Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Reverse (-)

36783158 .. 36785691

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1289700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCGAGAACAACAGCGGCGGCGGCGACGGTGGCGTTGGTGGTGGTGGAGAAGTCTCGGCGAACCAGACGATCTACATCAACAACCTGAGCGAGAAAATAAAGCTGGACGAACTGAAAAAGTCGCTTCTGGCGGTGTTCTCTCAGTTCGGGAAGATTGTGGAGGTCTTGGCTTTCAAGACGCTCAAGCACAAAGGCCAAGCCTGGCTCGTCTTCGAGGACGTCTCCTCCGCCACCAAAGCCCTTCACCAAATGCAGGGCTTCCCCTTTTACGACAAGCCCATGAGAATACAATATGCCAAGACGAAATCAGATGTGATAGCAAAAGCTGATGGTACTTTTGTTCCACGCGAAAGACGAAAGAGGCATGAGGAAAAGGGGAAAAAACGAAAAGAGCAACTTGATGCGAGCCAAGCCGGAATGGGTGGCGTTCCTGCTTATGCTGGTCCCTATGGTTCAGCACCTCCGCTTTCCCAAATACCGTATCCTGGTGGTGTGAAGTTACCTGAGGCTCCTGCTCCACCAAACAACATACTATTTGTTCAGAATCTTCCGCAGGAGACAACTCCCATGATGCTGCAAATGCTCTTCTGCCAGTATGCTGGTTTTAAGGAGGTTAGAATGGTCGAAGCGAAGCCTGGTATTGCTTTTGTGGAGTATGGAGATGAGATGCAATCAACAGTAGCAATGCAGGAACTCCAAGCTTTTAAGTTGACACCGCAGAGTTCGATGTTGATTACCTATGCCAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

252

Amino Acids

27.53

Weight (kDa)

9.19

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	25 - 95	6.2e-10	RNA recognition motif
RRM_5	PF13893	172 - 241	2.9e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	179 - 238	4.3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccII	CGCG	1 cut(s)	351
AciI	CCGC	8 cut(s)	18, 21, 24, 134, 231, 467, 554, 719
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	2 cut(s)	256, 488
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	203, 487, 637
AluBI	AGCT	3 cut(s)	106, 329, 704
AluI	AGCT	3 cut(s)	106, 329, 704
Alw26I	GTCTC	3 cut(s)	61, 229, 554
AoxI	GGCC	2 cut(s)	3, 196
ApeKI	GCWGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	507
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	205, 489, 639
BciVI	GTATCC	1 cut(s)	495
BcoDI	GTCTC	3 cut(s)	61, 229, 554
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	4 cut(s)	19, 22, 25, 578
BlsI	GCNGC	4 cut(s)	20, 23, 26, 579
Bme1390I	CCNGG	3 cut(s)	205, 489, 639
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	448, 513
BmrFI	CCNGG	3 cut(s)	205, 489, 639
BmsI	GCATC	3 cut(s)	394, 564, 660
BpiI	GAAGAC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 488
Bse1I	ACTGG	1 cut(s)	595
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	3 cut(s)	205, 489, 639
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	256, 488
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	3 cut(s)	80, 158, 498
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	5, 198
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	256, 488
BsmAI	GTCTC	3 cut(s)	61, 229, 554
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	5, 198
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	8 cut(s)	18, 21, 24, 134, 231, 467, 554, 719
BspANI	GGCC	2 cut(s)	5, 198
BspCNI	CTCAG	3 cut(s)	81, 157, 499
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	448, 513
BspQI	GCTCTTC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	595
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	3 cut(s)	205, 489, 639
Bst4CI	ACNGT	3 cut(s)	32, 483, 682
Bst6I	CTCTTC	1 cut(s)	593
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	3 cut(s)	89, 144, 507
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	3 cut(s)	61, 229, 554
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 239, 413, 583
BstNI	CCWGG	3 cut(s)	205, 489, 639
BstSCI	CCNGG	3 cut(s)	203, 487, 637
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	602
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	5, 198
Cac8I	GCNNGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	446
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	3 cut(s)	283, 368, 571
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	3 cut(s)	89, 144, 507
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
EciI	GGCGGA	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	446
Eco81I	CCTNAGG	1 cut(s)	507
EcoRII	CCWGG	3 cut(s)	203, 487, 637
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	3 cut(s)	286, 371, 574
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	3 cut(s)	282, 367, 570
Fnu4HI	GCNGC	4 cut(s)	19, 22, 25, 578
Fsp4HI	GCNGC	4 cut(s)	19, 22, 25, 578
GluI	GCNGC	4 cut(s)	19, 22, 25, 578
HaeIII	GGCC	2 cut(s)	5, 198
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	286, 371, 574
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	714
Hpy188I	TCNGA	2 cut(s)	313, 546
Hpy188III	TCNNGA	2 cut(s)	151, 178
Hpy8I	GTNNAC	1 cut(s)	714
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	3 cut(s)	32, 483, 682
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	256, 580, 673, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 239, 413, 583
HpyF3I	CTNAG	3 cut(s)	89, 144, 507
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	286, 371, 574
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	517, 523
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	3 cut(s)	394, 564, 660
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	4 cut(s)	166, 205, 542, 580
MnlI	CCTC	8 cut(s)	157, 211, 238, 357, 364, 474, 502, 607
MseI	TTAA	2 cut(s)	609, 708
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	3 cut(s)	205, 489, 639
MvaI	CCWGG	3 cut(s)	205, 489, 639
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 239, 413, 583
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	3 cut(s)	286, 371, 574
NlaIV	GGNNCC	2 cut(s)	448, 513
NmeAIII	GCCGAG	2 cut(s)	31, 38
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	20, 23, 26, 579
Psp6I	CCWGG	3 cut(s)	203, 487, 637
PspGI	CCWGG	3 cut(s)	203, 487, 637
PspN4I	GGNNCC	2 cut(s)	448, 513
PspPI	GGNCC	1 cut(s)	446
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	609, 708
SatI	GCNGC	4 cut(s)	19, 22, 25, 578
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	205, 489, 639
SfaNI	GCATC	3 cut(s)	394, 564, 660
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	8 cut(s)	18, 21, 24, 134, 231, 467, 554, 719
StyD4I	CCNGG	3 cut(s)	203, 487, 637
TaaI	ACNGT	3 cut(s)	32, 483, 682
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	216, 627, 728
TauI	GCSGC	3 cut(s)	21, 24, 27
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	609, 708
Tru9I	TTAA	2 cut(s)	609, 708
TseI	GCWGC	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	446
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.