Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8441827.1

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 869

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8441827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ctctcccagataccatatcctggtggtgtgaaatctatggtgcctgaggcccctgctccaccaaataatattctttttgttcagaatcttcctcacgaggcaacttccgtgatgctgcaaatgctcttctgtcaataccctggttttaaggaggttagaatggtggaagctaagccaggtattgcttttgtggaatacgaaaatgagatgcaatcatcaatggcaatgcagaacctccaagcttttaaggtaacaccgcagaattcaatgttgatcacctacgcaaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

97

Amino Acids

10.87

Weight (kDa)

6.78

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	267
AjnI	CCWGG	3 cut(s)	19, 139, 175
AluBI	AGCT	2 cut(s)	170, 242
AluI	AGCT	2 cut(s)	170, 242
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	102
BciT130I	CCWGG	3 cut(s)	21, 141, 177
BclI	TGATCA	1 cut(s)	273
BisI	GCNGC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	3 cut(s)	21, 141, 177
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	42, 51
BmrFI	CCNGG	3 cut(s)	21, 141, 177
BmsI	GCATC	2 cut(s)	102, 198
Bpu1102I	GCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	21, 141, 177
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	273
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	42, 51
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	3 cut(s)	21, 141, 177
Bst6I	CTCTTC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	45, 171
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	3 cut(s)	21, 141, 177
BstSCI	CCNGG	3 cut(s)	19, 139, 175
BstV1I	GCAGC	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	49
CviJI	RGCY	4 cut(s)	50, 170, 175, 242
CviKI_1	RGCY	4 cut(s)	50, 170, 175, 242
DdeI	CTNAG	2 cut(s)	45, 171
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	19, 139, 175
FaiI	YATR	2 cut(s)	16, 38
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	118, 211, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	45, 171
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	273
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	9 cut(s)	6, 20, 33, 57, 66, 126, 153, 162, 189
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	2 cut(s)	102, 198
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	2 cut(s)	80, 118
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	5 cut(s)	40, 91, 102, 145, 245
MseI	TTAA	2 cut(s)	147, 246
MspR9I	CCNGG	3 cut(s)	21, 141, 177
MvaI	CCWGG	3 cut(s)	21, 141, 177
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	273
NlaIV	GGNNCC	2 cut(s)	42, 51
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	85
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	19, 139, 175
PspGI	CCWGG	3 cut(s)	19, 139, 175
PspN4I	GGNNCC	2 cut(s)	42, 51
PspPI	GGNCC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	147, 246
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	21, 141, 177
SetI	ASST	7 cut(s)	156, 172, 181, 237, 244, 252, 281
SfaNI	GCATC	2 cut(s)	102, 198
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	1 cut(s)	70
StyD4I	CCNGG	3 cut(s)	19, 139, 175
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	147, 246
Tru9I	TTAA	2 cut(s)	147, 246
TseI	GCWGC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.