAGCCGGAATGCCCATTCCGGGTTACGCTGGTACCTATGGTTCAGCACCTCCGCTTTCCCAAATACCGTATCCCGGTGGTGTGAAGTTACCTGAGGCTCCTGCTCCACCAAACAACATACTTTTTGTGCAGAATCTTCCGCAGGAGACAACTCCCATGATGCTGCAAATGCTCTTCTGCCAGTATGCCGGTTTCAAGGAGGTTAGAATGGTGGAAGCGAAGCCAGGTATTGCTTTTGTGGAGTATGGAGATGAGATGCAATCAACGGTAGCAATGCAGGAACTCCAATCTTTTAAGTTGACACCGCAGAGTTCGATGTTGATTACCTATGCCAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

252

Amino Acids

27.61

Weight (kDa)

9.19

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	26 - 96	5.1e-10	RNA recognition motif
RRM_5	PF13893	171 - 241	2.5e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	179 - 238	2.6e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
Acc65I	GGTACC	2 cut(s)	338, 446
AccB1I	GGYRCC	2 cut(s)	338, 446
AcvI	CACGTG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	340, 448
AfiI	CCNNNNNNNGG	3 cut(s)	259, 434, 488
AgsI	TTSAA	2 cut(s)	181, 610
AjnI	CCWGG	2 cut(s)	206, 637
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	232, 554
ApeKI	GCWGC	1 cut(s)	577
Asp718I	GGTACC	2 cut(s)	338, 446
AsuC2I	CCSGG	2 cut(s)	435, 489
AsuHPI	GGTGA	2 cut(s)	53, 242
AxyI	CCTNAGG	1 cut(s)	507
BaeI	ACNNNNGTAYC	4 cut(s)	330, 363, 430, 463
BanI	GGYRCC	2 cut(s)	338, 446
BbrPI	CACGTG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	2 cut(s)	38, 329
BciT130I	CCWGG	2 cut(s)	208, 639
BciVI	GTATCC	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	435, 489
BcoDI	GTCTC	2 cut(s)	232, 554
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	5 cut(s)	31, 34, 37, 52, 578
BlsI	GCNGC	5 cut(s)	32, 35, 38, 53, 579
Bme1390I	CCNGG	4 cut(s)	208, 435, 489, 639
BmiI	GGNNCC	3 cut(s)	340, 448, 513
BmrFI	CCNGG	4 cut(s)	208, 435, 489, 639
BmsI	GCATC	4 cut(s)	246, 397, 564, 660
BpiI	GAAGAC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	435, 489
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 434, 488
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	595
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	208, 639
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	259, 434, 488
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	564
BsgI	GTGCAG	1 cut(s)	563
BshNI	GGYRCC	2 cut(s)	338, 446
BsiSI	CCGG	4 cut(s)	420, 434, 489, 603
BslI	CCNNNNNNNGG	3 cut(s)	259, 434, 488
BsmAI	GTCTC	2 cut(s)	232, 554
BsmBI	CGTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	340, 448, 513
BspQI	GCTCTTC	1 cut(s)	593
BspT107I	GGYRCC	2 cut(s)	338, 446
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	602
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	208, 639
Bst4CI	ACNGT	2 cut(s)	483, 682
Bst6I	CTCTTC	2 cut(s)	359, 593
BstACI	GRCGYC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	232, 554
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 36, 242, 416, 583
BstNI	CCWGG	2 cut(s)	208, 639
BstSCI	CCNGG	4 cut(s)	206, 433, 487, 637
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	602
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	339, 447
CviAII	CATG	3 cut(s)	371, 404, 571
CviQI	GTAC	2 cut(s)	339, 447
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	359, 593
EarI	CTCTTC	2 cut(s)	359, 593
EciI	GGCGGA	2 cut(s)	39, 223
Eco72I	CACGTG	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	206, 637
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	3 cut(s)	374, 407, 574
FatI	CATG	3 cut(s)	370, 403, 570
Fnu4HI	GCNGC	5 cut(s)	31, 34, 37, 52, 578
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	5 cut(s)	31, 34, 37, 52, 578
GluI	GCNGC	5 cut(s)	31, 34, 37, 52, 578
HapII	CCGG	4 cut(s)	420, 434, 489, 603
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	374, 407, 574
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	4 cut(s)	420, 434, 489, 603
HphI	GGTGA	2 cut(s)	53, 242
Hpy166II	GTNNAC	1 cut(s)	714
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	154, 181
Hpy8I	GTNNAC	1 cut(s)	714
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	483, 682
HpyCH4IV	ACGT	2 cut(s)	225, 352
HpyCH4V	TGCA	6 cut(s)	259, 410, 544, 580, 673, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 36, 242, 416, 583
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	225, 352
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	374, 407, 574
KpnI	GGTACC	2 cut(s)	342, 450
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	517, 523
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	4 cut(s)	246, 397, 564, 660
MaeII	ACGT	2 cut(s)	225, 352
MaeIII	GTNAC	2 cut(s)	437, 501
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	5 cut(s)	169, 208, 376, 542, 580
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	420, 434, 489, 603
MspR9I	CCNGG	4 cut(s)	208, 435, 489, 639
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	208, 639
MwoI	GCNNNNNNNGC	5 cut(s)	30, 36, 242, 416, 583
NciI	CCSGG	2 cut(s)	435, 489
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	374, 407, 574
NlaIV	GGNNCC	3 cut(s)	340, 448, 513
PciSI	GCTCTTC	1 cut(s)	593
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	5 cut(s)	32, 35, 38, 53, 579
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	206, 637
PspCI	CACGTG	1 cut(s)	353
PspGI	CCWGG	2 cut(s)	206, 637
PspN4I	GGNNCC	3 cut(s)	340, 448, 513
PsrI	GAACNNNNNNTAC	2 cut(s)	439, 471
RsaI	GTAC	2 cut(s)	340, 448
RsaNI	GTAC	2 cut(s)	339, 447
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	5 cut(s)	31, 34, 37, 52, 578
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	4 cut(s)	208, 435, 489, 639
SfaNI	GCATC	4 cut(s)	246, 397, 564, 660
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
StyD4I	CCNGG	4 cut(s)	206, 433, 487, 637
TaaI	ACNGT	2 cut(s)	483, 682
TaiI	ACGT	2 cut(s)	228, 355
TaqI	TCGA	2 cut(s)	219, 728
TauI	GCSGC	4 cut(s)	33, 36, 39, 54
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TseI	GCWGC	1 cut(s)	577
TspGWI	ACGGA	1 cut(s)	376
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.