Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Reverse (-)

22129419 .. 22132232

Gene Structure 2814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAGAGAACAATAGCGGCAGCGAAGTTCCGGCGAACCAGACCATCTACATCAACAATCTGAACGAGAAAATCAAGCTCGATGAATTGAAAAAGTCGCTTCTCGCGGTCTTCTCGCAGTTCGGGAAGATACTGGACGTCTTAGCTTTCAAGACGCTCAAGCACAAAGGCCAAGCTTGGCTTGTCTTCGAGGACGTCTCTTCCGCCACCAAAGCCATTCAACAAATGCAAGGCTTCCCCTTTTATGACAAGCCTATGAGAATACAATATGCCAAGACAAAATCAGATGTAATAGCAAAGGCTGATGGTACTTTTGTTCCACGTGAAAGACGAAAGAGGCATGAAGACAAGGGGAAAAAGCGAAAAGAGCAACATGATGCTAGCCAAGCCGGAATGGGTGTGAATCCTGCTTACGCTGGTGCGTATGGTGCAGCACCTCCTCTCTCCCAAATACCGTATCCCGGTGGTGTGAAGTTACCTGAGGCTCCTGCTCCGCCAAACAACATACTTTTTGTTCAGAATCTTCCTCAGGATACAACTCCCATGATGTTGCAAATGCTCTTCTGCCAGTACGCTGGTTTTAAGGAGGTTAGAATGGTGGAAACGAAGCCAGGTATTGCTTTTGTGGAGTTTGGAGATGAGATGCAATCTACAGTAGCAATGCAGGCACTCCAGGGTTTTAAGATGACACCGCAGAATTCAATGTTGATTACCTATGCCAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

9.39

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	141, 198
AccII	CGCG	1 cut(s)	107
AciI	CCGC	5 cut(s)	18, 107, 204, 494, 692
AcsI	RAATTY	1 cut(s)	697
AcvI	CACGTG	1 cut(s)	323
AcyI	GRCGYC	2 cut(s)	138, 195
AfaI	GTAC	2 cut(s)	310, 572
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	4 cut(s)	91, 151, 221, 702
AjnI	CCWGG	2 cut(s)	610, 672
AluBI	AGCT	3 cut(s)	79, 146, 176
AluI	AGCT	3 cut(s)	79, 146, 176
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	21, 431
ApoI	RAATTY	1 cut(s)	697
AsuC2I	CCSGG	1 cut(s)	462
AsuNHI	GCTAGC	1 cut(s)	380
AxyI	CCTNAGG	2 cut(s)	480, 528
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	3 cut(s)	103, 178, 351
BbvI	GCAGC	2 cut(s)	33, 443
BccI	CCATC	2 cut(s)	53, 299
BciT130I	CCWGG	2 cut(s)	612, 674
BciVI	GTATCC	2 cut(s)	468, 526
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	2 cut(s)	468, 526
BisI	GCNGC	3 cut(s)	19, 22, 432
BlsI	GCNGC	3 cut(s)	20, 23, 433
Bme1390I	CCNGG	3 cut(s)	462, 612, 674
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	3 cut(s)	462, 612, 674
BmsI	GCATC	2 cut(s)	367, 633
BmtI	GCTAGC	1 cut(s)	384
BpiI	GAAGAC	3 cut(s)	103, 178, 351
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	2 cut(s)	138, 195
BsaJI	CCNNGG	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	138, 568
Bse21I	CCTNAGG	2 cut(s)	480, 528
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	612, 674
BseDI	CCNNGG	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	471, 542
BseNI	ACTGG	2 cut(s)	138, 568
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	33, 443
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	32, 390, 462
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	171
BspACI	CCGC	5 cut(s)	18, 107, 204, 494, 692
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	472, 541
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	486
BspOI	GCTAGC	1 cut(s)	384
BspQI	GCTCTTC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	138, 568
BssECI	CCNNGG	1 cut(s)	673
BssNI	GRCGYC	2 cut(s)	138, 195
Bst2UI	CCWGG	2 cut(s)	612, 674
Bst4CI	ACNGT	2 cut(s)	456, 655
Bst6I	CTCTTC	2 cut(s)	205, 566
BstACI	GRCGYC	2 cut(s)	138, 195
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	382, 666
BstDEI	CTNAG	3 cut(s)	142, 480, 528
BstFNI	CGCG	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 367, 386, 428, 665
BstNI	CCWGG	2 cut(s)	612, 674
BstSCI	CCNGG	3 cut(s)	460, 610, 672
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	33, 443
BstV2I	GAAGAC	3 cut(s)	103, 178, 351
BstXI	CCANNNNNNTGG	1 cut(s)	575
Bsu36I	CCTNAGG	2 cut(s)	480, 528
BsuI	GTATCC	2 cut(s)	468, 526
BsuRI	GGCC	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	382, 666
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	309, 571
CviAII	CATG	3 cut(s)	341, 374, 544
CviQI	GTAC	2 cut(s)	309, 571
DdeI	CTNAG	3 cut(s)	142, 480, 528
Eam1104I	CTCTTC	2 cut(s)	205, 566
EarI	CTCTTC	2 cut(s)	205, 566
EciI	GGCGGA	2 cut(s)	193, 483
Eco72I	CACGTG	1 cut(s)	323
Eco81I	CCTNAGG	2 cut(s)	480, 528
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	2 cut(s)	610, 672
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	344, 377, 547
FaiI	YATR	9 cut(s)	246, 257, 270, 342, 375, 426, 506, 545, 717
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	3 cut(s)	340, 373, 543
Fnu4HI	GCNGC	3 cut(s)	19, 22, 432
Fsp4HI	GCNGC	3 cut(s)	19, 22, 432
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	19, 22, 432
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	3 cut(s)	32, 390, 462
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	2 cut(s)	138, 195
Hin1II	CATG	3 cut(s)	344, 377, 547
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	403, 520
HpaII	CCGG	3 cut(s)	32, 390, 462
Hpy188I	TCNGA	3 cut(s)	63, 286, 519
Hpy188III	TCNNGA	3 cut(s)	124, 151, 530
HpyCH4III	ACNGT	2 cut(s)	456, 655
HpyCH4IV	ACGT	3 cut(s)	138, 195, 322
HpyCH4V	TGCA	5 cut(s)	229, 431, 553, 646, 664
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 367, 386, 428, 665
HpyF3I	CTNAG	3 cut(s)	142, 480, 528
HpySE526I	ACGT	3 cut(s)	138, 195, 322
Hsp92I	GRCGYC	2 cut(s)	138, 195
Hsp92II	CATG	3 cut(s)	344, 377, 547
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	490, 496
Lsp1109I	GCAGC	2 cut(s)	33, 443
LweI	GCATC	2 cut(s)	367, 633
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	3 cut(s)	138, 195, 322
MaeIII	GTNAC	1 cut(s)	474
MboII	GAAGA	7 cut(s)	103, 139, 178, 192, 356, 515, 553
MluCI	AATT	2 cut(s)	86, 697
MnlI	CCTC	7 cut(s)	184, 330, 447, 450, 475, 537, 580
MseI	TTAA	2 cut(s)	582, 681
MspI	CCGG	3 cut(s)	32, 390, 462
MspR9I	CCNGG	3 cut(s)	462, 612, 674
MvaI	CCWGG	2 cut(s)	612, 674
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	5 cut(s)	212, 367, 386, 428, 665
NciI	CCSGG	1 cut(s)	462
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	344, 377, 547
NlaIV	GGNNCC	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	403, 520
PkrI	GCNGC	3 cut(s)	20, 23, 433
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	610, 672
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	610, 672
PspN4I	GGNNCC	1 cut(s)	486
RsaI	GTAC	2 cut(s)	310, 572
RsaNI	GTAC	2 cut(s)	309, 571
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	582, 681
SatI	GCNGC	3 cut(s)	19, 22, 432
ScrFI	CCNGG	3 cut(s)	462, 612, 674
SfaNI	GCATC	2 cut(s)	367, 633
SfcI	CTRYAG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	86, 697
SsiI	CCGC	5 cut(s)	18, 107, 204, 494, 692
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	460, 610, 672
TaaI	ACNGT	2 cut(s)	456, 655
TaiI	ACGT	3 cut(s)	141, 198, 325
TaqI	TCGA	2 cut(s)	81, 189
TasI	AATT	2 cut(s)	86, 697
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	403, 520
Tru1I	TTAA	2 cut(s)	582, 681
Tru9I	TTAA	2 cut(s)	582, 681
TseI	GCWGC	2 cut(s)	21, 431
TspDTI	ATGAA	2 cut(s)	99, 357
XapI	RAATTY	1 cut(s)	697
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	2 cut(s)	139, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.