Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011967

Physical Location & Seq

Genomic Coordinates Forward (+)

13546393 .. 13549425

Gene Structure 3033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCCACCTTCGAAGTTGAAAAGTATTAGCCCAAACAGAACCATTCATGGCCAGCCCAGCCCATCTCCATCTCTGACTACGCCGTTGGTTAGGGCTCTTCTTCCCATTATTAACAGCCTAATCCAAAGGCCTGGTGCAGTGGGTGCTTTTGCCCTGGAGCTCGATTCAAAGACTCAGCTAAAGCTAAAACCCTTGCTCGGAAATCAAAATTGGCAGAGAAGAAAAAGAAAGAAAGAAGGCATGGGAGAGAACAACAGCGGCACGGAGGTTCCGGCGAACCAGACGATCTACATCAACAACCTGAACGAGAAAATCAAGCTCGACGAATTGAAGAAGACGCTGCACGCCATGTTCTCGCAGTTCGGCAAGGTTCTGGATGTGCTGGCCTTCAAGACGCTCAAGCACAAAGGCCAAGCTTGGGTCGTCTTCGAGGACGTCTCTTCTGCCACCAATGCCATTCGCCAAATGCAGAGCTTCCCTTTCTATGACAAGCCCATGAAAATACAATATGCCAAGACGAAATCAGATATAATAGCAAAGGCTGATGGCACGTTTGTTCCACGTGAAAGACGAAAAAGGCATGAGGAGAAGGGGAAAAAACGGAAAGAGCAGCAGGATGCTAACCAAGCTGGAATGGGTCTCAATCCTGCTTATCCTGGTGCCTATGGTGGAGCACCTCCGCTCTCCCAAATACCATATCCTGGTGGTGTGAAATCTATGGTGCCTGAGGCTCCTGCTCCACCAAATAATATTCTTTTTGTTCAGAATCTCCCTCACGAGGCAACTTCCGTGATGCTGCAAATGCTCTTCTGTCAATACCCGGGTTTTAAGGAGGTTAGAATGGTGGAAGCTAAGCCAGGTATTGCTTTTGTGGAATACGAAAATGAGATGCAATCATCAATGGCAATGCAGAACCTCCAAGCTTTTAAGGTGACACCGCAGAATTCAATGTTGATTACCTACGCAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

324

Amino Acids

36.18

Weight (kDa)

9.85

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 166	5.7e-10	RNA recognition motif
RRM_1	PF00076	252 - 311	6.3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47580
fragaria_vesca	FvH4_2g25850
malus_domestica	MD03G1289700.v1.1 MD11G1308500.v1.1
prunus_persica	Prupe.8G262900_v2.0.a1
pyrus_communis	pycom03g22930 pycom11g26980
rosa_chinensis	RchiOBHm_Chr6g0294181
rosa_laevigata	RLG00000011892
rosa_multiflora	Rmu_co8441827.1_g000001 Rmu_co8471061.1_g000001 Rmu_sc0001521.1_g000043
rosa_roxburghii	Rroxscaffold_7G00173570
rosa_rugosa	Rorug06G0242200
rosa_samantha	Rh6AG354400 Rh6BG361300 Rh6CG368600 Rh6DG355400
rosa_wichuraiana	Rw6G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AccB1I	GGYRCC	2 cut(s)	659, 721
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccBSI	CCGCTC	1 cut(s)	682
AciI	CCGC	3 cut(s)	258, 680, 938
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	943
AcvI	CACGTG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	435
AfiI	CCNNNNNNNGG	4 cut(s)	197, 418, 701, 778
AgsI	TTSAA	5 cut(s)	19, 168, 331, 391, 948
AjnI	CCWGG	5 cut(s)	130, 153, 655, 700, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	9 cut(s)	160, 178, 184, 319, 416, 474, 629, 851, 923
AluI	AGCT	9 cut(s)	160, 178, 184, 319, 416, 474, 629, 851, 923
Alw21I	GWGCWC	2 cut(s)	162, 676
Alw26I	GTCTC	2 cut(s)	442, 644
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	4 cut(s)	49, 128, 384, 409
ApeKI	GCWGC	3 cut(s)	340, 610, 796
ApoI	RAATTY	1 cut(s)	943
AsuC2I	CCSGG	2 cut(s)	821, 822
AsuHPI	GGTGA	1 cut(s)	943
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	726
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	659, 721
BanII	GRGCYC	2 cut(s)	97, 162
BauI	CACGAG	1 cut(s)	776
BbrPI	CACGTG	1 cut(s)	563
BbsI	GAAGAC	2 cut(s)	341, 418
Bbv12I	GWGCWC	2 cut(s)	162, 676
BbvI	GCAGC	3 cut(s)	327, 622, 783
BccI	CCATC	3 cut(s)	70, 76, 539
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	5 cut(s)	132, 155, 657, 702, 858
BcnI	CCSGG	2 cut(s)	821, 822
BcoDI	GTCTC	2 cut(s)	442, 644
BisI	GCNGC	4 cut(s)	259, 341, 611, 797
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	4 cut(s)	260, 342, 612, 798
Bme1390I	CCNGG	7 cut(s)	132, 155, 657, 702, 821, 822, 858
BmeT110I	CYCGRG	1 cut(s)	820
BmiI	GGNNCC	4 cut(s)	270, 661, 723, 732
BmrFI	CCNGG	7 cut(s)	132, 155, 657, 702, 821, 822, 858
BmsI	GCATC	3 cut(s)	607, 783, 879
BpiI	GAAGAC	2 cut(s)	341, 418
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpmI	CTGGAG	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	821, 822
BsaAI	YACGTR	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	153, 820
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 418, 701, 778
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	912
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	5 cut(s)	132, 155, 657, 702, 858
BseDI	CCNNGG	2 cut(s)	153, 820
BseGI	GGATG	2 cut(s)	382, 622
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	4 cut(s)	197, 418, 701, 778
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	188, 717
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	327, 622, 783
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	2 cut(s)	156, 326
BshFI	GGCC	4 cut(s)	51, 130, 386, 411
BshNI	GGYRCC	2 cut(s)	659, 721
BsiHKAI	GWGCWC	2 cut(s)	162, 676
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	2 cut(s)	272, 821
BslI	CCNNNNNNNGG	4 cut(s)	197, 418, 701, 778
BsmAI	GTCTC	2 cut(s)	442, 644
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	51, 130, 386, 411
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	820
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	97, 162, 676
Bsp143I	GATC	1 cut(s)	285
Bsp1720I	GCTNAGC	1 cut(s)	852
BspACI	CCGC	3 cut(s)	258, 680, 938
BspANI	GGCC	4 cut(s)	51, 130, 386, 411
BspCNI	CTCAG	2 cut(s)	187, 718
BspLI	GGNNCC	4 cut(s)	270, 661, 723, 732
BspQI	GCTCTTC	2 cut(s)	102, 812
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	659, 721
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	912
BssECI	CCNNGG	2 cut(s)	153, 820
BssMI	GATC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	435
BssSI	CACGAG	1 cut(s)	776
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	5 cut(s)	132, 155, 657, 702, 858
Bst6I	CTCTTC	3 cut(s)	102, 445, 812
BstACI	GRCGYC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	53, 345, 384
BstDEI	CTNAG	3 cut(s)	174, 726, 852
BstF5I	GGATG	2 cut(s)	382, 622
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	2 cut(s)	442, 644
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 143, 452, 626, 802
BstNI	CCWGG	5 cut(s)	132, 155, 657, 702, 858
BstSCI	CCNGG	7 cut(s)	130, 153, 655, 700, 819, 820, 856
BstV1I	GCAGC	3 cut(s)	327, 622, 783
BstV2I	GAAGAC	2 cut(s)	341, 418
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	4 cut(s)	51, 130, 386, 411
BtsCI	GGATG	2 cut(s)	382, 622
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	53, 345, 384
Cfr9I	CCCGGG	1 cut(s)	820
CseI	GACGC	2 cut(s)	346, 403
CviAII	CATG	5 cut(s)	47, 241, 349, 496, 581
DdeI	CTNAG	3 cut(s)	174, 726, 852
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	3 cut(s)	102, 445, 812
EarI	CTCTTC	3 cut(s)	102, 445, 812
Ecl136II	GAGCTC	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	97, 162
Eco31I	GGTCTC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	160
Eco72I	CACGTG	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	820
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	943
EcoRII	CCWGG	5 cut(s)	130, 153, 655, 700, 856
EcoT38I	GRGCYC	2 cut(s)	97, 162
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	5 cut(s)	50, 244, 352, 499, 584
FatI	CATG	5 cut(s)	46, 240, 348, 495, 580
Fnu4HI	GCNGC	4 cut(s)	259, 341, 611, 797
FokI	GGATG	2 cut(s)	389, 629
FriOI	GRGCYC	2 cut(s)	97, 162
Fsp4HI	GCNGC	4 cut(s)	259, 341, 611, 797
GluI	GCNGC	4 cut(s)	259, 341, 611, 797
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	4 cut(s)	51, 130, 386, 411
HapII	CCGG	2 cut(s)	272, 821
HgaI	GACGC	2 cut(s)	346, 403
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	5 cut(s)	50, 244, 352, 499, 584
HindIII	AAGCTT	2 cut(s)	414, 921
HinfI	GANTC	3 cut(s)	164, 172, 766
HpaII	CCGG	2 cut(s)	272, 821
HphI	GGTGA	1 cut(s)	943
Hpy188I	TCNGA	4 cut(s)	75, 200, 526, 765
Hpy188III	TCNNGA	3 cut(s)	374, 391, 776
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	4 cut(s)	18, 230, 397, 583
HpyCH4IV	ACGT	3 cut(s)	435, 551, 562
HpyCH4V	TGCA	6 cut(s)	137, 343, 469, 799, 892, 910
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 143, 452, 626, 802
HpyF3I	CTNAG	3 cut(s)	174, 726, 852
HpySE526I	ACGT	3 cut(s)	435, 551, 562
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	5 cut(s)	50, 244, 352, 499, 584
Kzo9I	GATC	1 cut(s)	285
LguI	GCTCTTC	2 cut(s)	102, 812
LmnI	GCTCC	4 cut(s)	157, 671, 736, 742
Lsp1109I	GCAGC	3 cut(s)	327, 622, 783
LweI	GCATC	3 cut(s)	607, 783, 879
MaeII	ACGT	3 cut(s)	435, 551, 562
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	1 cut(s)	287
MbiI	CCGCTC	1 cut(s)	682
MboI	GATC	1 cut(s)	285
MboII	GAAGA	8 cut(s)	89, 92, 231, 343, 346, 418, 432, 799
MhlI	GDGCHC	3 cut(s)	97, 162, 676
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	3 cut(s)	208, 326, 943
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	9 cut(s)	259, 424, 577, 687, 721, 772, 783, 826, 926
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	3 cut(s)	111, 828, 927
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	272, 821
MspR9I	CCNGG	7 cut(s)	132, 155, 657, 702, 821, 822, 858
MvaI	CCWGG	5 cut(s)	132, 155, 657, 702, 858
MwoI	GCNNNNNNNGC	5 cut(s)	57, 143, 452, 626, 802
NciI	CCSGG	2 cut(s)	821, 822
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	5 cut(s)	50, 244, 352, 499, 584
NlaIV	GGNNCC	4 cut(s)	270, 661, 723, 732
NmuCI	GTSAC	1 cut(s)	931
NspV	TTCGAA	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	130
PciSI	GCTCTTC	2 cut(s)	102, 812
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PfeI	GAWTC	2 cut(s)	164, 766
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	4 cut(s)	260, 342, 612, 798
PleI	GAGTC	1 cut(s)	166
PmaCI	CACGTG	1 cut(s)	563
PmlI	CACGTG	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	5 cut(s)	130, 153, 655, 700, 856
PspCI	CACGTG	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	5 cut(s)	130, 153, 655, 700, 856
PspN4I	GGNNCC	4 cut(s)	270, 661, 723, 732
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	102, 812
SaqAI	TTAA	3 cut(s)	111, 828, 927
SatI	GCNGC	4 cut(s)	259, 341, 611, 797
Sau3AI	GATC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	7 cut(s)	132, 155, 657, 702, 821, 822, 858
SduI	GDGCHC	3 cut(s)	97, 162, 676
SfaNI	GCATC	3 cut(s)	607, 783, 879
SfuI	TTCGAA	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	208, 326, 943
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	258, 680, 938
SspI	AATATT	1 cut(s)	751
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	7 cut(s)	130, 153, 655, 700, 819, 820, 856
TaiI	ACGT	3 cut(s)	438, 554, 565
TaqI	TCGA	4 cut(s)	11, 162, 321, 429
TasI	AATT	3 cut(s)	208, 326, 943
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	164, 766
Tru1I	TTAA	3 cut(s)	111, 828, 927
Tru9I	TTAA	3 cut(s)	111, 828, 927
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	3 cut(s)	340, 610, 796
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	2 cut(s)	35, 512
TspGWI	ACGGA	3 cut(s)	278, 616, 778
TspMI	CCCGGG	1 cut(s)	820
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	701
XapI	RAATTY	1 cut(s)	943
XmaI	CCCGGG	1 cut(s)	820
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.